Ss1.1-Lng1-LNG010072E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCTCACGCCTAGCGCAATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCT CCTGGGAAACCTGCTCAGCCCCGACAATGTGGTCCGGAAACAGGCAGAGGAAACCTACGA GAACATCCCAGGCCAGTCGAAGATCACATTCCTCTTACAGGCCATCCGAAATACAACAGC TGCTGAGGAGGCTAGACAAATGGCTGCTGTTCTCCTAAGACGTCTTTTGTCCTCTGCGTT TGATGAAGTCTATCCAACTCTTCCCACTGATGTTCAGACTGCCATCAAGAGTGAGCTACT AATGATTATTCAAATGGAAACACAGTCTAGCATGAGGAAAAAAATTTGTGATATTGCGGC AGAGTTGGCCAGGAATTTAATAGATGAGGATGGCAACAACCAATGGCCTGAAGGTTTGAA GTTCCTTTTTGATTCAGTCAGCTCTCAAAACATGGGACTGCGGGAAGCTGCCCTTCATAT TTTCTGGAACTTTCCTGGAATTTTTGGGAATCAACAGCAGCACTACTTAGACGTCATCAA ACGGATGTTAGTTCAATGTATGCAAGATCAGGAACATCCTTCGATCAGGACATTATCTGC TAGAGCTACTGCTGCATTTATACTTGCAAACGAGCATAATGTTGCTCTGTTCAAACATTT TTGCAGACTTGTTACCTGGATTCTTACAGGCTGTAAATGACTCATGCTACCAGAATGATG ATTCAGTCCTAAAATCCCTTGTTGAGATTGCAGACACTGTTCCAAAGTATTTGCGTCCTC ATTTGGAAGCTACTTTACAGCTAAGTCTGAAAGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCTCACGCCTAGCGCAATGGCGGCGGCCGCGGCGGAGCAGCAACAGTTCTACCTGCT CCTGGGAAACCTGCTCAGCCCCGACAATGTGGTCCGGAAACAGGCAGAGGAAACCTACGA GAACATCCCAGGCCAGTCGAAGATCACATTCCTCTTACAGGCCATCCGAAATACAACAGC TGCTGAGGAGGCTAGACAAATGGCTGCTGTTCTCCTAAGACGTCTTTTGTCCTCTGCGTT TGATGAAGTCTATCCAACTCTTCCCACTGATGTTCAGACTGCCATCAAGAGTGAGCTACT AATGATTATTCAAATGGAAACACAGTCTAGCATGAGGAAAAAAATTTGTGATATTGCGGC AGAGTTGGCCAGGAATTTAATAGATGAGGATGGCAACAACCAATGGCCTGAAGGTTTGAA GTTCCTTTTTGATTCAGTCAGCTCTCAAAACATGGGACTGCGGGAAGCTGCCCTTCATAT TTTCTGGAACTTTCCTGGAATTTTTGGGAATCAACAGCAGCACTACTTAGACGTCATCAA ACGGATGTTAGTTCAATGTATGCAAGATCAGGAACATCCTTCGATCAGGACATTATCTGC TAGAGCTACTGCTGCATTTATACTTGCAAACGAGCATAATGTTGCTCTGTTCAAACATTT TTGCAGACTTGTTACCTGGATTCTTACAGGCTGTAAATGACTCATGCTACCAGAATGATG ATTCAGTCCTAAAATCCCTTGTTGAGATTGCAGACACTGTTCCAAAGTATTTGCGTCCTC ATTTGGAAGCTACTTTACAGCTAAGTCTGAAAGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 228-347, - strand, RNAz p=0.971587 | |
| 697-814, - strand, RNAz p=0.747508 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 228-347, - strand, RNAz p=0.971587 | |
| 697-814, - strand, RNAz p=0.747508 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 189-392, gnl|bosTau2|chr12 (39396992-39396789) | |
| 189-392, gnl|canFam2|chr22 (51097570-51097772) | |
| 189-392, gnl|danRer3|chrUn (132545867-132546064) | |
| 189-392, gnl|dasNov1|scaffold_13058 (8642-8844) | |
| 189-392, gnl|echTel1|scaffold_283725 (30063-29861) | |
| 189-392, gnl|fr1|chrUn (251729257-251729456) | |
| 189-392, gnl|galGal2|chr1 (137788929-137788725) | |
| 189-392, gnl|hg17|chr13 (97435675-97435877) | |
| 189-392, gnl|Hg17|chr13 (97435674-97435877) | |
| 189-392, gnl|loxAfr1|scaffold_50638 (8247-8449) | |
| 189-392, gnl|mm7|chr14 (115324213-115324415) | |
| 189-392, gnl|Mm7|chr14 (115324212-115324415) | |
| 189-392, gnl|monDom2|scaffold_11 (54641042-54640840) | |
| 189-392, gnl|oryCun1|scaffold_206353 (2057-1855) | |
| 189-392, gnl|panTro1|chr14 (80651230-80651432) | |
| 189-392, gnl|rheMac2|chr17 (78365796-78365998) | |
| 189-392, gnl|rn3|chr15 (106010869-106011071) | |
| 189-392, gnl|tetNig1|chr3 (7626539-7626340) | |
| 189-392, gnl|xenTro1|scaffold_128 (1670038-1670240) | |
| 475-588, gnl|bosTau2|chr12 (39393832-39393719) | |
| 475-588, gnl|Hg17|chr13 (97440373-97440482) | |
| 475-588, gnl|Mm7|chr14 (115327320-115327432) | |
| 688-814, gnl|bosTau2|chr12 (39391147-39391021) | |
| 688-814, gnl|canFam2|chr22 (51104141-51104269) | |
| 688-814, gnl|danRer3|chrUn (132455057-132455185) | |
| 688-814, gnl|dasNov1|scaffold_13058 (16674-16802) | |
| 688-814, gnl|echTel1|scaffold_283725 (21837-21709) | |
| 688-814, gnl|fr1|chrUn (251730194-251730322) | |
| 688-814, gnl|galGal2|chr1 (137784137-137784009) | |
| 688-814, gnl|hg17|chr13 (97443146-97443274) | |
| 688-814, gnl|Hg17|chr13 (97443145-97443271) | |
| 688-814, gnl|loxAfr1|scaffold_147086 (4388-4260) | |
| 688-814, gnl|mm7|chr14 (115330491-115330619) | |
| 688-814, gnl|Mm7|chr14 (115330490-115330616) | |
| 688-814, gnl|monDom2|scaffold_11 (54632176-54632048) | |
| 688-814, gnl|oryCun1|scaffold_188140 (18767-18645) | |
| 688-814, gnl|panTro1|chr14 (80658702-80658830) | |
| 688-814, gnl|rheMac2|chr17 (78373285-78373413) | |
| 688-814, gnl|rn3|chr15 (106016966-106017094) | |
| 688-814, gnl|tetNig1|chr3 (7625580-7625452) | |
| 688-814, gnl|xenTro1|scaffold_128 (1673821-1673965) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 189-392, gnl|bosTau2|chr12 (39396992-39396789) | |
| 189-392, gnl|canFam2|chr22 (51097570-51097772) | |
| 189-392, gnl|danRer3|chrUn (132545867-132546064) | |
| 189-392, gnl|dasNov1|scaffold_13058 (8642-8844) | |
| 189-392, gnl|echTel1|scaffold_283725 (30063-29861) | |
| 189-392, gnl|fr1|chrUn (251729257-251729456) | |
| 189-392, gnl|galGal2|chr1 (137788929-137788725) | |
| 189-392, gnl|hg17|chr13 (97435675-97435877) | |
| 189-392, gnl|Hg17|chr13 (97435674-97435877) | |
| 189-392, gnl|loxAfr1|scaffold_50638 (8247-8449) | |
| 189-392, gnl|mm7|chr14 (115324213-115324415) | |
| 189-392, gnl|Mm7|chr14 (115324212-115324415) | |
| 189-392, gnl|monDom2|scaffold_11 (54641042-54640840) | |
| 189-392, gnl|oryCun1|scaffold_206353 (2057-1855) | |
| 189-392, gnl|panTro1|chr14 (80651230-80651432) | |
| 189-392, gnl|rheMac2|chr17 (78365796-78365998) | |
| 189-392, gnl|rn3|chr15 (106010869-106011071) | |
| 189-392, gnl|tetNig1|chr3 (7626539-7626340) | |
| 189-392, gnl|xenTro1|scaffold_128 (1670038-1670240) | |
| 475-588, gnl|bosTau2|chr12 (39393832-39393719) | |
| 475-588, gnl|Hg17|chr13 (97440373-97440482) | |
| 475-588, gnl|Mm7|chr14 (115327320-115327432) | |
| 688-814, gnl|bosTau2|chr12 (39391147-39391021) | |
| 688-814, gnl|canFam2|chr22 (51104141-51104269) | |
| 688-814, gnl|danRer3|chrUn (132455057-132455185) | |
| 688-814, gnl|dasNov1|scaffold_13058 (16674-16802) | |
| 688-814, gnl|echTel1|scaffold_283725 (21837-21709) | |
| 688-814, gnl|fr1|chrUn (251730194-251730322) | |
| 688-814, gnl|galGal2|chr1 (137784137-137784009) | |
| 688-814, gnl|hg17|chr13 (97443146-97443274) | |
| 688-814, gnl|Hg17|chr13 (97443145-97443271) | |
| 688-814, gnl|loxAfr1|scaffold_147086 (4388-4260) | |
| 688-814, gnl|mm7|chr14 (115330491-115330619) | |
| 688-814, gnl|Mm7|chr14 (115330490-115330616) | |
| 688-814, gnl|monDom2|scaffold_11 (54632176-54632048) | |
| 688-814, gnl|oryCun1|scaffold_188140 (18767-18645) | |
| 688-814, gnl|panTro1|chr14 (80658702-80658830) | |
| 688-814, gnl|rheMac2|chr17 (78373285-78373413) | |
| 688-814, gnl|rn3|chr15 (106016966-106017094) | |
| 688-814, gnl|tetNig1|chr3 (7625580-7625452) | |
| 688-814, gnl|xenTro1|scaffold_128 (1673821-1673965) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |