Ss1.1-Lng1-LNG010072F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTCTGCCCCCGGCCTCGCGCGGAGGGGCGGGGGCGGCGCCAGGAAGGCGACGGCACCG GCGACTCCCGGAGACCACTGTCCACAGCTCCTGTGAAGATGTCCACTCCAGACCCACCTC TGGGCGGAACACCTCGGCCAGGCCCTTCCCCGGGCCCGGGCCCCTCCCCTGGAGCCATGT TGGGCCCTAGCCCGGGGCCCTCTCCTGGCTCCGCCCACAGCATGATGGGGCCCAGCCCGG GGCCTCCCTCAGCAGGACACCCCATCCCGACCCAGGGGCCTGGAGGGTACCCTCAGGACA ACATGCACCAGATGCACAAGCCTATGGAGTCCATGCATGAGAAGGGCATGTCGGATGACC CCCGCTACAACCAGATGAAGGGGATGGGCATGCGGTCAGGGGGCCACGCAGGGATGGGGC CCCCGCCGAGCCCCATGGACCAACACTCCCAAGGTTACCCCTCGCCCCTGGGCGGCTCTG AGCATGCCTCCAGCCCGGTTCCAGCCAGCGGCCCATCCTCAGGCCCACAGATGTCGTCTG GTCCAGGAGGGGCCCCGCTGGATGGTGCCGACCCCCAGGCTTTGGGACAACAGAACCGGG GCCCTACCCCATTTAACCAGAACCAGCTGCACCAGCTCAGAGCCCAGATCATGGCCTACA AGATGCTGGCCCGGGGACAGCCCCTCCCTGACCACCTGCAAATGGCAGTCCAGGGAAAGC GGCCGATGCCTGGGATGCAGCAGCAGATGCCAACACTACCTCCACCCTCCGTGTCCGCAA CAGGACCTGGCCCTGGCCCCGGCCCTGGCCCCGGGCCGGGTCCGGGACCAGCACCTCCAA ATTATAGCAGGCCTCACGGTATGGGAGGGCCCAATATGCCTCCACCAGGACCCTCAGGCG TGCCCCCTGGGATGCCTGGCCAGCCCCCCGGAGGGCCTCCCAAGCCCTGGCCTGAAGGAC CCATGGCGAATGCTGCTGCCCCCACGAGCACACCTCAGAAGCTGATCCCCCCACAGCCAA CGGGTCGCCCCTCTCCTGCACCCCCTGCTGTCCCACCTGCTGCCTCCCCCGTGATGCCGC CCCAGACACAGTCGCCGGGGCAGCCAGCCCAGCCTGCCCCCATGGTGCCACTCCACCAGA AGCAGAGCCGGATCACCCCCATCCAGAAGCCGCGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTCTGCCCCCGGCCTCGCGCGGAGGGGCGGGGGCGGCGCCAGGAAGGCGACGGCACCG GCGACTCCCGGAGACCACTGTCCACAGCTCCTGTGAAGATGTCCACTCCAGACCCACCTC TGGGCGGAACACCTCGGCCAGGCCCTTCCCCGGGCCCGGGCCCCTCCCCTGGAGCCATGT TGGGCCCTAGCCCGGGGCCCTCTCCTGGCTCCGCCCACAGCATGATGGGGCCCAGCCCGG GGCCTCCCTCAGCAGGACACCCCATCCCGACCCAGGGGCCTGGAGGGTACCCTCAGGACA ACATGCACCAGATGCACAAGCCTATGGAGTCCATGCATGAGAAGGGCATGTCGGATGACC CCCGCTACAACCAGATGAAGGGGATGGGCATGCGGTCAGGGGGCCACGCAGGGATGGGGC CCCCGCCGAGCCCCATGGACCAACACTCCCAAGGTTACCCCTCGCCCCTGGGCGGCTCTG AGCATGCCTCCAGCCCGGTTCCAGCCAGCGGCCCATCCTCAGGCCCACAGATGTCGTCTG GTCCAGGAGGGGCCCCGCTGGATGGTGCCGACCCCCAGGCTTTGGGACAACAGAACCGGG GCCCTACCCCATTTAACCAGAACCAGCTGCACCAGCTCAGAGCCCAGATCATGGCCTACA AGATGCTGGCCCGGGGACAGCCCCTCCCTGACCACCTGCAAATGGCAGTCCAGGGAAAGC GGCCGATGCCTGGGATGCAGCAGCAGATGCCAACACTACCTCCACCCTCCGTGTCCGCAA CAGGACCTGGCCCTGGCCCCGGCCCTGGCCCCGGGCCGGGTCCGGGACCAGCACCTCCAA ATTATAGCAGGCCTCACGGTATGGGAGGGCCCAATATGCCTCCACCAGGACCCTCAGGCG TGCCCCCTGGGATGCCTGGCCAGCCCCCCGGAGGGCCTCCCAAGCCCTGGCCTGAAGGAC CCATGGCGAATGCTGCTGCCCCCACGAGCACACCTCAGAAGCTGATCCCCCCACAGCCAA CGGGTCGCCCCTCTCCTGCACCCCCTGCTGTCCCACCTGCTGCCTCCCCCGTGATGCCGC CCCAGACACAGTCGCCGGGGCAGCCAGCCCAGCCTGCCCCCATGGTGCCACTCCACCAGA AGCAGAGCCGGATCACCCCCATCCAGAAGCCGCGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 70-725, - strand, RNAz p=0.940488 | |
| 1057-1176, - strand, RNAz p=0.731387 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 70-725, - strand, RNAz p=0.940488 | |
| 1057-1176, - strand, RNAz p=0.731387 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 70-320, gnl|bosTau2|chr7 (10102944-10103194) | |
| 70-320, gnl|Hg17|chr19 (10955799-10956049) | |
| 70-320, gnl|Mm7|chr9 (21512045-21512295) | |
| 448-805, gnl|bosTau2|chr7 (10106079-10106437) | |
| 448-805, gnl|canFam2|chr20 (53250440-53250120) | |
| 448-805, gnl|danRer3|chr3 (9933658-9933260) | |
| 448-805, gnl|dasNov1|scaffold_4920 (31767-32074) | |
| 448-805, gnl|echTel1|scaffold_287419 (63906-63590) | |
| 448-805, gnl|fr1|chrUn (91987673-91988112) | |
| 448-805, gnl|galGal2|chrZ_random (633315-633603) | |
| 448-805, gnl|hg17|chr19 (10957845-10958165) | |
| 448-805, gnl|Hg17|chr19 (10957858-10958240) | |
| 448-805, gnl|loxAfr1|scaffold_24236 (3932-4252) | |
| 448-805, gnl|mm7|chr9 (21514757-21515077) | |
| 448-805, gnl|Mm7|chr9 (21514770-21515152) | |
| 448-805, gnl|monDom2|scaffold_106 (2956329-2956649) | |
| 448-805, gnl|oryCun1|scaffold_151586 (7076-7396) | |
| 448-805, gnl|panTro1|chr20 (11357620-11357940) | |
| 448-805, gnl|rheMac2|chr19 (10802787-10803107) | |
| 448-805, gnl|rn3|chr8 (20740098-20740418) | |
| 448-805, gnl|tetNig1|chr18 (3655954-3656291) | |
| 448-805, gnl|xenTro1|scaffold_1142 (103348-103043) | |
| 956-1176, gnl|bosTau2|chr7 (10107752-10107972) | |
| 956-1176, gnl|Hg17|chr19 (10959340-10959560) | |
| 956-1176, gnl|Mm7|chr9 (21516518-21516738) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 70-320, gnl|bosTau2|chr7 (10102944-10103194) | |
| 70-320, gnl|Hg17|chr19 (10955799-10956049) | |
| 70-320, gnl|Mm7|chr9 (21512045-21512295) | |
| 448-805, gnl|bosTau2|chr7 (10106079-10106437) | |
| 448-805, gnl|canFam2|chr20 (53250440-53250120) | |
| 448-805, gnl|danRer3|chr3 (9933658-9933260) | |
| 448-805, gnl|dasNov1|scaffold_4920 (31767-32074) | |
| 448-805, gnl|echTel1|scaffold_287419 (63906-63590) | |
| 448-805, gnl|fr1|chrUn (91987673-91988112) | |
| 448-805, gnl|galGal2|chrZ_random (633315-633603) | |
| 448-805, gnl|hg17|chr19 (10957845-10958165) | |
| 448-805, gnl|Hg17|chr19 (10957858-10958240) | |
| 448-805, gnl|loxAfr1|scaffold_24236 (3932-4252) | |
| 448-805, gnl|mm7|chr9 (21514757-21515077) | |
| 448-805, gnl|Mm7|chr9 (21514770-21515152) | |
| 448-805, gnl|monDom2|scaffold_106 (2956329-2956649) | |
| 448-805, gnl|oryCun1|scaffold_151586 (7076-7396) | |
| 448-805, gnl|panTro1|chr20 (11357620-11357940) | |
| 448-805, gnl|rheMac2|chr19 (10802787-10803107) | |
| 448-805, gnl|rn3|chr8 (20740098-20740418) | |
| 448-805, gnl|tetNig1|chr18 (3655954-3656291) | |
| 448-805, gnl|xenTro1|scaffold_1142 (103348-103043) | |
| 956-1176, gnl|bosTau2|chr7 (10107752-10107972) | |
| 956-1176, gnl|Hg17|chr19 (10959340-10959560) | |
| 956-1176, gnl|Mm7|chr9 (21516518-21516738) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) |