Non-Coding RNA Search

Ss1.1-Lng1-LNG010072F08.5

Sequence:


               
               ATTTTAAGTAAAATGAAAATCTTGCTCATCTGCATAAAGTGTCCTCCTACTTCATAAATT
CCACATGAGATACGATACACTAGCCCAGATGTTGACATTGGGAAATATCCGTGCTGGCAA
TAAAATGATTGTGATGGAAACATGTGCAGGCTTGGTGCTGGGTGCGATGATGGAACGCAT
GGGAGGTTTTGGCTCCATTATTCAGCTGTACCCTGGAGGCGGACCTGTTCGGGCAGCAAC
AGCGTGTTTTGGATTTCCAAAATCTTTTCTCAGTGGTCTTTATGAATTCCCCCTCAACAA
AGTGGACAGTCTCTTAAATGGAACGTTTTCTGCTGAGATGTTATCTTCAGAGCCAAAAGA
CAGCACCTCAGCTGAAGAAAGCAATGGCACGCTGGAGGAAAAACAGCCTTCAGAACAAGA
GAATGAGGACAGCGTGGCGGAGACCCAAGAGAGCAGTCACCCAGAAGAACAAGAGACGAT
GGAAATGATCTCTCAAGACCCAGAATATAAGGAGCCTAAAGAGAGAGGAAGCAAAAAGGA
TTATGTAAGAATGTTAAGAGTTCCCACTATCCTCATTATCCTTCCTCAGGGCTTCCATTA
ACTTCATGTAAGCACTGAGATTTGGTTTGGCTTTGGAGCATTAGCTCCCAAGATAGTAAA
TATCAAAACGGACAGTGTGTGTGTGAGTGTACACGCATGTGTGATTTAGTCTTTGAGATG
GAGCTTTAAGAGACAGATGTGCTGGATAGTTAGCTTGATGATGGTTCTATAACATAAGGG
CTCTTTTATGTGTCTTCAGCTTCCTCATAAATGACCTCCTTCTGTTGCTTCAGTCCAAGT
TGATAAATATTGTTAAAATGTTTTGACAGACCAGTGTTTCCATAAACCCCTGACTGAATG
ATCTCAGTATGTTGGTTTCTTATGTTTCCTCTTGAAGATTCAGGAAAAGCAGAGGAGACA
AGAAGAGCAGAAGAAAAGACATTTAGAAGCTGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTAAGTAAAATGAAAATCTTGCTCATCTGCATAAAGTGTCCTCCTACTTCATAAATT
CCACATGAGATACGATACACTAGCCCAGATGTTGACATTGGGAAATATCCGTGCTGGCAA
TAAAATGATTGTGATGGAAACATGTGCAGGCTTGGTGCTGGGTGCGATGATGGAACGCAT
GGGAGGTTTTGGCTCCATTATTCAGCTGTACCCTGGAGGCGGACCTGTTCGGGCAGCAAC
AGCGTGTTTTGGATTTCCAAAATCTTTTCTCAGTGGTCTTTATGAATTCCCCCTCAACAA
AGTGGACAGTCTCTTAAATGGAACGTTTTCTGCTGAGATGTTATCTTCAGAGCCAAAAGA
CAGCACCTCAGCTGAAGAAAGCAATGGCACGCTGGAGGAAAAACAGCCTTCAGAACAAGA
GAATGAGGACAGCGTGGCGGAGACCCAAGAGAGCAGTCACCCAGAAGAACAAGAGACGAT
GGAAATGATCTCTCAAGACCCAGAATATAAGGAGCCTAAAGAGAGAGGAAGCAAAAAGGA
TTATGTAAGAATGTTAAGAGTTCCCACTATCCTCATTATCCTTCCTCAGGGCTTCCATTA
ACTTCATGTAAGCACTGAGATTTGGTTTGGCTTTGGAGCATTAGCTCCCAAGATAGTAAA
TATCAAAACGGACAGTGTGTGTGTGAGTGTACACGCATGTGTGATTTAGTCTTTGAGATG
GAGCTTTAAGAGACAGATGTGCTGGATAGTTAGCTTGATGATGGTTCTATAACATAAGGG
CTCTTTTATGTGTCTTCAGCTTCCTCATAAATGACCTCCTTCTGTTGCTTCAGTCCAAGT
TGATAAATATTGTTAAAATGTTTTGACAGACCAGTGTTTCCATAAACCCCTGACTGAATG
ATCTCAGTATGTTGGTTTCTTATGTTTCCTCTTGAAGATTCAGGAAAAGCAGAGGAGACA
AGAAGAGCAGAAGAAAAGACATTTAGAAGCTGCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29145085|gb|AAH49083.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29145085|gb|AAH49083.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               263-382, - strand, RNAz p=0.663494
               

               
               463-581, - strand, RNAz p=0.998406

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-382, - strand, RNAz p=0.663494
               

               
               463-581, - strand, RNAz p=0.998406

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               184-996, gnl|bosTau2|chr13 (32970451-32971252)
               

               
               184-996, gnl|Hg17|chr20 (5871434-5870624)
               

               
               184-996, gnl|Mm7|chr2 (132549871-132549084)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-996, gnl|bosTau2|chr13 (32970451-32971252)
               

               
               184-996, gnl|Hg17|chr20 (5871434-5870624)
               

               
               184-996, gnl|Mm7|chr2 (132549871-132549084)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               spl (0.143184)

	263-382, - strand, RNAz p=0.663494
	463-581, - strand, RNAz p=0.998406

	184-996, gnl\|bosTau2\|chr13 (32970451-32971252)
	184-996, gnl\|Hg17\|chr20 (5871434-5870624)
	184-996, gnl\|Mm7\|chr2 (132549871-132549084)