Non-Coding RNA Search

Ss1.1-Lng1-LNG010072F09.5

Sequence:


               
               GTGTAGATTGTCTGAAACCCTTAACTGCGAAAAGGTAAGACAGTCTGGTGGGAAGAGACA
ATCTGTACTTTGCCAAATAATGACTGTGGAATACACAGCAAACTGTAAAGTTCAAAACAA
ATGTCCAAGTGGTTGTTGGGATGCGGGGGAAGGTGTCTGAGAAAGGCTCTCTGGACATGA
CCTTCATTCCTTCCTTTAAGAATGGCAGCTCAAAAAGGAAAGAGGGCAAGACTCAGATCT
CAACTCAAGCTGGGAATCCCTGACCTCCCTTTCCCAGTAGTGTCTTCCCTGGGATATGTA
GCTCAAGGTTACTGGTGAGTATAGGTTTAAAGAAATTAGTGGGAGAGGATCAGAATTGGA
TGGAGACAGGGTAGGCCAGTTAGGAAACTCAGGATTCTGCTAACTGAGAGGATTGAGGCT
CTCAGTTATGGGGGGAGAGGCACCCATGAGAAAGCAGAGAGAAGTGGTCTTTTTCTGCTA
GCGCAGTCAGATGTGCAGGCCTAAGGGTGGCAGTTGGGAAGGCTCTGGAAATCTCTAGGT
GACTGGGGAGGCCCAGAGCGTATTGAAGTACTTCTGAAGTATGAAGGCGCTTAGAGAGAA
TGCCTGTCACCATAGCCACCGGCACTGTACATCTTTGGGGAAACCATCTGCTCAGTATAT
AATCAGACTTTCCCTGTCATTTATTTCTCTCATACATTTTCCCTCCCAGCAAATTCCAGC
AGCCATCGAGATCTTCAAGGACTTTTGGCGAAAAGCATGCTGCTTCCCCAACCACACACA
GCCCAACCCACAGTGCTGAGTACCCCCTCGGCCAGGTTTTAGTACGTCCTTTTGTAGAAG
TTTCATTTCAGCGGACAATTTGCCATACAACTACAGCCGAAGGCCCAAACCCCAGCTGGA
ATGAAGAACTTGAACTTCCATTTAGGGCCCCCAACGGGGATTATAGCACCACGAGTTTGC
AGTCAGTGAAAGATGACGTGTTCATCAACATCTTTGATGAAGTGCTCTATGATGTCTTGG
AGCTTAAATCCTGCTGCTTTCCTGCTGCCAAGTTGATCCCATGACTGACTGTCTGGAGTT
GTTAAACCGTTATCACTTCCCACCCTCCTTCAGGATGACCGTGAAAGAGGAAGTGGAATC
CACACCCGTATTGAGAGACACTGGTTGGGATGTGTGAAAATTCCATTCAGCACCATCTAT
TTCCAAGCCAGGATTGATGGGACATTTAAAATCGACATTCCTCCAGTTCTTCTGGGCTAT
AGCAAGGAGCGGAGTGTGACGGCAGATCGGGGCTTTGATCCCGTCCGAAGCCTGAGTGAA
GGCTCCTACCTCACCCTGTTTATTACCTTGGAGCCGCAGCTGGTTCCCGGGGAGTCGGTT
CGAGAAAAGTTTGATTCTCAGGAAGATGAGAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTAGATTGTCTGAAACCCTTAACTGCGAAAAGGTAAGACAGTCTGGTGGGAAGAGACA
ATCTGTACTTTGCCAAATAATGACTGTGGAATACACAGCAAACTGTAAAGTTCAAAACAA
ATGTCCAAGTGGTTGTTGGGATGCGGGGGAAGGTGTCTGAGAAAGGCTCTCTGGACATGA
CCTTCATTCCTTCCTTTAAGAATGGCAGCTCAAAAAGGAAAGAGGGCAAGACTCAGATCT
CAACTCAAGCTGGGAATCCCTGACCTCCCTTTCCCAGTAGTGTCTTCCCTGGGATATGTA
GCTCAAGGTTACTGGTGAGTATAGGTTTAAAGAAATTAGTGGGAGAGGATCAGAATTGGA
TGGAGACAGGGTAGGCCAGTTAGGAAACTCAGGATTCTGCTAACTGAGAGGATTGAGGCT
CTCAGTTATGGGGGGAGAGGCACCCATGAGAAAGCAGAGAGAAGTGGTCTTTTTCTGCTA
GCGCAGTCAGATGTGCAGGCCTAAGGGTGGCAGTTGGGAAGGCTCTGGAAATCTCTAGGT
GACTGGGGAGGCCCAGAGCGTATTGAAGTACTTCTGAAGTATGAAGGCGCTTAGAGAGAA
TGCCTGTCACCATAGCCACCGGCACTGTACATCTTTGGGGAAACCATCTGCTCAGTATAT
AATCAGACTTTCCCTGTCATTTATTTCTCTCATACATTTTCCCTCCCAGCAAATTCCAGC
AGCCATCGAGATCTTCAAGGACTTTTGGCGAAAAGCATGCTGCTTCCCCAACCACACACA
GCCCAACCCACAGTGCTGAGTACCCCCTCGGCCAGGTTTTAGTACGTCCTTTTGTAGAAG
TTTCATTTCAGCGGACAATTTGCCATACAACTACAGCCGAAGGCCCAAACCCCAGCTGGA
ATGAAGAACTTGAACTTCCATTTAGGGCCCCCAACGGGGATTATAGCACCACGAGTTTGC
AGTCAGTGAAAGATGACGTGTTCATCAACATCTTTGATGAAGTGCTCTATGATGTCTTGG
AGCTTAAATCCTGCTGCTTTCCTGCTGCCAAGTTGATCCCATGACTGACTGTCTGGAGTT
GTTAAACCGTTATCACTTCCCACCCTCCTTCAGGATGACCGTGAAAGAGGAAGTGGAATC
CACACCCGTATTGAGAGACACTGGTTGGGATGTGTGAAAATTCCATTCAGCACCATCTAT
TTCCAAGCCAGGATTGATGGGACATTTAAAATCGACATTCCTCCAGTTCTTCTGGGCTAT
AGCAAGGAGCGGAGTGTGACGGCAGATCGGGGCTTTGATCCCGTCCGAAGCCTGAGTGAA
GGCTCCTACCTCACCCTGTTTATTACCTTGGAGCCGCAGCTGGTTCCCGGGGAGTCGGTT
CGAGAAAAGTTTGATTCTCAGGAAGATGAGAAATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61817899|ref|XP_595408.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61817899|ref|XP_595408.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               502-617, - strand, RNAz p=0.593709

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               502-617, - strand, RNAz p=0.593709

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               283-817, gnl|bosTau2|chr6 (62774637-62774100)
               

               
               283-817, gnl|Hg17|chr4 (15244191-15245376)
               


               
               1016-1212, gnl|bosTau2|chr6 (62771261-62771065)
               

               
               1016-1212, gnl|Hg17|chr4 (15248195-15248388)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               283-817, gnl|bosTau2|chr6 (62774637-62774100)
               

               
               283-817, gnl|Hg17|chr4 (15244191-15245376)
               


               
               1016-1212, gnl|bosTau2|chr6 (62771261-62771065)
               

               
               1016-1212, gnl|Hg17|chr4 (15248195-15248388)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	283-817, gnl\|bosTau2\|chr6 (62774637-62774100)
	283-817, gnl\|Hg17\|chr4 (15244191-15245376)

	1016-1212, gnl\|bosTau2\|chr6 (62771261-62771065)
	1016-1212, gnl\|Hg17\|chr4 (15248195-15248388)