Ss1.1-Lng1-LNG010074A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCAGCTGATAGAGCGGGAAGAGGAAGTGTGCATTTTTTATGAAAAAATAAATATCCAAG AGAAGATGAAGCTAAATGGAGAACTTGAAATACATGTCCTAGAGGAAAAGATCCGATTCC TGAAACTGAAGATTGCCGAGAAGCAAAGGCAGATTCACGTGACCCAGCAATTACTGCCAG TCAAGAGGTCTCTGGATGCTGATTTAGCAGTGCTGCAGATTCAGTTTTCACAGTGTACAG ACAGAATAAAAGACCTGGAGAAACAATTTATCAATCCCGACAGTGAGAACAGAACACGCT TCCTTCCAGGGAAAGATATGACCGAAGAAGAAATGATTAAAAAAATGGATGCGCTGGAAC TACAGCTGGCCAAGAAGGAGGAGAAGTTGCTGGAGAAGGATTTCATCTATGAACAGGTGT CTCGGCTCACAGACAGGCTCTACAGCAAAACTCAGGCCTGCAAGCAGGACACACTGCTCT TGGCCAAGAAGATGAACGGCTACCAGAAAAAAATCAAAGATGCTACCGAAAAAATGATGG CTCTTGTTGCTGAGCTGTCCATGAAACAAGCTATGGCCATTGAACTCCAAAAGGAAGTCA AAGAGAAGGAAGACTTCATCTTCACTTGCAATTCCAGGATGGAAAAGGGTCTGCCCCTCA ACAAAGAGATTGAGAGAGAATGGCTGAAAGTACTTCGAGATGAAGAAATGTACGCTTCGG CCATCGCTGAAAAGTCTCGGGAGTTCCTGGAAGCAGAAAATCGCCAGCTGCCCAATGGTG TTTACACAACCGCAGAGCCGCGTCCAAATGCCTACATCCCAGAGGCAGAGGCCACTCTTC CTCTGCCAAAACCATATGGTGCTCTGGCTCCTTTTAAGCCCAGTGAACCTGGGGCCAATA TGAGGCACATAAGGAAACCTGTTATAAAGCCAATTGAAATTTGAATGTGTGAACCAGCCC AGGCTTCTCAAGGAGACACTTCAGCTGGGTTTCTTCCTATCCTCGGCTGCAAAGTGTCCA CATTAAGAGCTCTGAATTACAGATAAACATGGTATCCACAATCACCCCACACAATTACCC AACAGAGAACAATATGCTTGCTTCCTTTCACACTCACCAATTTCTGTCTTTTTCACTCTA TTGACTACCTTTCAGAAATCTAGAGTAGAGTGGATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCAGCTGATAGAGCGGGAAGAGGAAGTGTGCATTTTTTATGAAAAAATAAATATCCAAG AGAAGATGAAGCTAAATGGAGAACTTGAAATACATGTCCTAGAGGAAAAGATCCGATTCC TGAAACTGAAGATTGCCGAGAAGCAAAGGCAGATTCACGTGACCCAGCAATTACTGCCAG TCAAGAGGTCTCTGGATGCTGATTTAGCAGTGCTGCAGATTCAGTTTTCACAGTGTACAG ACAGAATAAAAGACCTGGAGAAACAATTTATCAATCCCGACAGTGAGAACAGAACACGCT TCCTTCCAGGGAAAGATATGACCGAAGAAGAAATGATTAAAAAAATGGATGCGCTGGAAC TACAGCTGGCCAAGAAGGAGGAGAAGTTGCTGGAGAAGGATTTCATCTATGAACAGGTGT CTCGGCTCACAGACAGGCTCTACAGCAAAACTCAGGCCTGCAAGCAGGACACACTGCTCT TGGCCAAGAAGATGAACGGCTACCAGAAAAAAATCAAAGATGCTACCGAAAAAATGATGG CTCTTGTTGCTGAGCTGTCCATGAAACAAGCTATGGCCATTGAACTCCAAAAGGAAGTCA AAGAGAAGGAAGACTTCATCTTCACTTGCAATTCCAGGATGGAAAAGGGTCTGCCCCTCA ACAAAGAGATTGAGAGAGAATGGCTGAAAGTACTTCGAGATGAAGAAATGTACGCTTCGG CCATCGCTGAAAAGTCTCGGGAGTTCCTGGAAGCAGAAAATCGCCAGCTGCCCAATGGTG TTTACACAACCGCAGAGCCGCGTCCAAATGCCTACATCCCAGAGGCAGAGGCCACTCTTC CTCTGCCAAAACCATATGGTGCTCTGGCTCCTTTTAAGCCCAGTGAACCTGGGGCCAATA TGAGGCACATAAGGAAACCTGTTATAAAGCCAATTGAAATTTGAATGTGTGAACCAGCCC AGGCTTCTCAAGGAGACACTTCAGCTGGGTTTCTTCCTATCCTCGGCTGCAAAGTGTCCA CATTAAGAGCTCTGAATTACAGATAAACATGGTATCCACAATCACCCCACACAATTACCC AACAGAGAACAATATGCTTGCTTCCTTTCACACTCACCAATTTCTGTCTTTTTCACTCTA TTGACTACCTTTCAGAAATCTAGAGTAGAGTGGATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 353-491, - strand, RNAz p=0.952634 | |
| 353-450, - strand, RNAz p=0.717497 | |
| 779-938, - strand, RNAz p=0.719499 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 353-491, - strand, RNAz p=0.952634 | |
| 353-450, - strand, RNAz p=0.717497 | |
| 779-938, - strand, RNAz p=0.719499 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-247, gnl|bosTau2|chr4 (20008942-20008694) | |
| 1-247, gnl|canFam2|chr18 (20383326-20383660) | |
| 1-247, gnl|danRer3|chr4 (30756622-30756300) | |
| 1-247, gnl|dasNov1|scaffold_10069 (20556-20224) | |
| 1-247, gnl|echTel1|scaffold_323292 (80484-80795) | |
| 1-247, gnl|fr1|chrUn (187025627-187025968) | |
| 1-247, gnl|galGal2|chr1 (10966530-10966835) | |
| 1-247, gnl|hg17|chr7 (76556501-76556829) | |
| 1-247, gnl|Hg17|chr7 (76556530-76556777) | |
| 1-247, gnl|loxAfr1|scaffold_32109 (15076-14759) | |
| 1-247, gnl|mm7|chr5 (20339650-20339315) | |
| 1-247, gnl|Mm7|chr5 (20339619-20339372) | |
| 1-247, gnl|monDom2|scaffold_30 (28477116-28476786) | |
| 1-247, gnl|oryCun1|scaffold_212687 (37801-38135) | |
| 1-247, gnl|panTro1|chr6 (77714821-77715149) | |
| 1-247, gnl|rheMac2|chr3 (140072335-140072007) | |
| 1-247, gnl|rn3|chr4 (9287243-9287578) | |
| 1-247, gnl|xenTro1|scaffold_61 (1617213-1616889) | |
| 353-491, gnl|bosTau2|chr4 (20004800-20004662) | |
| 353-491, gnl|canFam2|chr18 (20389061-20389216) | |
| 353-491, gnl|danRer3|chr4 (30753752-30753606) | |
| 353-491, gnl|dasNov1|scaffold_10069 (15137-14981) | |
| 353-491, gnl|echTel1|scaffold_323292 (83590-83745) | |
| 353-491, gnl|fr1|chrUn (187029996-187030152) | |
| 353-491, gnl|galGal2|chr1 (10974384-10974537) | |
| 353-491, gnl|hg17|chr7 (76561396-76561552) | |
| 353-491, gnl|Hg17|chr7 (76561407-76561545) | |
| 353-491, gnl|loxAfr1|scaffold_32109 (12423-12267) | |
| 353-491, gnl|mm7|chr5 (20335253-20335097) | |
| 353-491, gnl|Mm7|chr5 (20335240-20335102) | |
| 353-491, gnl|monDom2|scaffold_30 (28456895-28456740) | |
| 353-491, gnl|oryCun1|scaffold_212687 (44538-44694) | |
| 353-491, gnl|panTro1|chr6 (77719723-77719879) | |
| 353-491, gnl|rheMac2|chr3 (140066839-140066683) | |
| 353-491, gnl|rn3|chr4 (9292262-9292418) | |
| 353-491, gnl|tetNig1|chr19 (3884026-3883881) | |
| 353-491, gnl|xenTro1|scaffold_61 (1611552-1611389) | |
| 740-1168, gnl|bosTau2|chr4 (19999131-19998714) | |
| 740-1168, gnl|Hg17|chr7 (76568630-76569125) | |
| 740-1168, gnl|Mm7|chr5 (20331664-20331175) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-247, gnl|bosTau2|chr4 (20008942-20008694) | |
| 1-247, gnl|canFam2|chr18 (20383326-20383660) | |
| 1-247, gnl|danRer3|chr4 (30756622-30756300) | |
| 1-247, gnl|dasNov1|scaffold_10069 (20556-20224) | |
| 1-247, gnl|echTel1|scaffold_323292 (80484-80795) | |
| 1-247, gnl|fr1|chrUn (187025627-187025968) | |
| 1-247, gnl|galGal2|chr1 (10966530-10966835) | |
| 1-247, gnl|hg17|chr7 (76556501-76556829) | |
| 1-247, gnl|Hg17|chr7 (76556530-76556777) | |
| 1-247, gnl|loxAfr1|scaffold_32109 (15076-14759) | |
| 1-247, gnl|mm7|chr5 (20339650-20339315) | |
| 1-247, gnl|Mm7|chr5 (20339619-20339372) | |
| 1-247, gnl|monDom2|scaffold_30 (28477116-28476786) | |
| 1-247, gnl|oryCun1|scaffold_212687 (37801-38135) | |
| 1-247, gnl|panTro1|chr6 (77714821-77715149) | |
| 1-247, gnl|rheMac2|chr3 (140072335-140072007) | |
| 1-247, gnl|rn3|chr4 (9287243-9287578) | |
| 1-247, gnl|xenTro1|scaffold_61 (1617213-1616889) | |
| 353-491, gnl|bosTau2|chr4 (20004800-20004662) | |
| 353-491, gnl|canFam2|chr18 (20389061-20389216) | |
| 353-491, gnl|danRer3|chr4 (30753752-30753606) | |
| 353-491, gnl|dasNov1|scaffold_10069 (15137-14981) | |
| 353-491, gnl|echTel1|scaffold_323292 (83590-83745) | |
| 353-491, gnl|fr1|chrUn (187029996-187030152) | |
| 353-491, gnl|galGal2|chr1 (10974384-10974537) | |
| 353-491, gnl|hg17|chr7 (76561396-76561552) | |
| 353-491, gnl|Hg17|chr7 (76561407-76561545) | |
| 353-491, gnl|loxAfr1|scaffold_32109 (12423-12267) | |
| 353-491, gnl|mm7|chr5 (20335253-20335097) | |
| 353-491, gnl|Mm7|chr5 (20335240-20335102) | |
| 353-491, gnl|monDom2|scaffold_30 (28456895-28456740) | |
| 353-491, gnl|oryCun1|scaffold_212687 (44538-44694) | |
| 353-491, gnl|panTro1|chr6 (77719723-77719879) | |
| 353-491, gnl|rheMac2|chr3 (140066839-140066683) | |
| 353-491, gnl|rn3|chr4 (9292262-9292418) | |
| 353-491, gnl|tetNig1|chr19 (3884026-3883881) | |
| 353-491, gnl|xenTro1|scaffold_61 (1611552-1611389) | |
| 740-1168, gnl|bosTau2|chr4 (19999131-19998714) | |
| 740-1168, gnl|Hg17|chr7 (76568630-76569125) | |
| 740-1168, gnl|Mm7|chr5 (20331664-20331175) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| nmm (0.132802) | |
| eep (0.122564) |