Non-Coding RNA Search

Ss1.1-Lng1-LNG010075C11.5

Sequence:


               
               CAGATAGTCCCATCCCAGTTGCACATCAGAGGACCCATGCTATGGAGAAACCCTTCAAGT
GTGATGAGTGTGGGAAGGCCTTCAGATGGGTCTCCCGCCTGAGTCAGCATCAGCTGACTC
ACACTGGAGAGAAACCATACAAATGCAACAAGTGTTCAAAGGCCTTTGGCTGTAGCTCAC
GGCTTATTCGCCACCAAAGAACTCACACTGGAGAAAAACCGTTTAAGTGTGATGAGTGTG
GGAAAGGCTTTGTGCAGGGCTCACACCTAATTCAGCACCAGAGGATTCATACTGGAGAGA
AACCCTATGAGTGCAGCGACTGTGGAAAGGCCTTTAGTCAGAGCTCAAGCCTCATTTACC
ATCAGAGGATCCATAAGGGGGAGAAGCCCTATGAGTGCCTCGAATGTGGAAAAGCCTTCA
GTATGAGCACACAGCTCACAATACATCAGAGGGTGCACACAGGGGAGAGGCCCTATAAGT
GTAGTGAATGTGGGAAGGCCTTCAGTCAAAACTCCACCCTCTTCCAACACCAGATAATTC
ATGCTGGGGTGAAACCCTATGGGTGCAGCGAGTGTGGAAAAGCCTTTAGCCGGAGCTCGT
ACCTGATTGAGCATCAGAGGATACACACTCGAGCCCAGTGGAACCATGAGTATGGGAATG
CCCTGGAAGGTTCCACCCATGTGAGCCGGAGGAAAGTCAGTACTGTAAAGAAACTGCATA
AGTGTAACGAGTGTGAAAAGATATTCAGATGGCGCTCGCATCTAATTATACACCAGAGAA
CTCACACTGGAGAGAAACCTTACAAATGTAACGAATGTGGCAAAGCTTTTAATCGGAGCT
CAAGGCTTACTCAGCATCAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATAGTCCCATCCCAGTTGCACATCAGAGGACCCATGCTATGGAGAAACCCTTCAAGT
GTGATGAGTGTGGGAAGGCCTTCAGATGGGTCTCCCGCCTGAGTCAGCATCAGCTGACTC
ACACTGGAGAGAAACCATACAAATGCAACAAGTGTTCAAAGGCCTTTGGCTGTAGCTCAC
GGCTTATTCGCCACCAAAGAACTCACACTGGAGAAAAACCGTTTAAGTGTGATGAGTGTG
GGAAAGGCTTTGTGCAGGGCTCACACCTAATTCAGCACCAGAGGATTCATACTGGAGAGA
AACCCTATGAGTGCAGCGACTGTGGAAAGGCCTTTAGTCAGAGCTCAAGCCTCATTTACC
ATCAGAGGATCCATAAGGGGGAGAAGCCCTATGAGTGCCTCGAATGTGGAAAAGCCTTCA
GTATGAGCACACAGCTCACAATACATCAGAGGGTGCACACAGGGGAGAGGCCCTATAAGT
GTAGTGAATGTGGGAAGGCCTTCAGTCAAAACTCCACCCTCTTCCAACACCAGATAATTC
ATGCTGGGGTGAAACCCTATGGGTGCAGCGAGTGTGGAAAAGCCTTTAGCCGGAGCTCGT
ACCTGATTGAGCATCAGAGGATACACACTCGAGCCCAGTGGAACCATGAGTATGGGAATG
CCCTGGAAGGTTCCACCCATGTGAGCCGGAGGAAAGTCAGTACTGTAAAGAAACTGCATA
AGTGTAACGAGTGTGAAAAGATATTCAGATGGCGCTCGCATCTAATTATACACCAGAGAA
CTCACACTGGAGAGAAACCTTACAAATGTAACGAATGTGGCAAAGCTTTTAATCGGAGCT
CAAGGCTTACTCAGCATCAGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q92970_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q92970_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               69-188, + strand, RNAz p=0.968648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-188, + strand, RNAz p=0.968648

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               69-599, gnl|bosTau2|chr1 (2000230-1999700)
               

               
               69-599, gnl|Hg17|chr16 (30444166-30443636)
               

               
               69-599, gnl|Mm7|chr7 (123440642-123440112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-599, gnl|bosTau2|chr1 (2000230-1999700)
               

               
               69-599, gnl|Hg17|chr16 (30444166-30443636)
               

               
               69-599, gnl|Mm7|chr7 (123440642-123440112)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ute (0.132784)
               

               
               spc (0.113366)

	69-599, gnl\|bosTau2\|chr1 (2000230-1999700)
	69-599, gnl\|Hg17\|chr16 (30444166-30443636)
	69-599, gnl\|Mm7\|chr7 (123440642-123440112)