Non-Coding RNA Search

Ss1.1-Lng1-LNG010075E07.5

Sequence:


               
               CTGGACTGAGCATGCCCAGTGATACATCCCTCTCTCCAGCGAGTCAAAACTCTCCATACT
GTATGACACCTGTGTCACAAGGCTCTCCGGCTAGTTCTGGGATAGGCAGTCCAATGGCGT
CTTCAACAATAACCAAAATCCACAGCAAAAGGTTTAGAGAGTATTGTAATCAAGTTCTTT
GTAAAGAGATTGATGAGTGTGTGACTCTTCTTCTTCAAGAGCTTGTCAGTTTCCAGGAAC
GCATCTACCAAAAGGATCCTGTAAGAGCAAAAGCGAGGAGACGGCTGGTTATGGGTCTAA
GGGAGGTTACCAAACATATGAAGTTAAACAAGATCAAATGTGTTATAATTTCTCCAAATT
GTGAAAAAATCCAGTCCAAAGGTGGCCTGGATGAGGCTCTCTATAATGTTATAGCCATGG
CACGGGAACAAGAAATTCCTTTTGTGTTTGCCCTTGGAAGAAAAGCTCTAGGACGTTGTG
TGAACAAGCTGGTTCCTGTGAGTGTAGTGGGAATCTTCAACTACTTTGGTGCTGAGAGCT
TGTTTAATAAATTAGTAGAACTCACTGAGGAAGCCAGGAAAGCATATAAAGATATGGTTG
CTGCAATGGAACAGTAGCAAGCTGAGGAAGCCTTAAAGAATGTGAAAAAGGTGCCACACC
ACATGGGTCATTCTCGGAATCCCTCTGCAGCAAGCGCCATTTCCTTCTGCAGTGTTATTT
CTGAACCCATCTCTGAAGTAAATGAAAAGGAATATGAAACAAATTGGAGAAATATGGTGG
AAACTTCAGATGGATTAGAAACGTCAGAAAATGAGAGAGAGGTTTCTTGTAAGCACAGCA
CATCTGAAAAACCCAGTAAACTTCCATTTGACACAGCCCCTGTTGGTAAGCAGCCATCCT
TAGTGGCTTCAGGCAATTCTACCTCAGCTACAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACTGAGCATGCCCAGTGATACATCCCTCTCTCCAGCGAGTCAAAACTCTCCATACT
GTATGACACCTGTGTCACAAGGCTCTCCGGCTAGTTCTGGGATAGGCAGTCCAATGGCGT
CTTCAACAATAACCAAAATCCACAGCAAAAGGTTTAGAGAGTATTGTAATCAAGTTCTTT
GTAAAGAGATTGATGAGTGTGTGACTCTTCTTCTTCAAGAGCTTGTCAGTTTCCAGGAAC
GCATCTACCAAAAGGATCCTGTAAGAGCAAAAGCGAGGAGACGGCTGGTTATGGGTCTAA
GGGAGGTTACCAAACATATGAAGTTAAACAAGATCAAATGTGTTATAATTTCTCCAAATT
GTGAAAAAATCCAGTCCAAAGGTGGCCTGGATGAGGCTCTCTATAATGTTATAGCCATGG
CACGGGAACAAGAAATTCCTTTTGTGTTTGCCCTTGGAAGAAAAGCTCTAGGACGTTGTG
TGAACAAGCTGGTTCCTGTGAGTGTAGTGGGAATCTTCAACTACTTTGGTGCTGAGAGCT
TGTTTAATAAATTAGTAGAACTCACTGAGGAAGCCAGGAAAGCATATAAAGATATGGTTG
CTGCAATGGAACAGTAGCAAGCTGAGGAAGCCTTAAAGAATGTGAAAAAGGTGCCACACC
ACATGGGTCATTCTCGGAATCCCTCTGCAGCAAGCGCCATTTCCTTCTGCAGTGTTATTT
CTGAACCCATCTCTGAAGTAAATGAAAAGGAATATGAAACAAATTGGAGAAATATGGTGG
AAACTTCAGATGGATTAGAAACGTCAGAAAATGAGAGAGAGGTTTCTTGTAAGCACAGCA
CATCTGAAAAACCCAGTAAACTTCCATTTGACACAGCCCCTGTTGGTAAGCAGCCATCCT
TAGTGGCTTCAGGCAATTCTACCTCAGCTACAAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837969|ref|XP_610817.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837969|ref|XP_610817.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               266-383, + strand, RNAz p=0.607943

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               266-383, + strand, RNAz p=0.607943

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               153-383, gnl|bosTau2|chr10 (42333489-42333260)
               

               
               153-383, gnl|canFam2|chr30 (18221589-18221886)
               

               
               153-383, gnl|danRer3|chr25 (2184597-2184307)
               

               
               153-383, gnl|echTel1|scaffold_88828 (1202-913)
               

               
               153-383, gnl|fr1|chrUn (65071090-65070802)
               

               
               153-383, gnl|galGal2|chr10 (10991195-10990885)
               

               
               153-383, gnl|hg17|chr15 (47080363-47080660)
               

               
               153-383, gnl|Hg17|chr15 (47080593-47080364)
               

               
               153-383, gnl|loxAfr1|scaffold_69062 (24538-24824)
               

               
               153-383, gnl|mm7|chr2 (125488235-125488533)
               

               
               153-383, gnl|Mm7|chr2 (125488465-125488236)
               

               
               153-383, gnl|monDom2|scaffold_12 (19684397-19684076)
               

               
               153-383, gnl|oryCun1|scaffold_181074 (55364-55661)
               

               
               153-383, gnl|panTro1|chr16 (47059670-47059968)
               

               
               153-383, gnl|rheMac2|chr7 (27324998-27325293)
               

               
               153-383, gnl|rn3|chr3 (112962291-112962589)
               

               
               153-383, gnl|tetNig1|chr5 (10120382-10120673)
               

               
               153-383, gnl|xenTro1|scaffold_27 (3009725-3010017)
               


               
               535-756, gnl|bosTau2|chr10 (42328115-42327894)
               

               
               535-756, gnl|Hg17|chr15 (47076077-47075856)
               

               
               535-756, gnl|Mm7|chr2 (125484888-125484667)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-383, gnl|bosTau2|chr10 (42333489-42333260)
               

               
               153-383, gnl|canFam2|chr30 (18221589-18221886)
               

               
               153-383, gnl|danRer3|chr25 (2184597-2184307)
               

               
               153-383, gnl|echTel1|scaffold_88828 (1202-913)
               

               
               153-383, gnl|fr1|chrUn (65071090-65070802)
               

               
               153-383, gnl|galGal2|chr10 (10991195-10990885)
               

               
               153-383, gnl|hg17|chr15 (47080363-47080660)
               

               
               153-383, gnl|Hg17|chr15 (47080593-47080364)
               

               
               153-383, gnl|loxAfr1|scaffold_69062 (24538-24824)
               

               
               153-383, gnl|mm7|chr2 (125488235-125488533)
               

               
               153-383, gnl|Mm7|chr2 (125488465-125488236)
               

               
               153-383, gnl|monDom2|scaffold_12 (19684397-19684076)
               

               
               153-383, gnl|oryCun1|scaffold_181074 (55364-55661)
               

               
               153-383, gnl|panTro1|chr16 (47059670-47059968)
               

               
               153-383, gnl|rheMac2|chr7 (27324998-27325293)
               

               
               153-383, gnl|rn3|chr3 (112962291-112962589)
               

               
               153-383, gnl|tetNig1|chr5 (10120382-10120673)
               

               
               153-383, gnl|xenTro1|scaffold_27 (3009725-3010017)
               


               
               535-756, gnl|bosTau2|chr10 (42328115-42327894)
               

               
               535-756, gnl|Hg17|chr15 (47076077-47075856)
               

               
               535-756, gnl|Mm7|chr2 (125484888-125484667)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	153-383, gnl\|bosTau2\|chr10 (42333489-42333260)
	153-383, gnl\|canFam2\|chr30 (18221589-18221886)
	153-383, gnl\|danRer3\|chr25 (2184597-2184307)
	153-383, gnl\|echTel1\|scaffold_88828 (1202-913)
	153-383, gnl\|fr1\|chrUn (65071090-65070802)
	153-383, gnl\|galGal2\|chr10 (10991195-10990885)
	153-383, gnl\|hg17\|chr15 (47080363-47080660)
	153-383, gnl\|Hg17\|chr15 (47080593-47080364)
	153-383, gnl\|loxAfr1\|scaffold_69062 (24538-24824)
	153-383, gnl\|mm7\|chr2 (125488235-125488533)
	153-383, gnl\|Mm7\|chr2 (125488465-125488236)
	153-383, gnl\|monDom2\|scaffold_12 (19684397-19684076)
	153-383, gnl\|oryCun1\|scaffold_181074 (55364-55661)
	153-383, gnl\|panTro1\|chr16 (47059670-47059968)
	153-383, gnl\|rheMac2\|chr7 (27324998-27325293)
	153-383, gnl\|rn3\|chr3 (112962291-112962589)
	153-383, gnl\|tetNig1\|chr5 (10120382-10120673)
	153-383, gnl\|xenTro1\|scaffold_27 (3009725-3010017)

	535-756, gnl\|bosTau2\|chr10 (42328115-42327894)
	535-756, gnl\|Hg17\|chr15 (47076077-47075856)
	535-756, gnl\|Mm7\|chr2 (125484888-125484667)