Non-Coding RNA Search

Ss1.1-Lng1-LNG010075E08.5

Sequence:


               
               GGCAGGAGAGCAAGTTATTAGGTGGCTTAAGATGACTTGAGTCCATTGTGCTATTTTTTT
AGCACATGTCCTCCCCCTTGTTTGATTCGGATTCCATGAGTGACTTGTCTTTCCCTGGGA
AAGGGATTAGGAGAGTGGTCCCTAACAACTCAGGCTTTGGTCAGGCTGCCTTTGGTTAGT
TGTGTTTTTGTCAGTTTCTTTCTCTGTACCTTGACTTACCTCGAATCAGAAAGCAAGCCT
GGGCAGCTGGAAGAGGCATCTCTGCTCGGCATCGCCCGGTCTAACCAGGGAGGCTGGCTG
TCCACCGTCCCTGTCCACTAGTGGGGAGGGCCGGCAGGTGTCAGTATGAACTCAGGAATA
GAAACATGAGGCCTTTAAAATAAGAGGGAGAAAAAAAATCCGTGATGCATACCTGTAACC
CCCTAGAACCCAAGTGCCAGAATTAATTCCTAGATGCTGCTTCTGTTTGAACAAGTCACT
GCTTTTACACTTGAAAAAACACTCAAAAGATGTTCAACTCCATGAAGAATGTTTTTGGCT
TTAAGAAGTTGTTTGGTGTTTAACTGTTTCCTTTGATTGCCATTCCACCAGTAAATCATT
GATTGATTTGCACTGCACACTGGGGTTGGGGTTGAGGGGAGGGTCCCACAAAGAGCCGAA
CTCAGGCCTGCCCAGGAAGTGAACTAGGGGATGTGGAGGTCACTGGTATTTCCTGGGGTA
AAGGGGCAGGAGGTAATTGTTTCTCCCTGAGCCCACTCTTGGCAGCACTTGTCACCAGGC
TGGCGCGAAGTCAGGCCTTTCCCTTCTGTGAGCATCTCGTCACTGTCCCAACAGCAGGTG
GAATGGGTGCAGGGGGACAAGACCAGACCTATTTTCCGGCCCCAGCTTTTCCAACTTTTG
CTGTGCCAAATGTTTAAAATTTTGCAAATATAAATCTTGAAATTTTATTACTCAAGAATC
TGTTCATGCAACCTGTTAGCCTTTTTGACTATAGAGAAGAAAATAGTAGAGATCCTTTCA
GGGCATCCAGCCTTGTTGAGCTGTTTTTTGTTGTGTTTGTTTTCTAAGAACAGCTAGGAG
TGAAATATAAACAATTCACTAAGTCTCTTCAATCCCCAGTTTGCAAGCTGCACTGCATTA
AACCCAGCTCGCTAACTAACACAGGGAATTACCGCACCCTAGTCCTCAGTGGGCCAAGAA
ACTTTCAGAAGCATTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGAGAGCAAGTTATTAGGTGGCTTAAGATGACTTGAGTCCATTGTGCTATTTTTTT
AGCACATGTCCTCCCCCTTGTTTGATTCGGATTCCATGAGTGACTTGTCTTTCCCTGGGA
AAGGGATTAGGAGAGTGGTCCCTAACAACTCAGGCTTTGGTCAGGCTGCCTTTGGTTAGT
TGTGTTTTTGTCAGTTTCTTTCTCTGTACCTTGACTTACCTCGAATCAGAAAGCAAGCCT
GGGCAGCTGGAAGAGGCATCTCTGCTCGGCATCGCCCGGTCTAACCAGGGAGGCTGGCTG
TCCACCGTCCCTGTCCACTAGTGGGGAGGGCCGGCAGGTGTCAGTATGAACTCAGGAATA
GAAACATGAGGCCTTTAAAATAAGAGGGAGAAAAAAAATCCGTGATGCATACCTGTAACC
CCCTAGAACCCAAGTGCCAGAATTAATTCCTAGATGCTGCTTCTGTTTGAACAAGTCACT
GCTTTTACACTTGAAAAAACACTCAAAAGATGTTCAACTCCATGAAGAATGTTTTTGGCT
TTAAGAAGTTGTTTGGTGTTTAACTGTTTCCTTTGATTGCCATTCCACCAGTAAATCATT
GATTGATTTGCACTGCACACTGGGGTTGGGGTTGAGGGGAGGGTCCCACAAAGAGCCGAA
CTCAGGCCTGCCCAGGAAGTGAACTAGGGGATGTGGAGGTCACTGGTATTTCCTGGGGTA
AAGGGGCAGGAGGTAATTGTTTCTCCCTGAGCCCACTCTTGGCAGCACTTGTCACCAGGC
TGGCGCGAAGTCAGGCCTTTCCCTTCTGTGAGCATCTCGTCACTGTCCCAACAGCAGGTG
GAATGGGTGCAGGGGGACAAGACCAGACCTATTTTCCGGCCCCAGCTTTTCCAACTTTTG
CTGTGCCAAATGTTTAAAATTTTGCAAATATAAATCTTGAAATTTTATTACTCAAGAATC
TGTTCATGCAACCTGTTAGCCTTTTTGACTATAGAGAAGAAAATAGTAGAGATCCTTTCA
GGGCATCCAGCCTTGTTGAGCTGTTTTTTGTTGTGTTTGTTTTCTAAGAACAGCTAGGAG
TGAAATATAAACAATTCACTAAGTCTCTTCAATCCCCAGTTTGCAAGCTGCACTGCATTA
AACCCAGCTCGCTAACTAACACAGGGAATTACCGCACCCTAGTCCTCAGTGGGCCAAGAA
ACTTTCAGAAGCATTAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               636-873, + strand, RNAz p=0.998955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               636-873, + strand, RNAz p=0.998955

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1224, gnl|bosTau2|chr3 (10137030-10135865)
               

               
               2-1224, gnl|Hg17|chr1 (153905854-153904641)
               

               
               2-1224, gnl|Mm7|chr3 (87652281-87653393)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1224, gnl|bosTau2|chr3 (10137030-10135865)
               

               
               2-1224, gnl|Hg17|chr1 (153905854-153904641)
               

               
               2-1224, gnl|Mm7|chr3 (87652281-87653393)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               csk (0.281492)
               

               
               clu (0.239292)
               

               
               cty (0.20816)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               clu (0.239292)
               

               
               cty (0.20816)
               

               
               cje (0.165235)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	2-1224, gnl\|bosTau2\|chr3 (10137030-10135865)
	2-1224, gnl\|Hg17\|chr1 (153905854-153904641)
	2-1224, gnl\|Mm7\|chr3 (87652281-87653393)

	csk (0.281492)
	clu (0.239292)
	cty (0.20816)
	cje (0.165235)
	lun (0.150489)
	spl (0.143184)
	tra (0.123092)
	cly (0.120642)
	med (0.116252)
	nbm (0.0993246)
	ldo (0.0970026)