Non-Coding RNA Search

Ss1.1-Lng1-LNG010075F11.5

Sequence:


               
               CCACGCCCTCTACTTGGCTGAGAACCACGCACATCACGAGTGGTACTTGAAGATCCAGCT
AGAGGACATCAAGAATTATCAGGAAGCCCTTCGGTACATCGGAAAGCTGCCTTTTGAGCA
GGCAGAGAGCAACATGAAACGCTATGGCAGGGCCCATCTTTGCCAACAACCCTCGGGAGT
TGAAAGCTTTCCTAGAGCACATGAGTGAGGTACAGCCTGACTCCCCACAGGGCATCTACG
ACACACTCCTTGAACTGCGACTCCAGAACTGGGCCCACGAGGAAGATCCGCAGGTCAAAG
AGAAGCTTCACGCGGAGGCCATCTCTCTCCTGAAGAGTGGTCGCTTCTGTGACGTCTTTG
ACAAAGCCCTGGTCCTCTGCCAGATGCACGACTTCCAGGATGGGGTCCTTTACCTCTATG
AGCAGGGGAAACTGTTCCAGCAGATCATGCACTACCACATGCAGCACGAGCAGTACCGGC
AGGTGATCGCCGTGTGCGAGCGCCACGGGGAGCAGGAGCCCTCCCTGTGGGAGCAGGCGC
TCAGCTACTTCGCCCGCAAGGAGGAGGACTGCAAGGAGTATGTGGCGGCCGTGCTCAAGC
ACATCGAGAGCAAGAATCTCATGCCACCCCTTCTAGTGGTGCAGACCTTGGCCCACAATT
CCACAGCCACCCTGTCTGTCATTCGGGACTACCTGGTCCAAAAGCTGCAGAAACAGAGCC
AGCAAATCGCCCAGGATGAGCTCCGGGTGCGGCGCTACCGAGAGGAGACCACCCGCATCC
GCCAGGAGATCCAGGAGCTGAAGGCAAGTCCAAAGATTTTCCAGAAGACCAAGTGCAGCA
TCTGTAACAGTGCCTTGGAGTTGCCCTCTGTCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCCCTCTACTTGGCTGAGAACCACGCACATCACGAGTGGTACTTGAAGATCCAGCT
AGAGGACATCAAGAATTATCAGGAAGCCCTTCGGTACATCGGAAAGCTGCCTTTTGAGCA
GGCAGAGAGCAACATGAAACGCTATGGCAGGGCCCATCTTTGCCAACAACCCTCGGGAGT
TGAAAGCTTTCCTAGAGCACATGAGTGAGGTACAGCCTGACTCCCCACAGGGCATCTACG
ACACACTCCTTGAACTGCGACTCCAGAACTGGGCCCACGAGGAAGATCCGCAGGTCAAAG
AGAAGCTTCACGCGGAGGCCATCTCTCTCCTGAAGAGTGGTCGCTTCTGTGACGTCTTTG
ACAAAGCCCTGGTCCTCTGCCAGATGCACGACTTCCAGGATGGGGTCCTTTACCTCTATG
AGCAGGGGAAACTGTTCCAGCAGATCATGCACTACCACATGCAGCACGAGCAGTACCGGC
AGGTGATCGCCGTGTGCGAGCGCCACGGGGAGCAGGAGCCCTCCCTGTGGGAGCAGGCGC
TCAGCTACTTCGCCCGCAAGGAGGAGGACTGCAAGGAGTATGTGGCGGCCGTGCTCAAGC
ACATCGAGAGCAAGAATCTCATGCCACCCCTTCTAGTGGTGCAGACCTTGGCCCACAATT
CCACAGCCACCCTGTCTGTCATTCGGGACTACCTGGTCCAAAAGCTGCAGAAACAGAGCC
AGCAAATCGCCCAGGATGAGCTCCGGGTGCGGCGCTACCGAGAGGAGACCACCCGCATCC
GCCAGGAGATCCAGGAGCTGAAGGCAAGTCCAAAGATTTTCCAGAAGACCAAGTGCAGCA
TCTGTAACAGTGCCTTGGAGTTGCCCTCTGTCCACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|15082293|gb|AAH12051.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15082293|gb|AAH12051.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               473-636, + strand, RNAz p=0.870214

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               473-636, + strand, RNAz p=0.870214

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               153-295, gnl|bosTau2|chr15 (14269933-14270075)
               

               
               153-295, gnl|canFam2|chr5 (17786965-17786765)
               

               
               153-295, gnl|danRer3|chr1 (53333796-53333986)
               

               
               153-295, gnl|dasNov1|scaffold_33675 (683-497)
               

               
               153-295, gnl|echTel1|scaffold_311361 (120400-120586)
               

               
               153-295, gnl|fr1|chrUn (249412716-249412888)
               

               
               153-295, gnl|galGal2|chr24 (49368-49180)
               

               
               153-295, gnl|hg17|chr11 (118454073-118454259)
               

               
               153-295, gnl|Hg17|chr11 (118454114-118454256)
               

               
               153-295, gnl|mm7|chr9 (44288364-44288181)
               

               
               153-295, gnl|Mm7|chr9 (44288322-44288180)
               

               
               153-295, gnl|monDom2|scaffold_2 (119521188-119521001)
               

               
               153-295, gnl|oryCun1|scaffold_136212 (16793-16607)
               

               
               153-295, gnl|panTro1|chr9 (120468754-120468940)
               

               
               153-295, gnl|rheMac2|chr14 (117484473-117484659)
               

               
               153-295, gnl|rn3|chr8 (47340060-47339876)
               

               
               153-295, gnl|tetNig1|chr7 (1152801-1152615)
               

               
               153-295, gnl|xenTro1|scaffold_18 (397564-397751)
               


               
               434-636, gnl|bosTau2|chr15 (14270732-14270934)
               

               
               434-636, gnl|Hg17|chr11 (118454715-118454917)
               

               
               434-636, gnl|Mm7|chr9 (44287456-44287254)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-295, gnl|bosTau2|chr15 (14269933-14270075)
               

               
               153-295, gnl|canFam2|chr5 (17786965-17786765)
               

               
               153-295, gnl|danRer3|chr1 (53333796-53333986)
               

               
               153-295, gnl|dasNov1|scaffold_33675 (683-497)
               

               
               153-295, gnl|echTel1|scaffold_311361 (120400-120586)
               

               
               153-295, gnl|fr1|chrUn (249412716-249412888)
               

               
               153-295, gnl|galGal2|chr24 (49368-49180)
               

               
               153-295, gnl|hg17|chr11 (118454073-118454259)
               

               
               153-295, gnl|Hg17|chr11 (118454114-118454256)
               

               
               153-295, gnl|mm7|chr9 (44288364-44288181)
               

               
               153-295, gnl|Mm7|chr9 (44288322-44288180)
               

               
               153-295, gnl|monDom2|scaffold_2 (119521188-119521001)
               

               
               153-295, gnl|oryCun1|scaffold_136212 (16793-16607)
               

               
               153-295, gnl|panTro1|chr9 (120468754-120468940)
               

               
               153-295, gnl|rheMac2|chr14 (117484473-117484659)
               

               
               153-295, gnl|rn3|chr8 (47340060-47339876)
               

               
               153-295, gnl|tetNig1|chr7 (1152801-1152615)
               

               
               153-295, gnl|xenTro1|scaffold_18 (397564-397751)
               


               
               434-636, gnl|bosTau2|chr15 (14270732-14270934)
               

               
               434-636, gnl|Hg17|chr11 (118454715-118454917)
               

               
               434-636, gnl|Mm7|chr9 (44287456-44287254)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	153-295, gnl\|bosTau2\|chr15 (14269933-14270075)
	153-295, gnl\|canFam2\|chr5 (17786965-17786765)
	153-295, gnl\|danRer3\|chr1 (53333796-53333986)
	153-295, gnl\|dasNov1\|scaffold_33675 (683-497)
	153-295, gnl\|echTel1\|scaffold_311361 (120400-120586)
	153-295, gnl\|fr1\|chrUn (249412716-249412888)
	153-295, gnl\|galGal2\|chr24 (49368-49180)
	153-295, gnl\|hg17\|chr11 (118454073-118454259)
	153-295, gnl\|Hg17\|chr11 (118454114-118454256)
	153-295, gnl\|mm7\|chr9 (44288364-44288181)
	153-295, gnl\|Mm7\|chr9 (44288322-44288180)
	153-295, gnl\|monDom2\|scaffold_2 (119521188-119521001)
	153-295, gnl\|oryCun1\|scaffold_136212 (16793-16607)
	153-295, gnl\|panTro1\|chr9 (120468754-120468940)
	153-295, gnl\|rheMac2\|chr14 (117484473-117484659)
	153-295, gnl\|rn3\|chr8 (47340060-47339876)
	153-295, gnl\|tetNig1\|chr7 (1152801-1152615)
	153-295, gnl\|xenTro1\|scaffold_18 (397564-397751)

	434-636, gnl\|bosTau2\|chr15 (14270732-14270934)
	434-636, gnl\|Hg17\|chr11 (118454715-118454917)
	434-636, gnl\|Mm7\|chr9 (44287456-44287254)