Ss1.1-Lng1-LNG010076C05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCGCCGGGCGCTCTAGTACGACTGCAGCACTGGGAGAACCATGAAGCCCCTCGCTGG CGGGCTCCCCTGCTTCTTGACTTTCGGGCTGTGGCTGGGGCTGCTACTTCTGTGCAGCTG GGGGTGCCCCGGGAGCGCCGCGCCGCGGTCCCCGCCAGAGAAGATCGCGGTCATTGGAGC TGGAATTGGTGGCACTTCAGCAGCCTATTATCTGCGGCAGAAATTTGGGAAAGATGTGAA GATTGATGTTTTTGAAAAAGGAGAGGTGGGCGGCCGTTTGGCGACCCTGACTATGCAGGG GCAAGAATATGAGTCAGGAGGTTCTATCATCCATCCTTTAAATCTGCACATGAAGCGTTT TGTCAAGGACCTGGGTCTCTCTGCTGTTCAAAGCCCTAGTGGCCTAGTGGGGGTGTATAA TGGAGAGACTCTGGTGTATGAGGAGAGCAGCTGGTTTATAATTAACATGATTAAACTGAT TTGGTACTATGGATTTCAGTCCCTCCGAATGCACATGTGGGTAGAGGATATATTAGACAA GTTCATGAGGATCTACCGCTACCAATCTCATGACTATGCCTTCAGTAGTGTAGAAAAGTT ACTGCATTCCCTAGGAGGGGACGACTTCCTTGGATTATTTAACCGATCACTTCTTGAAAC CTTGCAGAAAGCAGGCTTCTCTGAGAAATTCCTAGATGAAATTATAACGCCTGTCATGAG GGTCAATTATGGCCAAACCATGAACATCAATGGCTTTGTGGGAGCCGTGTCAATGTCCTG TACTGATCCTGGCCTTTGGGCAGTAAAAGGCGGCAATAAACTTGTTTGCTCACGGCTCCT CCAGGCTTCCAAAAGCAATCTTATATCAGGCTCAGTAATGTCCATAGAGGAGAAAACGAG GACCAAGCAGACAGGAAATCCTACAAAGGTGTATGAAGTGGTCTACCAAACCGGACCTGA GATCCATTCGGACTTCTATGACATCGTCCTAGTGGCCACTCCACTGAATCAAAAAATGTC CAATATAACTTTTCTTAACTTTGATCCCCCAATTGAGGAATTCCATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCGCCGGGCGCTCTAGTACGACTGCAGCACTGGGAGAACCATGAAGCCCCTCGCTGG CGGGCTCCCCTGCTTCTTGACTTTCGGGCTGTGGCTGGGGCTGCTACTTCTGTGCAGCTG GGGGTGCCCCGGGAGCGCCGCGCCGCGGTCCCCGCCAGAGAAGATCGCGGTCATTGGAGC TGGAATTGGTGGCACTTCAGCAGCCTATTATCTGCGGCAGAAATTTGGGAAAGATGTGAA GATTGATGTTTTTGAAAAAGGAGAGGTGGGCGGCCGTTTGGCGACCCTGACTATGCAGGG GCAAGAATATGAGTCAGGAGGTTCTATCATCCATCCTTTAAATCTGCACATGAAGCGTTT TGTCAAGGACCTGGGTCTCTCTGCTGTTCAAAGCCCTAGTGGCCTAGTGGGGGTGTATAA TGGAGAGACTCTGGTGTATGAGGAGAGCAGCTGGTTTATAATTAACATGATTAAACTGAT TTGGTACTATGGATTTCAGTCCCTCCGAATGCACATGTGGGTAGAGGATATATTAGACAA GTTCATGAGGATCTACCGCTACCAATCTCATGACTATGCCTTCAGTAGTGTAGAAAAGTT ACTGCATTCCCTAGGAGGGGACGACTTCCTTGGATTATTTAACCGATCACTTCTTGAAAC CTTGCAGAAAGCAGGCTTCTCTGAGAAATTCCTAGATGAAATTATAACGCCTGTCATGAG GGTCAATTATGGCCAAACCATGAACATCAATGGCTTTGTGGGAGCCGTGTCAATGTCCTG TACTGATCCTGGCCTTTGGGCAGTAAAAGGCGGCAATAAACTTGTTTGCTCACGGCTCCT CCAGGCTTCCAAAAGCAATCTTATATCAGGCTCAGTAATGTCCATAGAGGAGAAAACGAG GACCAAGCAGACAGGAAATCCTACAAAGGTGTATGAAGTGGTCTACCAAACCGGACCTGA GATCCATTCGGACTTCTATGACATCGTCCTAGTGGCCACTCCACTGAATCAAAAAATGTC CAATATAACTTTTCTTAACTTTGATCCCCCAATTGAGGAATTCCATCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 167-376, gnl|bosTau2|chr11 (49564937-49565146) | |
| 167-376, gnl|canFam2|chr10 (71963687-71963923) | |
| 167-376, gnl|danRer3|chrNA (66522293-66522541) | |
| 167-376, gnl|dasNov1|scaffold_22052 (14491-14736) | |
| 167-376, gnl|echTel1|scaffold_84764 (5025-4790) | |
| 167-376, gnl|fr1|chrUn (44038690-44038923) | |
| 167-376, gnl|galGal2|chr13 (7776845-7776607) | |
| 167-376, gnl|hg17|chr2 (70398118-70398356) | |
| 167-376, gnl|Hg17|chr2 (70398142-70398351) | |
| 167-376, gnl|loxAfr1|scaffold_34032 (30435-30207) | |
| 167-376, gnl|mm7|chr6 (86471240-86470995) | |
| 167-376, gnl|Mm7|chr6 (86471207-86470998) | |
| 167-376, gnl|monDom2|scaffold_1 (93828934-93829174) | |
| 167-376, gnl|oryCun1|scaffold_212729 (79301-79060) | |
| 167-376, gnl|panTro1|chr12_random (26202354-26202116) | |
| 167-376, gnl|rheMac2|chr13 (70537893-70538131) | |
| 167-376, gnl|rn3|chr4 (120823786-120823543) | |
| 167-376, gnl|tetNig1|chr4 (1370084-1369859) | |
| 167-376, gnl|xenTro1|scaffold_110 (1681278-1681057) | |
| 542-762, gnl|bosTau2|chr11 (49573041-49573261) | |
| 542-762, gnl|canFam2|chr10 (71977055-71977302) | |
| 542-762, gnl|danRer3|chrNA (66528303-66528554) | |
| 542-762, gnl|dasNov1|scaffold_36169 (7424-7171) | |
| 542-762, gnl|echTel1|scaffold_305956 (13604-13352) | |
| 542-762, gnl|fr1|chrUn (44039521-44039751) | |
| 542-762, gnl|galGal2|chrUn (141302016-141301758) | |
| 542-762, gnl|hg17|chr2 (70413716-70413967) | |
| 542-762, gnl|Hg17|chr2 (70413734-70413954) | |
| 542-762, gnl|mm7|chr6 (86467462-86467211) | |
| 542-762, gnl|Mm7|chr6 (86467440-86467222) | |
| 542-762, gnl|monDom2|scaffold_1 (93836547-93836802) | |
| 542-762, gnl|oryCun1|scaffold_212729 (65503-65248) | |
| 542-762, gnl|panTro1|chr12 (72725525-72725776) | |
| 542-762, gnl|rheMac2|chr13 (70553404-70553654) | |
| 542-762, gnl|rn3|chr4 (120818579-120818327) | |
| 542-762, gnl|tetNig1|chr4 (1369544-1369314) | |
| 542-762, gnl|xenTro1|scaffold_110 (1676862-1676613) | |
| 913-1068, gnl|bosTau2|chr11 (49574480-49574635) | |
| 913-1068, gnl|Hg17|chr2 (70415515-70415670) | |
| 913-1068, gnl|Mm7|chr6 (86464459-86464304) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 167-376, gnl|bosTau2|chr11 (49564937-49565146) | |
| 167-376, gnl|canFam2|chr10 (71963687-71963923) | |
| 167-376, gnl|danRer3|chrNA (66522293-66522541) | |
| 167-376, gnl|dasNov1|scaffold_22052 (14491-14736) | |
| 167-376, gnl|echTel1|scaffold_84764 (5025-4790) | |
| 167-376, gnl|fr1|chrUn (44038690-44038923) | |
| 167-376, gnl|galGal2|chr13 (7776845-7776607) | |
| 167-376, gnl|hg17|chr2 (70398118-70398356) | |
| 167-376, gnl|Hg17|chr2 (70398142-70398351) | |
| 167-376, gnl|loxAfr1|scaffold_34032 (30435-30207) | |
| 167-376, gnl|mm7|chr6 (86471240-86470995) | |
| 167-376, gnl|Mm7|chr6 (86471207-86470998) | |
| 167-376, gnl|monDom2|scaffold_1 (93828934-93829174) | |
| 167-376, gnl|oryCun1|scaffold_212729 (79301-79060) | |
| 167-376, gnl|panTro1|chr12_random (26202354-26202116) | |
| 167-376, gnl|rheMac2|chr13 (70537893-70538131) | |
| 167-376, gnl|rn3|chr4 (120823786-120823543) | |
| 167-376, gnl|tetNig1|chr4 (1370084-1369859) | |
| 167-376, gnl|xenTro1|scaffold_110 (1681278-1681057) | |
| 542-762, gnl|bosTau2|chr11 (49573041-49573261) | |
| 542-762, gnl|canFam2|chr10 (71977055-71977302) | |
| 542-762, gnl|danRer3|chrNA (66528303-66528554) | |
| 542-762, gnl|dasNov1|scaffold_36169 (7424-7171) | |
| 542-762, gnl|echTel1|scaffold_305956 (13604-13352) | |
| 542-762, gnl|fr1|chrUn (44039521-44039751) | |
| 542-762, gnl|galGal2|chrUn (141302016-141301758) | |
| 542-762, gnl|hg17|chr2 (70413716-70413967) | |
| 542-762, gnl|Hg17|chr2 (70413734-70413954) | |
| 542-762, gnl|mm7|chr6 (86467462-86467211) | |
| 542-762, gnl|Mm7|chr6 (86467440-86467222) | |
| 542-762, gnl|monDom2|scaffold_1 (93836547-93836802) | |
| 542-762, gnl|oryCun1|scaffold_212729 (65503-65248) | |
| 542-762, gnl|panTro1|chr12 (72725525-72725776) | |
| 542-762, gnl|rheMac2|chr13 (70553404-70553654) | |
| 542-762, gnl|rn3|chr4 (120818579-120818327) | |
| 542-762, gnl|tetNig1|chr4 (1369544-1369314) | |
| 542-762, gnl|xenTro1|scaffold_110 (1676862-1676613) | |
| 913-1068, gnl|bosTau2|chr11 (49574480-49574635) | |
| 913-1068, gnl|Hg17|chr2 (70415515-70415670) | |
| 913-1068, gnl|Mm7|chr6 (86464459-86464304) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cty (0.20816) | |
| spl (0.143184) | |
| ste (0.135208) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| spl (0.143184) | |
| ste (0.135208) | |
| jca (0.11396) | |
| eje (0.0988338) |