Ss1.1-Lng1-LNG010077A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTAATTGAACAGGAAAGAGCCAGACTTCTCAGAGGTCAGTCTGTTCAACAAGTG CGGGGACCTCGTCCGAGCCCACCCCAGCAAAGAGAGCTTGCAGTGACCTCCCCAAAGGAT GGTAGGTTAGGAAGCAGTGAATTGGGGCCTTCTGTATGTTCAGCAAAGAGAGCTTGCAGT GACCTCCCCAAAGGATGGCTCCGTCTGCATTCTGGGTTCTGATGATGCCACCACTTGTCA CATTGTGGTCCTGAGGCACACAGGTAATGGGGCGACCTGCTTGACCCACTGCGACGGAAC TGACACCAAAGCTGAGGTCTCCCTGATCATGAGCTCCATTAAATCCTTTTCCGACCACAC TCAACGTGGAAGGCTGGAAGTGCATCTCGTGGGAGGCTTCAGTGACGACAGGCAGTTGTC ACAAAAACTCACTCATCAGCTTCTTAGTGAATTTGACAGACAAGAAGACGACATTCACTT GGTGACATTATGTGTGACAGAATTAAATGACCGGGAAGAAAATGAAAACCACTTTCCAAT CATTTACGGCATAGCTGTCAACGTGAAGACTGCGGAGATCTACAGAGCCTCCTTCCCAGA CCGAGGCCCGGAGGAGGAGCTGCGTGCCGCGCGAGTCTTAACCGGAGGACCAATGATTAG TATTTACGATGCCAAGACAGAACAGCTTCGTATAGGACCGTATTCCTGGATGCCGTTTCC CCATGTGGATTTCTGGTTACAGCAGGATGATAAGCAAATATTAGAGAACCTTTCCACATC ACCGCTGGCCGAGCCCCCCCACTTTGTGGAACATATTAGATCCACCTTGATGTTTTTAAA AAAATACCCTTCGCCAACGAACACGCTGTTTCCTGGAAATAAAGCTCTGCTGTACAAGAA GAATGAAGATGGCTTATGGAAGGAGATCTCTTCCGGAGGCGAAACCTAGGAATTACCAAA GCAAGCAACTTCTGGCCTGGCAAAGACTGCCAGCGGGGGCAGGAGAGACCATGCGTTTGG ACTCTACATCCATGAGTTTTAGGTTCTTTTCCTTCCTCAGTGTCTTTCAGATGACTTTAA AATAAAATCTTATTTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTAATTGAACAGGAAAGAGCCAGACTTCTCAGAGGTCAGTCTGTTCAACAAGTG CGGGGACCTCGTCCGAGCCCACCCCAGCAAAGAGAGCTTGCAGTGACCTCCCCAAAGGAT GGTAGGTTAGGAAGCAGTGAATTGGGGCCTTCTGTATGTTCAGCAAAGAGAGCTTGCAGT GACCTCCCCAAAGGATGGCTCCGTCTGCATTCTGGGTTCTGATGATGCCACCACTTGTCA CATTGTGGTCCTGAGGCACACAGGTAATGGGGCGACCTGCTTGACCCACTGCGACGGAAC TGACACCAAAGCTGAGGTCTCCCTGATCATGAGCTCCATTAAATCCTTTTCCGACCACAC TCAACGTGGAAGGCTGGAAGTGCATCTCGTGGGAGGCTTCAGTGACGACAGGCAGTTGTC ACAAAAACTCACTCATCAGCTTCTTAGTGAATTTGACAGACAAGAAGACGACATTCACTT GGTGACATTATGTGTGACAGAATTAAATGACCGGGAAGAAAATGAAAACCACTTTCCAAT CATTTACGGCATAGCTGTCAACGTGAAGACTGCGGAGATCTACAGAGCCTCCTTCCCAGA CCGAGGCCCGGAGGAGGAGCTGCGTGCCGCGCGAGTCTTAACCGGAGGACCAATGATTAG TATTTACGATGCCAAGACAGAACAGCTTCGTATAGGACCGTATTCCTGGATGCCGTTTCC CCATGTGGATTTCTGGTTACAGCAGGATGATAAGCAAATATTAGAGAACCTTTCCACATC ACCGCTGGCCGAGCCCCCCCACTTTGTGGAACATATTAGATCCACCTTGATGTTTTTAAA AAAATACCCTTCGCCAACGAACACGCTGTTTCCTGGAAATAAAGCTCTGCTGTACAAGAA GAATGAAGATGGCTTATGGAAGGAGATCTCTTCCGGAGGCGAAACCTAGGAATTACCAAA GCAAGCAACTTCTGGCCTGGCAAAGACTGCCAGCGGGGGCAGGAGAGACCATGCGTTTGG ACTCTACATCCATGAGTTTTAGGTTCTTTTCCTTCCTCAGTGTCTTTCAGATGACTTTAA AATAAAATCTTATTTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-266, gnl|bosTau2|chr25 (14417986-14417721) | |
| 1-266, gnl|Hg17|chr16 (15049474-15049210) | |
| 1-266, gnl|Mm7|chr16 (13373375-13373636) | |
| 550-656, gnl|bosTau2|chr25 (14412461-14412355) | |
| 550-656, gnl|canFam2|chr6 (31496081-31496228) | |
| 550-656, gnl|dasNov1|scaffold_22690 (16369-16522) | |
| 550-656, gnl|echTel1|scaffold_305916 (793-645) | |
| 550-656, gnl|fr1|chrUn (249132494-249132377) | |
| 550-656, gnl|galGal2|chr14 (2278751-2278869) | |
| 550-656, gnl|hg17|chr16 (15041317-15041471) | |
| 550-656, gnl|Hg17|chr16 (15041429-15041323) | |
| 550-656, gnl|loxAfr1|scaffold_12525 (58354-58200) | |
| 550-656, gnl|mm7|chr16 (13378954-13378800) | |
| 550-656, gnl|Mm7|chr16 (13378839-13378946) | |
| 550-656, gnl|monDom2|scaffold_17 (28011640-28011789) | |
| 550-656, gnl|oryCun1|scaffold_204704 (69154-69005) | |
| 550-656, gnl|panTro1|chr18 (15441316-15441470) | |
| 550-656, gnl|rheMac2|chr20 (14970689-14970535) | |
| 550-656, gnl|rn3|chr10 (1543027-1542875) | |
| 765-1102, gnl|bosTau2|chr25 (14410577-14410233) | |
| 765-1102, gnl|canFam2|chr6 (31494076-31494350) | |
| 765-1102, gnl|dasNov1|scaffold_45789 (1822-1556) | |
| 765-1102, gnl|echTel1|scaffold_305916 (3509-3251) | |
| 765-1102, gnl|hg17|chr1 (232423463-232423806) | |
| 765-1102, gnl|Hg17|chr16 (15039570-15039215) | |
| 765-1102, gnl|loxAfr1|scaffold_5086 (43006-43267) | |
| 765-1102, gnl|mm7|chr16 (13381954-13381704) | |
| 765-1102, gnl|Mm7|chr16 (13381641-13381953) | |
| 765-1102, gnl|monDom2|scaffold_17 (28008779-28009067) | |
| 765-1102, gnl|panTro1|chr1 (216251766-216252111) | |
| 765-1102, gnl|rheMac2|chr1 (221082255-221081896) | |
| 765-1102, gnl|rn3|chr15 (26752726-26752461) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-266, gnl|bosTau2|chr25 (14417986-14417721) | |
| 1-266, gnl|Hg17|chr16 (15049474-15049210) | |
| 1-266, gnl|Mm7|chr16 (13373375-13373636) | |
| 550-656, gnl|bosTau2|chr25 (14412461-14412355) | |
| 550-656, gnl|canFam2|chr6 (31496081-31496228) | |
| 550-656, gnl|dasNov1|scaffold_22690 (16369-16522) | |
| 550-656, gnl|echTel1|scaffold_305916 (793-645) | |
| 550-656, gnl|fr1|chrUn (249132494-249132377) | |
| 550-656, gnl|galGal2|chr14 (2278751-2278869) | |
| 550-656, gnl|hg17|chr16 (15041317-15041471) | |
| 550-656, gnl|Hg17|chr16 (15041429-15041323) | |
| 550-656, gnl|loxAfr1|scaffold_12525 (58354-58200) | |
| 550-656, gnl|mm7|chr16 (13378954-13378800) | |
| 550-656, gnl|Mm7|chr16 (13378839-13378946) | |
| 550-656, gnl|monDom2|scaffold_17 (28011640-28011789) | |
| 550-656, gnl|oryCun1|scaffold_204704 (69154-69005) | |
| 550-656, gnl|panTro1|chr18 (15441316-15441470) | |
| 550-656, gnl|rheMac2|chr20 (14970689-14970535) | |
| 550-656, gnl|rn3|chr10 (1543027-1542875) | |
| 765-1102, gnl|bosTau2|chr25 (14410577-14410233) | |
| 765-1102, gnl|canFam2|chr6 (31494076-31494350) | |
| 765-1102, gnl|dasNov1|scaffold_45789 (1822-1556) | |
| 765-1102, gnl|echTel1|scaffold_305916 (3509-3251) | |
| 765-1102, gnl|hg17|chr1 (232423463-232423806) | |
| 765-1102, gnl|Hg17|chr16 (15039570-15039215) | |
| 765-1102, gnl|loxAfr1|scaffold_5086 (43006-43267) | |
| 765-1102, gnl|mm7|chr16 (13381954-13381704) | |
| 765-1102, gnl|Mm7|chr16 (13381641-13381953) | |
| 765-1102, gnl|monDom2|scaffold_17 (28008779-28009067) | |
| 765-1102, gnl|panTro1|chr1 (216251766-216252111) | |
| 765-1102, gnl|rheMac2|chr1 (221082255-221081896) | |
| 765-1102, gnl|rn3|chr15 (26752726-26752461) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| cki (0.826173) | |
| sin (0.524843) | |
| pro (0.512033) | |
| spl (0.429553) | |
| csk (0.422238) | |
| aor (0.390549) | |
| elu (0.385356) | |
| duo (0.345602) | |
| fat (0.294855) | |
| liv (0.292569) | |
| pty (0.285429) | |
| nca (0.273748) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| cty (0.20816) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lin (0.145603) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.826173) | |
| sin (0.524843) | |
| pro (0.512033) | |
| spl (0.429553) | |
| csk (0.422238) | |
| aor (0.390549) | |
| elu (0.385356) | |
| duo (0.345602) | |
| fat (0.294855) | |
| liv (0.292569) | |
| pty (0.285429) | |
| nca (0.273748) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| mas (0.210305) | |
| cty (0.20816) | |
| fli (0.202881) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cje (0.165235) | |
| nco (0.161734) | |
| lin (0.145603) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |