Ss1.1-Lng1-LNG010078E06.5
|
CTTGCATCCCAGATAATTGAGAACTTATTTCCTGGCCAGTCTTCCCCCACCAAGTGTTCA
AAGAGCTGGCCTTTCATTTTTGGTTGGCCCTTGTCATTGTACACTTGGACTCTCGTAACT
CTTCTAACCCTATGGTAACAAAGCTGTCTGCGCAGAGTGTCCCATTGTGGAGAAAATTTC
AAAGTGTCTGGTAGGAGCTCTTGTTCTTGACTTTGGTTTTTAGGACTCTGAGCCTCCATT
AGTCTCTGTACCCTGGTAGGCTTCAGTCCTCAGCTGAGGGCAAAGTCTCAACAGTGAGGA
AAGATGGCAAACCAGATGCTTTAGTGAGAAAAAGAAGGTGGAGTGGGAGCCTTTGCACCT
TAGGGGTATGTATTCACACAGTCCTTGGGGCTCAGCCTCTGAGGTAAGTGGAACTAGAGG
GCTCTGCTCTTCTTTCCATCCCTTCTATCACTCCCTCATTGCTGTGGACCAATGCATCTC
TCAAGAGGCAAATATTACCCAGCAGGCAGTCTTCCTTGTCCTTTGCAATTGCTCTTCTCC
ATGTCTTTCCTGCTACAAGTGTTTTAAATGTTACTACCTTATTTTCCCCTAAGTTTTACT
CCTCTCTTTGCAAACAGAAGATACCACACCTGGACTTAAAGTCTAAGAAAGCCAGTCACT
TTCAGGGTAAGGGCTCCTCCCTCTTTTCCTCCCTCTCTGGCACTGAGCCACTCCCCTGCC
CCCTCTGCAGAATGTTACTGCAGCACTTGTGTCTGCCAGGGGTAACTTGGCCACTGTCCT
TGTCCTTCTACAGAACCTGAGGGAGAAGGTGGCAGCTGTGTCTCTCCCCAAGTAATGTCA
CTAATTCTGTTCCTTCTCTTTAGCAGTTGGCTTAACCACTCTTGAGTCACAGGTGTGGGG
TGGGAGGGGAGAGAGGCACTCAAGCTGTAACCCCCAAGCATGAAATGACTGAGAGATTCT
TCTAGGGGTAGCTGGTGGTTGTGCCTTTTGTAGGCTTTTCCCTTTGCCTTAAACCTGAAG
ATGTCTCCTCAAGCCAATGGGCAGCATGCCCAGATTCCCAGACCTTAAGACACTGTGACA
GCTGTCTCTGTTGGTCCACTGTGTTTTGTTGCAAGAATTTCTCCACATGTATTGTTGTTG
TTTGTTACTGTTTTAACGGGTGCACATATGTGATTGCCATTGTATCTTTGGAGATAATAA
AATTTAGACATGTAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTGCATCCCAGATAATTGAGAACTTATTTCCTGGCCAGTCTTCCCCCACCAAGTGTTCA
AAGAGCTGGCCTTTCATTTTTGGTTGGCCCTTGTCATTGTACACTTGGACTCTCGTAACT
CTTCTAACCCTATGGTAACAAAGCTGTCTGCGCAGAGTGTCCCATTGTGGAGAAAATTTC
AAAGTGTCTGGTAGGAGCTCTTGTTCTTGACTTTGGTTTTTAGGACTCTGAGCCTCCATT
AGTCTCTGTACCCTGGTAGGCTTCAGTCCTCAGCTGAGGGCAAAGTCTCAACAGTGAGGA
AAGATGGCAAACCAGATGCTTTAGTGAGAAAAAGAAGGTGGAGTGGGAGCCTTTGCACCT
TAGGGGTATGTATTCACACAGTCCTTGGGGCTCAGCCTCTGAGGTAAGTGGAACTAGAGG
GCTCTGCTCTTCTTTCCATCCCTTCTATCACTCCCTCATTGCTGTGGACCAATGCATCTC
TCAAGAGGCAAATATTACCCAGCAGGCAGTCTTCCTTGTCCTTTGCAATTGCTCTTCTCC
ATGTCTTTCCTGCTACAAGTGTTTTAAATGTTACTACCTTATTTTCCCCTAAGTTTTACT
CCTCTCTTTGCAAACAGAAGATACCACACCTGGACTTAAAGTCTAAGAAAGCCAGTCACT
TTCAGGGTAAGGGCTCCTCCCTCTTTTCCTCCCTCTCTGGCACTGAGCCACTCCCCTGCC
CCCTCTGCAGAATGTTACTGCAGCACTTGTGTCTGCCAGGGGTAACTTGGCCACTGTCCT
TGTCCTTCTACAGAACCTGAGGGAGAAGGTGGCAGCTGTGTCTCTCCCCAAGTAATGTCA
CTAATTCTGTTCCTTCTCTTTAGCAGTTGGCTTAACCACTCTTGAGTCACAGGTGTGGGG
TGGGAGGGGAGAGAGGCACTCAAGCTGTAACCCCCAAGCATGAAATGACTGAGAGATTCT
TCTAGGGGTAGCTGGTGGTTGTGCCTTTTGTAGGCTTTTCCCTTTGCCTTAAACCTGAAG
ATGTCTCCTCAAGCCAATGGGCAGCATGCCCAGATTCCCAGACCTTAAGACACTGTGACA
GCTGTCTCTGTTGGTCCACTGTGTTTTGTTGCAAGAATTTCTCCACATGTATTGTTGTTG
TTTGTTACTGTTTTAACGGGTGCACATATGTGATTGCCATTGTATCTTTGGAGATAATAA
AATTTAGACATGTAAAAAAAAAAAAAAAAAAAAAAA
|
|
176-292, - strand, RNAz p=0.654779 |
|
317-466, - strand, RNAz p=0.876281 |
|
333-457, - strand, RNAz p=0.938003 |
|
812-1090, - strand, RNAz p=0.912351 |
|
819-1128, + strand, RNAz p=0.975014 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
176-292, - strand, RNAz p=0.654779 |
|
317-466, - strand, RNAz p=0.876281 |
|
333-457, - strand, RNAz p=0.938003 |
|
812-1090, - strand, RNAz p=0.912351 |
|
819-1128, + strand, RNAz p=0.975014 |
|
5-1216, gnl|bosTau2|chr19 (34446848-34445644) |
|
5-1216, gnl|canFam2|chr9 (25733025-25731520) |
|
5-1216, gnl|dasNov1|scaffold_31768 (2110-593) |
|
5-1216, gnl|echTel1|scaffold_310535 (46525-47802) |
|
5-1216, gnl|hg17|chr17 (35580094-35581621) |
|
5-1216, gnl|Hg17|chr17 (35580724-35581946) |
|
5-1216, gnl|loxAfr1|scaffold_4088 (83396-81888) |
|
5-1216, gnl|mm7|chr11 (98941112-98942555) |
|
5-1216, gnl|Mm7|chr11 (98941754-98942841) |
|
5-1216, gnl|monDom2|scaffold_18 (49371603-49373117) |
|
5-1216, gnl|oryCun1|scaffold_207753 (4224-2716) |
|
5-1216, gnl|panTro1|chr19 (38819782-38821309) |
|
5-1216, gnl|rheMac2|chr16 (50281766-50283301) |
|
5-1216, gnl|rn3|chr10 (87616596-87618033) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-1216, gnl|bosTau2|chr19 (34446848-34445644) |
|
5-1216, gnl|canFam2|chr9 (25733025-25731520) |
|
5-1216, gnl|dasNov1|scaffold_31768 (2110-593) |
|
5-1216, gnl|echTel1|scaffold_310535 (46525-47802) |
|
5-1216, gnl|hg17|chr17 (35580094-35581621) |
|
5-1216, gnl|Hg17|chr17 (35580724-35581946) |
|
5-1216, gnl|loxAfr1|scaffold_4088 (83396-81888) |
|
5-1216, gnl|mm7|chr11 (98941112-98942555) |
|
5-1216, gnl|Mm7|chr11 (98941754-98942841) |
|
5-1216, gnl|monDom2|scaffold_18 (49371603-49373117) |
|
5-1216, gnl|oryCun1|scaffold_207753 (4224-2716) |
|
5-1216, gnl|panTro1|chr19 (38819782-38821309) |
|
5-1216, gnl|rheMac2|chr16 (50281766-50283301) |
|
5-1216, gnl|rn3|chr10 (87616596-87618033) |
|
clu (0.957167) |
|
cbe (0.478469) |
|
pla (0.401016) |
|
fcc (0.197785) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
tra (0.123092) |
|
eru (0.120048) |
|
ebs (0.118301) |
|
clu (0.957167) |
|
cbe (0.478469) |
|
pla (0.401016) |
|
fcc (0.197785) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
eli (0.151814) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
che (0.136314) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
tra (0.123092) |
|
eru (0.120048) |
|
ebs (0.118301) |
