Non-Coding RNA Search

Ss1.1-Lng1-LNG010079F11.5

Sequence:


               
               ACACCCTATTGGAGCCCGGGACGCGGCACCCCGGGGGAGGAGGGCGAAGAGACGCGGGGA
TGGCTCTGCGGGGACTCCCGGGGTCCGCCGTCCTCGCCGCTGCTGTCTTCGTGGGAGGCG
CCGTGAGTTCGCCACTCGTAGCCCCGGACAATGGTGGCAGCCGCATATTACATTCCGGAA
CCAAGACGACGCCCTCACCCACAAACAACACTGGGAATGGACACCCAGAATATATCGCGT
ATGCGCTCGTCCCCGTGTTCTTCATCATGGGTCTCTTTGGCGTCCTCATCTGCCACCTGC
TTAAGAAGAAAGGCTATCGTTGTACAACAGAAGCCGAGCAAGACGTGGAAGAGGAAAAGG
TTGAAAAGATAGAGATGAACGACAGCGTGAATGAAAATAGTGACACCGTTGGACAGATTG
TCCACTACATCATGAAAAATGAAGCAAATGCCGATGTTTTGAAGGCAATGGTGGCAGATA
ACAGCCTGTATGATCCTGAAAGCCCTGTGACCCCCAGCACTCCTGGGAGCCCGCCCGTGA
GCCCCGGGCCCTTGTCACCGGGAGGCACCCCAGGAAAGCACATCTGCGGCCACCATCTGC
ACACAGTGGGCGGTGCTGTCGAGCGGGACGTGTGTCATCGATGTAGGCATAAGCGGTGGC
ACTTCATCAGACCTGCCAACAAGTCCTGTATGATCCTGAAAGCCCTGTGACCCCCAGCAC
TCCTGGGAGCCCGCCCGTGAGCCCCGGGCCCTTGTCACCGGGAGGCACCCCAGGAAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCCTATTGGAGCCCGGGACGCGGCACCCCGGGGGAGGAGGGCGAAGAGACGCGGGGA
TGGCTCTGCGGGGACTCCCGGGGTCCGCCGTCCTCGCCGCTGCTGTCTTCGTGGGAGGCG
CCGTGAGTTCGCCACTCGTAGCCCCGGACAATGGTGGCAGCCGCATATTACATTCCGGAA
CCAAGACGACGCCCTCACCCACAAACAACACTGGGAATGGACACCCAGAATATATCGCGT
ATGCGCTCGTCCCCGTGTTCTTCATCATGGGTCTCTTTGGCGTCCTCATCTGCCACCTGC
TTAAGAAGAAAGGCTATCGTTGTACAACAGAAGCCGAGCAAGACGTGGAAGAGGAAAAGG
TTGAAAAGATAGAGATGAACGACAGCGTGAATGAAAATAGTGACACCGTTGGACAGATTG
TCCACTACATCATGAAAAATGAAGCAAATGCCGATGTTTTGAAGGCAATGGTGGCAGATA
ACAGCCTGTATGATCCTGAAAGCCCTGTGACCCCCAGCACTCCTGGGAGCCCGCCCGTGA
GCCCCGGGCCCTTGTCACCGGGAGGCACCCCAGGAAAGCACATCTGCGGCCACCATCTGC
ACACAGTGGGCGGTGCTGTCGAGCGGGACGTGTGTCATCGATGTAGGCATAAGCGGTGGC
ACTTCATCAGACCTGCCAACAAGTCCTGTATGATCCTGAAAGCCCTGTGACCCCCAGCAC
TCCTGGGAGCCCGCCCGTGAGCCCCGGGCCCTTGTCACCGGGAGGCACCCCAGGAAAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8IUW5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IUW5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               181-297, + strand, RNAz p=0.812721

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-297, + strand, RNAz p=0.812721

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               142-372, gnl|bosTau2|chr6 (29832417-29832647)
               

               
               142-372, gnl|Hg17|chr4 (37473695-37473464)
               

               
               142-372, gnl|Mm7|chr5 (63291938-63291704)
               


               
               501-686, gnl|bosTau2|chr6 (29848512-29848697)
               

               
               501-686, gnl|canFam2|chr3 (77361580-77361304)
               

               
               501-686, gnl|danRer3|chrNA (60693706-60693427)
               

               
               501-686, gnl|dasNov1|scaffold_59662 (2832-2555)
               

               
               501-686, gnl|echTel1|scaffold_245575 (4080-4362)
               

               
               501-686, gnl|galGal2|chr4 (70081404-70081130)
               

               
               501-686, gnl|hg17|chr4 (37459059-37459337)
               

               
               501-686, gnl|Hg17|chr4 (37459313-37459128)
               

               
               501-686, gnl|loxAfr1|scaffold_10619 (63874-64151)
               

               
               501-686, gnl|mm7|chr5 (63280870-63281158)
               

               
               501-686, gnl|Mm7|chr5 (63281125-63280940)
               

               
               501-686, gnl|monDom2|scaffold_26 (2465888-2466172)
               

               
               501-686, gnl|oryCun1|scaffold_204394 (59202-59480)
               

               
               501-686, gnl|panTro1|chr3 (40125460-40125738)
               

               
               501-686, gnl|rheMac2|chr5 (32611141-32611419)
               

               
               501-686, gnl|rn3|chr14 (47188090-47188369)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-372, gnl|bosTau2|chr6 (29832417-29832647)
               

               
               142-372, gnl|Hg17|chr4 (37473695-37473464)
               

               
               142-372, gnl|Mm7|chr5 (63291938-63291704)
               


               
               501-686, gnl|bosTau2|chr6 (29848512-29848697)
               

               
               501-686, gnl|canFam2|chr3 (77361580-77361304)
               

               
               501-686, gnl|danRer3|chrNA (60693706-60693427)
               

               
               501-686, gnl|dasNov1|scaffold_59662 (2832-2555)
               

               
               501-686, gnl|echTel1|scaffold_245575 (4080-4362)
               

               
               501-686, gnl|galGal2|chr4 (70081404-70081130)
               

               
               501-686, gnl|hg17|chr4 (37459059-37459337)
               

               
               501-686, gnl|Hg17|chr4 (37459313-37459128)
               

               
               501-686, gnl|loxAfr1|scaffold_10619 (63874-64151)
               

               
               501-686, gnl|mm7|chr5 (63280870-63281158)
               

               
               501-686, gnl|Mm7|chr5 (63281125-63280940)
               

               
               501-686, gnl|monDom2|scaffold_26 (2465888-2466172)
               

               
               501-686, gnl|oryCun1|scaffold_204394 (59202-59480)
               

               
               501-686, gnl|panTro1|chr3 (40125460-40125738)
               

               
               501-686, gnl|rheMac2|chr5 (32611141-32611419)
               

               
               501-686, gnl|rn3|chr14 (47188090-47188369)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	142-372, gnl\|bosTau2\|chr6 (29832417-29832647)
	142-372, gnl\|Hg17\|chr4 (37473695-37473464)
	142-372, gnl\|Mm7\|chr5 (63291938-63291704)

	501-686, gnl\|bosTau2\|chr6 (29848512-29848697)
	501-686, gnl\|canFam2\|chr3 (77361580-77361304)
	501-686, gnl\|danRer3\|chrNA (60693706-60693427)
	501-686, gnl\|dasNov1\|scaffold_59662 (2832-2555)
	501-686, gnl\|echTel1\|scaffold_245575 (4080-4362)
	501-686, gnl\|galGal2\|chr4 (70081404-70081130)
	501-686, gnl\|hg17\|chr4 (37459059-37459337)
	501-686, gnl\|Hg17\|chr4 (37459313-37459128)
	501-686, gnl\|loxAfr1\|scaffold_10619 (63874-64151)
	501-686, gnl\|mm7\|chr5 (63280870-63281158)
	501-686, gnl\|Mm7\|chr5 (63281125-63280940)
	501-686, gnl\|monDom2\|scaffold_26 (2465888-2466172)
	501-686, gnl\|oryCun1\|scaffold_204394 (59202-59480)
	501-686, gnl\|panTro1\|chr3 (40125460-40125738)
	501-686, gnl\|rheMac2\|chr5 (32611141-32611419)
	501-686, gnl\|rn3\|chr14 (47188090-47188369)