Ss1.1-Lng1-LNG010079G03.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCGTAAGTGCTAATACATTATCCTGACAAGTAGCAGTTCCACCTTGTACAGAGATAT CATGCGCATTATTTTTGCTCCTTTCATTAGACGAGGGTCGACTTTACAGGGAAGTTTATT CCTCAAGAAGTGGTGGACATAAAGAAGAAATGGAACTGTCTGAGAGCTTCCAAGGATCCT TTAAAACTGCCAAGGGAGCCTACAGTTTGAAGTCAAATTCTACAAATGGGTAGTTGGTGC TGTCTTTCAATGGTTCATTCTCCCGAACATTCTGAATGAATAAATCAACACAACATGCTA TTGAGACTGGGGATACGAAACAATACGATCCCCACCGTTGGGAATTCATTTGCAGGTGGG GGAGGCTGGCGTGGGAACACACCTTCCCAGGAAAGTGAGATCAGTGTTAGATGAGGAGTC CTGACAGGTGAAACAGGGGGCGCCCAGGAAGTATGCTTTGCCTGAAGGTTCTTCAGCGTT CCCCAGGCAGGCATAGGAATGGGACCAGATGGGGCAGCAGCTCCACGGGGCCCAGGGGCA GCTAGGATACCTTGGAGAACAGAATGGTTCTAGGGGTTGCACAAGAAAATGAGACACGGC TCAAGATTTCTGGATCACCCCTGGGTCTGGTAGTGACCATGGACTTGGTAACAGAGGAAC GACCCATCTTTTGCAAGAGGACACCGTCTTCAGGACGTCCCTGGAGTTTTTGGTCTGTTT TGAAGGAAACCGTGTATGCACCTTATACCTACGTTTGAGAAGAGAACGGGCAGCTGAAAA GAAAGCTTAGGAGGCCATGCAATTCCTGGACTCGCTTTAGAGGCGGACCAAGTGGTGTCT GACTGCAGTTGATTGACCCAGCCACGCATATGACACAGAGTTGCAGAGCGGGGCTCCTTT GGTCCACACTCCAAATAGGGGCCCAATGCAGCGTTTCTGTGACCCTCCCACAGTCCCAAA GCCGTTTAACTGTGGCCCCTACATCTCCATCATTTGCTTGTTCCCTTCTGATGACCGTCA TCAATGTCCTTGCTCCACTCACTCATAATCCCGTTAAAATGTAAATTAATCCCCTTGGAA GAAGGGCCAGGTTTTCTCTGTGCTCTTGAGATTTTGTGTTTTTCTTTTCTTTTTTTTTTA GTCATTGGAGGAACATTGGGCCACGGCTGTGTACATAGCACTGTGCTAGGCTCTTGGACC CCAAATGAACCCCTTTAACGTTGTGAAGAGGCAGCAGATCCTGGAGGAAAGTCATCTCTA CCTACTCCATTGAGAAGAAGAGGCTGGTCCCCAACTTGGCCTCCGATGCTCGTCCCTGCC CCCAAATAGCACGCAAGCTTGTTAATCTCAACTAGAACAAATGTTTAGATTCTGTAGATG TTAAAAAGCTTTCCTGAAAGTATTCGATTCTGCAGTGTTTATAGATGCACACTTTCCTCC GGAATTAACTGCTGACATTCCTTGGCTTTCTCATCCAGAAATTATGGAAACAGGGTCTGT CAGTGGCAGGAGGCTGGGCTGTGTCCTACATGGATGACACAGTGCTATTTCCTCGCCTCT TTACACCCATGCATGCTGCCCACCCGAAAAATGACATATAAACAGTATATAGATCAATGT CCACACATGTACACAACACACACACGCACACACAAGGCGTAACAAACACTAAAACAGTGT TGACTCTTGTCTCTGAAGACAAATCAAACATTTTTTTCCAACTAAAGAATGGATGTAATT AAACTATGTATTGAAAAAAAAAAAATAGCCTAAGTGTTTAGAGATGGTGACTATATCCAG TTTTAGTGACAGAACCAATTTCCTGAATTTTAAGCCTTCAGTGAGTGAGCTGCCAATTTT GATTTTGTGTTGCTCTTTACCCAAAGGACTTTTTAAATTTTTTTCCTTTTTGGAGGAGGG GGGCAAAAAGCAGCAATACTGTGTTTGAGAATTCTACTCTGTATCTGGCTCTCCTGTGTA CGTTAACCACTTAAATGTTATTATCCTGCTTCGGTTTTATAGTGATTGTGAGGCATTCGA TGCAAGTATACAATTATTTTCTCATTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCGTAAGTGCTAATACATTATCCTGACAAGTAGCAGTTCCACCTTGTACAGAGATAT CATGCGCATTATTTTTGCTCCTTTCATTAGACGAGGGTCGACTTTACAGGGAAGTTTATT CCTCAAGAAGTGGTGGACATAAAGAAGAAATGGAACTGTCTGAGAGCTTCCAAGGATCCT TTAAAACTGCCAAGGGAGCCTACAGTTTGAAGTCAAATTCTACAAATGGGTAGTTGGTGC TGTCTTTCAATGGTTCATTCTCCCGAACATTCTGAATGAATAAATCAACACAACATGCTA TTGAGACTGGGGATACGAAACAATACGATCCCCACCGTTGGGAATTCATTTGCAGGTGGG GGAGGCTGGCGTGGGAACACACCTTCCCAGGAAAGTGAGATCAGTGTTAGATGAGGAGTC CTGACAGGTGAAACAGGGGGCGCCCAGGAAGTATGCTTTGCCTGAAGGTTCTTCAGCGTT CCCCAGGCAGGCATAGGAATGGGACCAGATGGGGCAGCAGCTCCACGGGGCCCAGGGGCA GCTAGGATACCTTGGAGAACAGAATGGTTCTAGGGGTTGCACAAGAAAATGAGACACGGC TCAAGATTTCTGGATCACCCCTGGGTCTGGTAGTGACCATGGACTTGGTAACAGAGGAAC GACCCATCTTTTGCAAGAGGACACCGTCTTCAGGACGTCCCTGGAGTTTTTGGTCTGTTT TGAAGGAAACCGTGTATGCACCTTATACCTACGTTTGAGAAGAGAACGGGCAGCTGAAAA GAAAGCTTAGGAGGCCATGCAATTCCTGGACTCGCTTTAGAGGCGGACCAAGTGGTGTCT GACTGCAGTTGATTGACCCAGCCACGCATATGACACAGAGTTGCAGAGCGGGGCTCCTTT GGTCCACACTCCAAATAGGGGCCCAATGCAGCGTTTCTGTGACCCTCCCACAGTCCCAAA GCCGTTTAACTGTGGCCCCTACATCTCCATCATTTGCTTGTTCCCTTCTGATGACCGTCA TCAATGTCCTTGCTCCACTCACTCATAATCCCGTTAAAATGTAAATTAATCCCCTTGGAA GAAGGGCCAGGTTTTCTCTGTGCTCTTGAGATTTTGTGTTTTTCTTTTCTTTTTTTTTTA GTCATTGGAGGAACATTGGGCCACGGCTGTGTACATAGCACTGTGCTAGGCTCTTGGACC CCAAATGAACCCCTTTAACGTTGTGAAGAGGCAGCAGATCCTGGAGGAAAGTCATCTCTA CCTACTCCATTGAGAAGAAGAGGCTGGTCCCCAACTTGGCCTCCGATGCTCGTCCCTGCC CCCAAATAGCACGCAAGCTTGTTAATCTCAACTAGAACAAATGTTTAGATTCTGTAGATG TTAAAAAGCTTTCCTGAAAGTATTCGATTCTGCAGTGTTTATAGATGCACACTTTCCTCC GGAATTAACTGCTGACATTCCTTGGCTTTCTCATCCAGAAATTATGGAAACAGGGTCTGT CAGTGGCAGGAGGCTGGGCTGTGTCCTACATGGATGACACAGTGCTATTTCCTCGCCTCT TTACACCCATGCATGCTGCCCACCCGAAAAATGACATATAAACAGTATATAGATCAATGT CCACACATGTACACAACACACACACGCACACACAAGGCGTAACAAACACTAAAACAGTGT TGACTCTTGTCTCTGAAGACAAATCAAACATTTTTTTCCAACTAAAGAATGGATGTAATT AAACTATGTATTGAAAAAAAAAAAATAGCCTAAGTGTTTAGAGATGGTGACTATATCCAG TTTTAGTGACAGAACCAATTTCCTGAATTTTAAGCCTTCAGTGAGTGAGCTGCCAATTTT GATTTTGTGTTGCTCTTTACCCAAAGGACTTTTTAAATTTTTTTCCTTTTTGGAGGAGGG GGGCAAAAAGCAGCAATACTGTGTTTGAGAATTCTACTCTGTATCTGGCTCTCCTGTGTA CGTTAACCACTTAAATGTTATTATCCTGCTTCGGTTTTATAGTGATTGTGAGGCATTCGA TGCAAGTATACAATTATTTTCTCATTAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 281-384, - strand, RNAz p=0.874335 | |
| 1441-1556, + strand, RNAz p=0.969073 | |
| 1823-1959, - strand, RNAz p=0.997989 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 281-384, - strand, RNAz p=0.874335 | |
| 1441-1556, + strand, RNAz p=0.969073 | |
| 1823-1959, - strand, RNAz p=0.997989 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 1507-1582, + strand, RNAmicro p=0.979599 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_007203, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 4-404, gnl|bosTau2|chr8 (53497147-53496749) | |
| 4-404, gnl|canFam2|chr11 (68202321-68202752) | |
| 4-404, gnl|dasNov1|scaffold_463 (197738-198156) | |
| 4-404, gnl|echTel1|scaffold_289465 (147686-147244) | |
| 4-404, gnl|hg17|chr9 (110012141-110012581) | |
| 4-404, gnl|Hg17|chr9 (110012162-110012593) | |
| 4-404, gnl|loxAfr1|scaffold_12623 (10866-10439) | |
| 4-404, gnl|mm7|chr4 (57936253-57936635) | |
| 4-404, gnl|Mm7|chr4 (57936274-57936643) | |
| 4-404, gnl|monDom2|scaffold_19 (33629824-33630250) | |
| 4-404, gnl|oryCun1|scaffold_184516 (9394-8994) | |
| 4-404, gnl|panTro1|chr11 (94558928-94559369) | |
| 4-404, gnl|rheMac2|chr15 (26026961-26026529) | |
| 4-404, gnl|rn3|chr5 (75861830-75862290) | |
| 605-1115, gnl|bosTau2|chr8 (53496593-53496086) | |
| 605-1115, gnl|canFam2|chr11 (68202959-68203526) | |
| 605-1115, gnl|dasNov1|scaffold_463 (198395-198913) | |
| 605-1115, gnl|echTel1|scaffold_289465 (147131-146612) | |
| 605-1115, gnl|hg17|chr9 (110012825-110013400) | |
| 605-1115, gnl|Hg17|chr9 (110012834-110013378) | |
| 605-1115, gnl|loxAfr1|scaffold_12623 (10203-9672) | |
| 605-1115, gnl|mm7|chr4 (57936894-57937348) | |
| 605-1115, gnl|oryCun1|scaffold_184516 (8764-8284) | |
| 605-1115, gnl|panTro1|chr11 (94559614-94560188) | |
| 605-1115, gnl|rheMac2|chr15 (26026286-26025721) | |
| 605-1115, gnl|rn3|chr5 (75862520-75863064) | |
| 1132-2070, gnl|bosTau2|chr8 (53496090-53495163) | |
| 1132-2070, gnl|Hg17|chr9 (110013376-110014321) | |
| 1132-2070, gnl|Mm7|chr4 (57937365-57938355) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-404, gnl|bosTau2|chr8 (53497147-53496749) | |
| 4-404, gnl|canFam2|chr11 (68202321-68202752) | |
| 4-404, gnl|dasNov1|scaffold_463 (197738-198156) | |
| 4-404, gnl|echTel1|scaffold_289465 (147686-147244) | |
| 4-404, gnl|hg17|chr9 (110012141-110012581) | |
| 4-404, gnl|Hg17|chr9 (110012162-110012593) | |
| 4-404, gnl|loxAfr1|scaffold_12623 (10866-10439) | |
| 4-404, gnl|mm7|chr4 (57936253-57936635) | |
| 4-404, gnl|Mm7|chr4 (57936274-57936643) | |
| 4-404, gnl|monDom2|scaffold_19 (33629824-33630250) | |
| 4-404, gnl|oryCun1|scaffold_184516 (9394-8994) | |
| 4-404, gnl|panTro1|chr11 (94558928-94559369) | |
| 4-404, gnl|rheMac2|chr15 (26026961-26026529) | |
| 4-404, gnl|rn3|chr5 (75861830-75862290) | |
| 605-1115, gnl|bosTau2|chr8 (53496593-53496086) | |
| 605-1115, gnl|canFam2|chr11 (68202959-68203526) | |
| 605-1115, gnl|dasNov1|scaffold_463 (198395-198913) | |
| 605-1115, gnl|echTel1|scaffold_289465 (147131-146612) | |
| 605-1115, gnl|hg17|chr9 (110012825-110013400) | |
| 605-1115, gnl|Hg17|chr9 (110012834-110013378) | |
| 605-1115, gnl|loxAfr1|scaffold_12623 (10203-9672) | |
| 605-1115, gnl|mm7|chr4 (57936894-57937348) | |
| 605-1115, gnl|oryCun1|scaffold_184516 (8764-8284) | |
| 605-1115, gnl|panTro1|chr11 (94559614-94560188) | |
| 605-1115, gnl|rheMac2|chr15 (26026286-26025721) | |
| 605-1115, gnl|rn3|chr5 (75862520-75863064) | |
| 1132-2070, gnl|bosTau2|chr8 (53496090-53495163) | |
| 1132-2070, gnl|Hg17|chr9 (110013376-110014321) | |
| 1132-2070, gnl|Mm7|chr4 (57937365-57938355) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| aor (0.585823) | |
| nlu (0.383362) | |
| gul (0.355177) | |
| ssp (0.271039) | |
| hea (0.204499) | |
| rec (0.17307) | |
| nco (0.161734) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ldo (0.0970026) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.585823) | |
| nlu (0.383362) | |
| gul (0.355177) | |
| ssp (0.271039) | |
| hea (0.204499) | |
| rec (0.17307) | |
| nco (0.161734) | |
| fco (0.157208) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ldo (0.0970026) |