Ss1.1-Lng1-LNG010080A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGGGGCAGATTTCTGAGGGACTTTGGTGAACTGGAGGGAGAAGAGCAACAGAGCAAG GACACAGGCAGGGTTGCTCATTCAGAAGAATGAAACAAGAGCTCCGGGCCAAGAGGCCGA CTTGGGCATGTGTGTGCAAATATGGAAGTAAAGTGGTTTCTGGAGCAGCAACTATCACAT GCTTATTGTTGATGGGGGGGGGCAGTGCAGCGCGAGGGCTGTGTGTGTGTTGGGCTGGCG GCTGTTTTTCTAAACATGTGAAAAGCTGGAATGTATTTCCGAAAGTCTGAAATGTACTTA ACATGAGATAATACTCCTTTTATCCCTAACCCCGACTGGGGCTCTGGTTAGAACTCTGTC TGCTTTTTTTAAGAGGTGGGGAGGGTTTAGAGCAGCGCTGCCTGCAGGACTATAATGTGA GTTGAGGACATAATTTAAAATTTTCTGGTATTAAAATGGAACAAGTGAAACTCATTTTAG TAACATATTTGATTTAATCCAACATATTTAAAACAGTGTCACCTTAACATATAATCAGTA TAATCATCGAGATATTTTCTGTTATTTTCCATTGGCCCCATTGCAAGTGTTAAGTAGATG CATGTGGCTACTGGCTACCATACTGGACAGCATAGGTTCAGAGGAAGAGAAATAGAAAGA CGTACATGGTTAGCAAATGAGACCAGGGAAAGAAAACATACACTTAGAAGAAAAAAAAAG AAAATCTGAAGGTAAACAGCCTTTTAATGAAGGGCAAGTCCCTGTGATAGATACCAGTGG TTTCCATCTCCACCCAGAGTCCATGTGCCATACCCATCCCCCAAGCCCTGTGTGCGTGCA CACGTACACACACACACCCTGCCCTCCCAAAAAAACCTAGTTTACATTTTAGCTTTATGA GATGTTTGGTTTAAATCTAAGGGATACATTTCAAATAGGGAGAAATTGAAACTTAGCTAA CAGGATAAATATTTAACTTGCCTTCCTTTATTCCACAAACATTAAGTAAGGAAGCAAGTT ACCTCTCAGGGGTGAGTTCAGTTTGTACTAGATATTAAGTTTTTGTGATGTAAAGGCTGC CATGACATGTATCCTCTGGCTTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGGGGCAGATTTCTGAGGGACTTTGGTGAACTGGAGGGAGAAGAGCAACAGAGCAAG GACACAGGCAGGGTTGCTCATTCAGAAGAATGAAACAAGAGCTCCGGGCCAAGAGGCCGA CTTGGGCATGTGTGTGCAAATATGGAAGTAAAGTGGTTTCTGGAGCAGCAACTATCACAT GCTTATTGTTGATGGGGGGGGGCAGTGCAGCGCGAGGGCTGTGTGTGTGTTGGGCTGGCG GCTGTTTTTCTAAACATGTGAAAAGCTGGAATGTATTTCCGAAAGTCTGAAATGTACTTA ACATGAGATAATACTCCTTTTATCCCTAACCCCGACTGGGGCTCTGGTTAGAACTCTGTC TGCTTTTTTTAAGAGGTGGGGAGGGTTTAGAGCAGCGCTGCCTGCAGGACTATAATGTGA GTTGAGGACATAATTTAAAATTTTCTGGTATTAAAATGGAACAAGTGAAACTCATTTTAG TAACATATTTGATTTAATCCAACATATTTAAAACAGTGTCACCTTAACATATAATCAGTA TAATCATCGAGATATTTTCTGTTATTTTCCATTGGCCCCATTGCAAGTGTTAAGTAGATG CATGTGGCTACTGGCTACCATACTGGACAGCATAGGTTCAGAGGAAGAGAAATAGAAAGA CGTACATGGTTAGCAAATGAGACCAGGGAAAGAAAACATACACTTAGAAGAAAAAAAAAG AAAATCTGAAGGTAAACAGCCTTTTAATGAAGGGCAAGTCCCTGTGATAGATACCAGTGG TTTCCATCTCCACCCAGAGTCCATGTGCCATACCCATCCCCCAAGCCCTGTGTGCGTGCA CACGTACACACACACACCCTGCCCTCCCAAAAAAACCTAGTTTACATTTTAGCTTTATGA GATGTTTGGTTTAAATCTAAGGGATACATTTCAAATAGGGAGAAATTGAAACTTAGCTAA CAGGATAAATATTTAACTTGCCTTCCTTTATTCCACAAACATTAAGTAAGGAAGCAAGTT ACCTCTCAGGGGTGAGTTCAGTTTGTACTAGATATTAAGTTTTTGTGATGTAAAGGCTGC CATGACATGTATCCTCTGGCTTGC |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 38-152, + strand, RNAz p=0.999661 | |
| 573-767, + strand, RNAz p=0.996998 | |
| 650-763, - strand, RNAz p=0.655451 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 38-152, + strand, RNAz p=0.999661 | |
| 573-767, + strand, RNAz p=0.996998 | |
| 650-763, - strand, RNAz p=0.655451 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 2-567, gnl|bosTau2|chr26 (10718592-10718017) | |
| 2-567, gnl|Hg17|chr10 (97077232-97076653) | |
| 2-567, gnl|Mm7|chr19 (40197134-40196585) | |
| 573-816, gnl|bosTau2|chr26 (10717935-10717695) | |
| 573-816, gnl|dasNov1|scaffold_2309 (39244-39017) | |
| 573-816, gnl|echTel1|scaffold_318799 (84826-85106) | |
| 573-816, gnl|hg17|chr10 (97076292-97076536) | |
| 573-816, gnl|Hg17|chr10 (97076589-97076348) | |
| 573-816, gnl|loxAfr1|scaffold_12108 (26979-27226) | |
| 573-816, gnl|mm7|chr19 (40196285-40196502) | |
| 573-816, gnl|oryCun1|scaffold_213007 (58534-58905) | |
| 573-816, gnl|panTro1|chr8 (98713762-98714006) | |
| 573-816, gnl|rheMac2|chr9 (94861060-94861321) | |
| 573-816, gnl|rn3|chr1 (245526050-245526268) | |
| 849-1103, gnl|bosTau2|chr26 (10717702-10717443) | |
| 849-1103, gnl|canFam2|chr28 (11846236-11846419) | |
| 849-1103, gnl|dasNov1|scaffold_2309 (39458-39259) | |
| 849-1103, gnl|echTel1|scaffold_318799 (84604-84825) | |
| 849-1103, gnl|hg17|chr10 (97076105-97076291) | |
| 849-1103, gnl|Hg17|chr10 (97076353-97076115) | |
| 849-1103, gnl|loxAfr1|scaffold_12108 (26742-26978) | |
| 849-1103, gnl|mm7|chr19 (40196123-40196284) | |
| 849-1103, gnl|oryCun1|scaffold_213007 (58341-58533) | |
| 849-1103, gnl|panTro1|chr8 (98713575-98713761) | |
| 849-1103, gnl|rheMac2|chr9 (94860873-94861059) | |
| 849-1103, gnl|rn3|chr1 (245525881-245526049) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-567, gnl|bosTau2|chr26 (10718592-10718017) | |
| 2-567, gnl|Hg17|chr10 (97077232-97076653) | |
| 2-567, gnl|Mm7|chr19 (40197134-40196585) | |
| 573-816, gnl|bosTau2|chr26 (10717935-10717695) | |
| 573-816, gnl|dasNov1|scaffold_2309 (39244-39017) | |
| 573-816, gnl|echTel1|scaffold_318799 (84826-85106) | |
| 573-816, gnl|hg17|chr10 (97076292-97076536) | |
| 573-816, gnl|Hg17|chr10 (97076589-97076348) | |
| 573-816, gnl|loxAfr1|scaffold_12108 (26979-27226) | |
| 573-816, gnl|mm7|chr19 (40196285-40196502) | |
| 573-816, gnl|oryCun1|scaffold_213007 (58534-58905) | |
| 573-816, gnl|panTro1|chr8 (98713762-98714006) | |
| 573-816, gnl|rheMac2|chr9 (94861060-94861321) | |
| 573-816, gnl|rn3|chr1 (245526050-245526268) | |
| 849-1103, gnl|bosTau2|chr26 (10717702-10717443) | |
| 849-1103, gnl|canFam2|chr28 (11846236-11846419) | |
| 849-1103, gnl|dasNov1|scaffold_2309 (39458-39259) | |
| 849-1103, gnl|echTel1|scaffold_318799 (84604-84825) | |
| 849-1103, gnl|hg17|chr10 (97076105-97076291) | |
| 849-1103, gnl|Hg17|chr10 (97076353-97076115) | |
| 849-1103, gnl|loxAfr1|scaffold_12108 (26742-26978) | |
| 849-1103, gnl|mm7|chr19 (40196123-40196284) | |
| 849-1103, gnl|oryCun1|scaffold_213007 (58341-58533) | |
| 849-1103, gnl|panTro1|chr8 (98713575-98713761) | |
| 849-1103, gnl|rheMac2|chr9 (94860873-94861059) | |
| 849-1103, gnl|rn3|chr1 (245525881-245526049) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.1755) | |
| che (0.136314) |