Non-Coding RNA Search

Ss1.1-Lng1-LNG010080E12.5

Sequence:


               
               GTCTCCGGAGGAGCCGCCCCTCGCAGCCTCGCGCGGTCAGCTCCCCTCGTGGCCGCGCCG
CGGTCGCAGCCCAGTGACCAAGATGCTGAGCTTCTTCCGCAGAACCCTCGGTCGGAGGTC
GATGCGTAAACATGCTGAGAAGGAAAGGCTCCGAGAAGCTCAGCGTGCTGCCACGCACAT
CCCTGCGGCTGGAGATGCGAAGTCTGTCATCACGTGCCGGGTGTCCCTCCTGGATGGCAC
TGATGTCAGTGTGGACTTGCCGAAAAAAGCCAAAGGACAAGAGCTGTTTGATCAGATTAT
GTACCACTTGGATCTAATTGAAAGCGACTATTTCGGACTGAGATTTATGGATTCAGCACA
AGTAGCACATTGGTTGGATGGTACAAAGAGCATCAAAAAGCAAGTAAAAATTGGTTCACC
CTATTGTCTGCATCTACGAGTTAAGTTTTATTCCTCAGAACCAAATAATCTTCGTGAAGA
GCTAACCCGGTATTTATTTGTTCTTCAGTTAAAACAAGATATCCTTAGTGGAAAATTAGA
TTGTCCCTTTGAGACAGCTGTGCAATTGGCAGCTTATAATTTGCAAGAAAGCATATTTTC
CTGTTGATAGAGGATTGGTGACTGGAAGAAATTTCTTGAGTTCAGGTTTGTGCCCATTCA
GACTGAAGAGATGGAGCTGGCTATTTTTGAGAAATGGAAGGAATACAGAGGTCAGACACC
AGCACAAGCTGAAACCAATTATCTGAATAAAGCCAAGTGGCTAGAAATGTATGGGGTTGA
TATGCATGTGGTCAAGGCTAGAGATGGGAATGACTACAGCTTGGGACTAACCCCAACAGG
CGTCCTTGTTTTTGAAGGAGAGACCAAAATTGGCTTATTTTTTTGGCCCAAAATAACCAG
GTTGGATTTTAAGAAGAATAAATTAACCCTGGTGGTTGTAGAAGATGATGATCAGGGCAA
AGAGCAAGAGCATACGTTTGTCTTTAGACTGGATCATCCGAAAGCGTGCAAACACTTATG
GAAATGTGCTGTGGAGCACCACGCCTTCTTCCGCCTCCGAGGCCCTGTCCAGAAGAGCTC
TCATCGATCAGGATTTATTCGATTAGGATCACGGTTTAGATACAGTGGGAAAACTGAGTA
TCAGACCACAAAAACCAATAAAGCAAGAAGATCAACATCTTTTGAAAGAAGGCCCAGCAA
ACGATATTCTCGGCGAACCCTACAAATGAAAGGAGGTACAGGAAAACCTGAAGAACTCAG
TGTTCACAATAATGTTTCAGCTCAGAGTAATGGCTCCCAACAGGCTTGGGGTGTGAAATC
TTCTTTGCCTGTGATTCCTTCCATTCCCTCTGGTCCTGTGCTTGTGGAGGTGGAGAATCG
TCCAAGGAGTCCTGCAGCAGATCAGCATGACAAGAAATGGCTCTCTGCTGCCAGTGACTG
CAGTCAACGTGGTGGAAACCAGTGGAACACAAGGGCCTTGTCCCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCCGGAGGAGCCGCCCCTCGCAGCCTCGCGCGGTCAGCTCCCCTCGTGGCCGCGCCG
CGGTCGCAGCCCAGTGACCAAGATGCTGAGCTTCTTCCGCAGAACCCTCGGTCGGAGGTC
GATGCGTAAACATGCTGAGAAGGAAAGGCTCCGAGAAGCTCAGCGTGCTGCCACGCACAT
CCCTGCGGCTGGAGATGCGAAGTCTGTCATCACGTGCCGGGTGTCCCTCCTGGATGGCAC
TGATGTCAGTGTGGACTTGCCGAAAAAAGCCAAAGGACAAGAGCTGTTTGATCAGATTAT
GTACCACTTGGATCTAATTGAAAGCGACTATTTCGGACTGAGATTTATGGATTCAGCACA
AGTAGCACATTGGTTGGATGGTACAAAGAGCATCAAAAAGCAAGTAAAAATTGGTTCACC
CTATTGTCTGCATCTACGAGTTAAGTTTTATTCCTCAGAACCAAATAATCTTCGTGAAGA
GCTAACCCGGTATTTATTTGTTCTTCAGTTAAAACAAGATATCCTTAGTGGAAAATTAGA
TTGTCCCTTTGAGACAGCTGTGCAATTGGCAGCTTATAATTTGCAAGAAAGCATATTTTC
CTGTTGATAGAGGATTGGTGACTGGAAGAAATTTCTTGAGTTCAGGTTTGTGCCCATTCA
GACTGAAGAGATGGAGCTGGCTATTTTTGAGAAATGGAAGGAATACAGAGGTCAGACACC
AGCACAAGCTGAAACCAATTATCTGAATAAAGCCAAGTGGCTAGAAATGTATGGGGTTGA
TATGCATGTGGTCAAGGCTAGAGATGGGAATGACTACAGCTTGGGACTAACCCCAACAGG
CGTCCTTGTTTTTGAAGGAGAGACCAAAATTGGCTTATTTTTTTGGCCCAAAATAACCAG
GTTGGATTTTAAGAAGAATAAATTAACCCTGGTGGTTGTAGAAGATGATGATCAGGGCAA
AGAGCAAGAGCATACGTTTGTCTTTAGACTGGATCATCCGAAAGCGTGCAAACACTTATG
GAAATGTGCTGTGGAGCACCACGCCTTCTTCCGCCTCCGAGGCCCTGTCCAGAAGAGCTC
TCATCGATCAGGATTTATTCGATTAGGATCACGGTTTAGATACAGTGGGAAAACTGAGTA
TCAGACCACAAAAACCAATAAAGCAAGAAGATCAACATCTTTTGAAAGAAGGCCCAGCAA
ACGATATTCTCGGCGAACCCTACAAATGAAAGGAGGTACAGGAAAACCTGAAGAACTCAG
TGTTCACAATAATGTTTCAGCTCAGAGTAATGGCTCCCAACAGGCTTGGGGTGTGAAATC
TTCTTTGCCTGTGATTCCTTCCATTCCCTCTGGTCCTGTGCTTGTGGAGGTGGAGAATCG
TCCAAGGAGTCCTGCAGCAGATCAGCATGACAAGAAATGGCTCTCTGCTGCCAGTGACTG
CAGTCAACGTGGTGGAAACCAGTGGAACACAAGGGCCTTGTCCCCACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|50950163|ref|NP_001002952.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|50950163|ref|NP_001002952.1|

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               72-262, gnl|bosTau2|chr2 (43781625-43781436)
               

               
               72-262, gnl|Hg17|chr2 (120492880-120493070)
               

               
               72-262, gnl|Mm7|chr1 (119503186-119502996)
               


               
               952-1125, gnl|bosTau2|chr2 (43719457-43719284)
               

               
               952-1125, gnl|canFam2|chr19 (33019134-33018922)
               

               
               952-1125, gnl|danRer3|chr9 (27586598-27586389)
               

               
               952-1125, gnl|dasNov1|scaffold_7435 (39484-39654)
               

               
               952-1125, gnl|echTel1|scaffold_311020 (136202-135990)
               

               
               952-1125, gnl|fr1|chrUn (147475827-147476005)
               

               
               952-1125, gnl|galGal2|chr7 (26155896-26156090)
               

               
               952-1125, gnl|hg17|chr2 (120564136-120564348)
               

               
               952-1125, gnl|Hg17|chr2 (120564149-120564322)
               

               
               952-1125, gnl|loxAfr1|scaffold_50755 (11210-10998)
               

               
               952-1125, gnl|mm7|chr1 (119469816-119469615)
               

               
               952-1125, gnl|Mm7|chr1 (119469809-119469636)
               

               
               952-1125, gnl|monDom2|scaffold_2 (9359440-9359230)
               

               
               952-1125, gnl|oryCun1|scaffold_202262 (1105-1311)
               

               
               952-1125, gnl|panTro1|chr13 (6591708-6591919)
               

               
               952-1125, gnl|rheMac2|chr13 (126285316-126285526)
               

               
               952-1125, gnl|rn3|chr13 (32391439-32391236)
               

               
               952-1125, gnl|tetNig1|chr2 (15658623-15658449)
               

               
               952-1125, gnl|xenTro1|scaffold_89 (1992195-1992007)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-262, gnl|bosTau2|chr2 (43781625-43781436)
               

               
               72-262, gnl|Hg17|chr2 (120492880-120493070)
               

               
               72-262, gnl|Mm7|chr1 (119503186-119502996)
               


               
               952-1125, gnl|bosTau2|chr2 (43719457-43719284)
               

               
               952-1125, gnl|canFam2|chr19 (33019134-33018922)
               

               
               952-1125, gnl|danRer3|chr9 (27586598-27586389)
               

               
               952-1125, gnl|dasNov1|scaffold_7435 (39484-39654)
               

               
               952-1125, gnl|echTel1|scaffold_311020 (136202-135990)
               

               
               952-1125, gnl|fr1|chrUn (147475827-147476005)
               

               
               952-1125, gnl|galGal2|chr7 (26155896-26156090)
               

               
               952-1125, gnl|hg17|chr2 (120564136-120564348)
               

               
               952-1125, gnl|Hg17|chr2 (120564149-120564322)
               

               
               952-1125, gnl|loxAfr1|scaffold_50755 (11210-10998)
               

               
               952-1125, gnl|mm7|chr1 (119469816-119469615)
               

               
               952-1125, gnl|Mm7|chr1 (119469809-119469636)
               

               
               952-1125, gnl|monDom2|scaffold_2 (9359440-9359230)
               

               
               952-1125, gnl|oryCun1|scaffold_202262 (1105-1311)
               

               
               952-1125, gnl|panTro1|chr13 (6591708-6591919)
               

               
               952-1125, gnl|rheMac2|chr13 (126285316-126285526)
               

               
               952-1125, gnl|rn3|chr13 (32391439-32391236)
               

               
               952-1125, gnl|tetNig1|chr2 (15658623-15658449)
               

               
               952-1125, gnl|xenTro1|scaffold_89 (1992195-1992007)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

	72-262, gnl\|bosTau2\|chr2 (43781625-43781436)
	72-262, gnl\|Hg17\|chr2 (120492880-120493070)
	72-262, gnl\|Mm7\|chr1 (119503186-119502996)

	952-1125, gnl\|bosTau2\|chr2 (43719457-43719284)
	952-1125, gnl\|canFam2\|chr19 (33019134-33018922)
	952-1125, gnl\|danRer3\|chr9 (27586598-27586389)
	952-1125, gnl\|dasNov1\|scaffold_7435 (39484-39654)
	952-1125, gnl\|echTel1\|scaffold_311020 (136202-135990)
	952-1125, gnl\|fr1\|chrUn (147475827-147476005)
	952-1125, gnl\|galGal2\|chr7 (26155896-26156090)
	952-1125, gnl\|hg17\|chr2 (120564136-120564348)
	952-1125, gnl\|Hg17\|chr2 (120564149-120564322)
	952-1125, gnl\|loxAfr1\|scaffold_50755 (11210-10998)
	952-1125, gnl\|mm7\|chr1 (119469816-119469615)
	952-1125, gnl\|Mm7\|chr1 (119469809-119469636)
	952-1125, gnl\|monDom2\|scaffold_2 (9359440-9359230)
	952-1125, gnl\|oryCun1\|scaffold_202262 (1105-1311)
	952-1125, gnl\|panTro1\|chr13 (6591708-6591919)
	952-1125, gnl\|rheMac2\|chr13 (126285316-126285526)
	952-1125, gnl\|rn3\|chr13 (32391439-32391236)
	952-1125, gnl\|tetNig1\|chr2 (15658623-15658449)
	952-1125, gnl\|xenTro1\|scaffold_89 (1992195-1992007)

	cty (0.20816)
	cst (0.140036)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)