Ss1.1-Lng1-LNG010081D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAACTCGGCGATACCCTCCTGCCGCTTTGATTTCGGGCACCTCCACCAGATAATTGGGA AGGGTTTCCAGAAGGTGGGAAATGTCACCTGATTCACACTGAACTTTTAAAAGCTCCCCA CCCCCAAGGAGCCGCGCACACCCTCGCTCGAGGCCGCCCTCCCACTGCCCCACACACTGG GAGACCGCCCACCGCAAACCGCGGAGACCCCCGTCTAGATTTAAAGCGCGGCTGCGCCCG GCTTCTGACGTCCATTGAATCGCGCGGGCGGCCGGCGGCGAGCGCGGGGTTGCGCCGGGA TCGCTGCGCCCTCCGCCGCTCGCCTCTGCGACGCGCGCCGCTCGCCGGAACCACTCGCCG CCGCGCCTGCTCCCCGCACCGTCGCGCTCCTCGTCCCGCGCCTGACCCCAGAATGGTCCG TCCCAAGCACCAGCCCGGCGGGCTATGCCTCCTGCTGCTGCTGCTCTGCCAGTTCATGGA GGACCGCAGCGCCCAGGCTGGGAATTGCTGGCTCCGCCAAGCAAAAAACGGCCGCTGCCA GGTCCTGTATAAAACCGAACTGAGCAAGGAGGAGTGCTGCAGCACCGGCCGCCTGAGCAC CTCCTGGACCGAGGAGGACGTAAATGACAACACACTTTTCAAGTGGATGATTTTCAATGG AGGTGCCCCCAACTGCATCCCATGTAAAGAAACGTGCGAGAACGTGGACTGTGGGCCCGG GAAAAAATGCCGAATGAACAAGAAGAACAAACCCCGCTGCGTCTGCGCCCCGGATTGTTC TAACATCACCTGGAAAGGCCCAGTCTGTGGGCTGGATGGGAAAACCTACCGCAACGAATG TGCTCTCCTCAAGGCCAGATGTAAAGAACAGCCGGAACTGGAAGTCCAGTACCAAGGCAA ATGTAAAAAGACCTGTCGGGATGTTTTCTGTCCAGGCAGCTCCACATGTGTGGTGGACCA GACTAATAATGCCTACTGTGTGACATGTAACCGCATTTGCCCAGAGCCCACCTCCTCAGA ACAGTATCTCTGTGGGAATGATGGAGTGACCTACTCCAGTGCCTGTCACCTGAGAAAGGC TACCTGCCTACTGGGCAGATCTATTGGATTGGCCTATGAGGGAAAGTGTATCAAAGCAAA GTCCTGTGAAGACATCCAGTGCACTGGTGGAAAAAAGTGCTTATGGGATTTCAAGGTTGG CAGAGGCCGTTGTTCCCTCTGCGATGAGCTGTGCCCTGAGAGTAAGTCTGAGGAGCCTGT CTGTGCCAGTGACAATGCCACCTACGCCAGTGAGTGTGCCATGAAGGAAGCGGCCTGTTC CTCAGGTGTGCTGCTGGAAGTAAAGCACTCTGGATCTTGCAACTCCATTTCAGAAGACAC CGAGGAGGAGGAGGAAGATGAAGACCAGGACTACAGCTTTCCTATATCTTCTATTCTAGA GTGGTAAACCCTCCACCAATTTTCAGTGTTGACATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAACTCGGCGATACCCTCCTGCCGCTTTGATTTCGGGCACCTCCACCAGATAATTGGGA AGGGTTTCCAGAAGGTGGGAAATGTCACCTGATTCACACTGAACTTTTAAAAGCTCCCCA CCCCCAAGGAGCCGCGCACACCCTCGCTCGAGGCCGCCCTCCCACTGCCCCACACACTGG GAGACCGCCCACCGCAAACCGCGGAGACCCCCGTCTAGATTTAAAGCGCGGCTGCGCCCG GCTTCTGACGTCCATTGAATCGCGCGGGCGGCCGGCGGCGAGCGCGGGGTTGCGCCGGGA TCGCTGCGCCCTCCGCCGCTCGCCTCTGCGACGCGCGCCGCTCGCCGGAACCACTCGCCG CCGCGCCTGCTCCCCGCACCGTCGCGCTCCTCGTCCCGCGCCTGACCCCAGAATGGTCCG TCCCAAGCACCAGCCCGGCGGGCTATGCCTCCTGCTGCTGCTGCTCTGCCAGTTCATGGA GGACCGCAGCGCCCAGGCTGGGAATTGCTGGCTCCGCCAAGCAAAAAACGGCCGCTGCCA GGTCCTGTATAAAACCGAACTGAGCAAGGAGGAGTGCTGCAGCACCGGCCGCCTGAGCAC CTCCTGGACCGAGGAGGACGTAAATGACAACACACTTTTCAAGTGGATGATTTTCAATGG AGGTGCCCCCAACTGCATCCCATGTAAAGAAACGTGCGAGAACGTGGACTGTGGGCCCGG GAAAAAATGCCGAATGAACAAGAAGAACAAACCCCGCTGCGTCTGCGCCCCGGATTGTTC TAACATCACCTGGAAAGGCCCAGTCTGTGGGCTGGATGGGAAAACCTACCGCAACGAATG TGCTCTCCTCAAGGCCAGATGTAAAGAACAGCCGGAACTGGAAGTCCAGTACCAAGGCAA ATGTAAAAAGACCTGTCGGGATGTTTTCTGTCCAGGCAGCTCCACATGTGTGGTGGACCA GACTAATAATGCCTACTGTGTGACATGTAACCGCATTTGCCCAGAGCCCACCTCCTCAGA ACAGTATCTCTGTGGGAATGATGGAGTGACCTACTCCAGTGCCTGTCACCTGAGAAAGGC TACCTGCCTACTGGGCAGATCTATTGGATTGGCCTATGAGGGAAAGTGTATCAAAGCAAA GTCCTGTGAAGACATCCAGTGCACTGGTGGAAAAAAGTGCTTATGGGATTTCAAGGTTGG CAGAGGCCGTTGTTCCCTCTGCGATGAGCTGTGCCCTGAGAGTAAGTCTGAGGAGCCTGT CTGTGCCAGTGACAATGCCACCTACGCCAGTGAGTGTGCCATGAAGGAAGCGGCCTGTTC CTCAGGTGTGCTGCTGGAAGTAAAGCACTCTGGATCTTGCAACTCCATTTCAGAAGACAC CGAGGAGGAGGAGGAAGATGAAGACCAGGACTACAGCTTTCCTATATCTTCTATTCTAGA GTGGTAAACCCTCCACCAATTTTCAGTGTTGACATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 988-1107, - strand, RNAz p=0.931752 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 988-1107, - strand, RNAz p=0.931752 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 234-497, gnl|bosTau2|chr20 (13857667-13857951) | |
| 234-497, gnl|Hg17|chr5 (52812200-52812463) | |
| 234-497, gnl|Mm7|chr13 (111631181-111630940) | |
| 688-908, gnl|bosTau2|chr20 (13860545-13860765) | |
| 688-908, gnl|Hg17|chr5 (52815089-52815309) | |
| 688-908, gnl|Mm7|chr13 (111628342-111628122) | |
| 909-1133, gnl|bosTau2|chr20 (13861087-13861311) | |
| 909-1133, gnl|canFam2|chr4 (64984823-64984620) | |
| 909-1133, gnl|danRer3|chr5 (50653907-50654110) | |
| 909-1133, gnl|dasNov1|scaffold_26363 (3952-4155) | |
| 909-1133, gnl|echTel1|scaffold_304385 (823-1025) | |
| 909-1133, gnl|fr1|chrUn (1265442-1265239) | |
| 909-1133, gnl|galGal2|chrZ (8935651-8935854) | |
| 909-1133, gnl|hg17|chr5 (52815652-52815855) | |
| 909-1133, gnl|Hg17|chr5 (52815656-52815880) | |
| 909-1133, gnl|loxAfr1|scaffold_55389 (1196-1402) | |
| 909-1133, gnl|mm7|chr13 (111627789-111627586) | |
| 909-1133, gnl|Mm7|chr13 (111627783-111627559) | |
| 909-1133, gnl|monDom2|scaffold_27 (15759675-15759878) | |
| 909-1133, gnl|oryCun1|scaffold_189546 (9160-8957) | |
| 909-1133, gnl|panTro1|chr4 (63462579-63462376) | |
| 909-1133, gnl|rheMac2|chr6 (51145392-51145595) | |
| 909-1133, gnl|rn3|chr2 (46473037-46472834) | |
| 909-1133, gnl|tetNig1|chr12 (5834144-5833941) | |
| 909-1133, gnl|xenTro1|scaffold_853 (475272-475069) | |
| 1134-1364, gnl|bosTau2|chr20 (13861991-13862221) | |
| 1134-1364, gnl|canFam2|chr4 (64983983-64983692) | |
| 1134-1364, gnl|danRer3|chr5 (50654324-50654600) | |
| 1134-1364, gnl|dasNov1|scaffold_26363 (4801-5084) | |
| 1134-1364, gnl|fr1|chrUn (1264753-1264482) | |
| 1134-1364, gnl|galGal2|chrZ (8936965-8937240) | |
| 1134-1364, gnl|hg17|chr5 (52816529-52816821) | |
| 1134-1364, gnl|Hg17|chr5 (52816584-52816814) | |
| 1134-1364, gnl|loxAfr1|scaffold_85632 (12381-12090) | |
| 1134-1364, gnl|mm7|chr13 (111627008-111626713) | |
| 1134-1364, gnl|Mm7|chr13 (111626948-111626718) | |
| 1134-1364, gnl|monDom2|scaffold_27 (15760759-15761051) | |
| 1134-1364, gnl|oryCun1|scaffold_189546 (8131-7851) | |
| 1134-1364, gnl|panTro1|chr4 (63461702-63461410) | |
| 1134-1364, gnl|rheMac2|chr6 (51146244-51146536) | |
| 1134-1364, gnl|rn3|chr2 (46471701-46471410) | |
| 1134-1364, gnl|tetNig1|chr12 (5833427-5833185) | |
| 1134-1364, gnl|xenTro1|scaffold_853 (473605-473302) | |
| 1365-1476, gnl|bosTau2|chr20 (13862977-13863088) | |
| 1365-1476, gnl|Hg17|chr5 (52817538-52817649) | |
| 1365-1476, gnl|Mm7|chr13 (111625943-111625832) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 234-497, gnl|bosTau2|chr20 (13857667-13857951) | |
| 234-497, gnl|Hg17|chr5 (52812200-52812463) | |
| 234-497, gnl|Mm7|chr13 (111631181-111630940) | |
| 688-908, gnl|bosTau2|chr20 (13860545-13860765) | |
| 688-908, gnl|Hg17|chr5 (52815089-52815309) | |
| 688-908, gnl|Mm7|chr13 (111628342-111628122) | |
| 909-1133, gnl|bosTau2|chr20 (13861087-13861311) | |
| 909-1133, gnl|canFam2|chr4 (64984823-64984620) | |
| 909-1133, gnl|danRer3|chr5 (50653907-50654110) | |
| 909-1133, gnl|dasNov1|scaffold_26363 (3952-4155) | |
| 909-1133, gnl|echTel1|scaffold_304385 (823-1025) | |
| 909-1133, gnl|fr1|chrUn (1265442-1265239) | |
| 909-1133, gnl|galGal2|chrZ (8935651-8935854) | |
| 909-1133, gnl|hg17|chr5 (52815652-52815855) | |
| 909-1133, gnl|Hg17|chr5 (52815656-52815880) | |
| 909-1133, gnl|loxAfr1|scaffold_55389 (1196-1402) | |
| 909-1133, gnl|mm7|chr13 (111627789-111627586) | |
| 909-1133, gnl|Mm7|chr13 (111627783-111627559) | |
| 909-1133, gnl|monDom2|scaffold_27 (15759675-15759878) | |
| 909-1133, gnl|oryCun1|scaffold_189546 (9160-8957) | |
| 909-1133, gnl|panTro1|chr4 (63462579-63462376) | |
| 909-1133, gnl|rheMac2|chr6 (51145392-51145595) | |
| 909-1133, gnl|rn3|chr2 (46473037-46472834) | |
| 909-1133, gnl|tetNig1|chr12 (5834144-5833941) | |
| 909-1133, gnl|xenTro1|scaffold_853 (475272-475069) | |
| 1134-1364, gnl|bosTau2|chr20 (13861991-13862221) | |
| 1134-1364, gnl|canFam2|chr4 (64983983-64983692) | |
| 1134-1364, gnl|danRer3|chr5 (50654324-50654600) | |
| 1134-1364, gnl|dasNov1|scaffold_26363 (4801-5084) | |
| 1134-1364, gnl|fr1|chrUn (1264753-1264482) | |
| 1134-1364, gnl|galGal2|chrZ (8936965-8937240) | |
| 1134-1364, gnl|hg17|chr5 (52816529-52816821) | |
| 1134-1364, gnl|Hg17|chr5 (52816584-52816814) | |
| 1134-1364, gnl|loxAfr1|scaffold_85632 (12381-12090) | |
| 1134-1364, gnl|mm7|chr13 (111627008-111626713) | |
| 1134-1364, gnl|Mm7|chr13 (111626948-111626718) | |
| 1134-1364, gnl|monDom2|scaffold_27 (15760759-15761051) | |
| 1134-1364, gnl|oryCun1|scaffold_189546 (8131-7851) | |
| 1134-1364, gnl|panTro1|chr4 (63461702-63461410) | |
| 1134-1364, gnl|rheMac2|chr6 (51146244-51146536) | |
| 1134-1364, gnl|rn3|chr2 (46471701-46471410) | |
| 1134-1364, gnl|tetNig1|chr12 (5833427-5833185) | |
| 1134-1364, gnl|xenTro1|scaffold_853 (473605-473302) | |
| 1365-1476, gnl|bosTau2|chr20 (13862977-13863088) | |
| 1365-1476, gnl|Hg17|chr5 (52817538-52817649) | |
| 1365-1476, gnl|Mm7|chr13 (111625943-111625832) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| ese (0.126502) | |
| eep (0.122564) |