Non-Coding RNA Search

Ss1.1-Lng1-LNG010081H01.5

Sequence:


               
               AATGATGAACAACAACGACCTCGTGAGGAAGAGAAGGCTGGCAGACTTGACCGGGCCCAT
CATTCCCAAGTGCCGGAGTGGCATCTAGTGTGTGCGGGTGCTGACCACGCCTTTGAACTG
GACGTGTCCTACTGATAAGCTGTGCTCTGCAGTGGAAACCGGAAGGCAAAGTGCCGGCAC
AGACCCTGCTGTGGTTCAGTTCTTTATGCACTAAGGTTTTAGGTTAGCTAGTGGTTGTAG
TTGAAACTTTTATAAACTATGGTTAATGTGAAGTTTTTCTTTAGTCACAGAAGTTCAGTC
TGGTTATTATTTAAAAACTAAGAAGCCCCTGAACCAGCAGATCTTACTGAAGACGATATT
ATAGCAGCAGTGACTTACCCCCTGGAGCCCCGTTTGGGTGGCCTTGCTGTGTGGTGTTTC
AGGTGCATTTAAAATACGAGACATGAAAAAACAGCACCCTCTTCCATGTGGTTTAAAAGC
GTTGTAAGATACTTTATTACAAATTTGATCTTAGCTCTCTAGAAAACGAGACAGATCAAC
ATTCTTTATTAACACTCCTTTAAATTTTAAGAACCTCAAGATTAAGGTTGCCAAACTGAT
TTTTGGATCAAGAACACAATTTTTTTTCCCCCCTCAAGAAAGAAAGACTGAAGCGACAAA
GCTCTGCCAGGAATCAAAGAACATAAGATTCCTTATACTGGATACAAGGAAATAATACAA
AAAGCCAATGGTGGAATTTCAAATTTTTAAAACTGTCCTTTTTTTATTCTTTTTAAAAAA
CCTATTCCAGACAACAAACATTTCCCTATGTTCTTTATGAACACCTGGGATTTACTTACA
ATTTGATACCGGAGTCAGAAAATTTCTTCCTTATATATAATGCCAATCTTACAGTGGATG
TGAAACCTATGGCCAAACACCTTTCTCTATCGCACAGCGGACCAATGCCTCATGTGAGAT
AAGACACTAGAGAGACAAATTTCTAGTCTATCATGGCTTAAGCTTACAGAATTCAACTAC
CTGTCATGTCACTCATTTGTCAAGTCACCGCTGATCTCATGCCTGTCAATTAAGCCTCTC
AAGACCAATGGTGAAGACAATCCAGATGTTTAGGAATCAGGAAACCTGGCCAAACCATCC
CTAGATGATTATTCTTAAAATGTAATTTTGGCATTTCTGCCGGATCCCTTTTAACATCAT
GTGCATCTCTTGAGATCCAGCAAAAATGTTAAGCTCAATGCCCTTGTGCCTTTTAATATA
CCACAGTGCCAGTTAAACTAGTATTTCTGTTGCTTGGGGAGTTATTTTCATGAGTGATTC
AGCAAATCTTATGATAAAGGACAGGCCAAAGAGCTGATGAGCACAGACTAAGCCGCAGAG
CACTGCGCAGAGAGGCTTTTGATGAAAAAGGGCAAGTCTTGCACACTGAACTGTAATGAC
GTGGACAGTACAGGGTAACCAGAGGTGGAGCCAGGGCCTCACCACTATGGAGGAGTATCT
ACTGAGGCTGCAGATGGGCCCGGGAGTGGCTCCATGCTGCAGAGACGGCCAGCCCCACTC
GGCTTCTCCTTGAAACACAATTGCAGCTGTATTCTGCATCACTGGAAACTGCAATATAAT
ATTAAATCTGTTGGTCTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGGCTAGGG
ACACATGATGGCCAGGAGACTGGGAAACCACTGTGGTTCCCCCCCCCCAGTTCACACAGA
ACGTCTTCTAATCCTGAGGTGTTCACCTAAAAACTACTGCCTACATGTCAGTGTCATCGA
GCTAAAGTGAATCTCTCAAAGAGCACACTTAGGAGCTAAGGATGTGGGTGCTGGGGGAAG
CAGACTAGCACAGGGAAATCTTTCACACAAACTAAATCAATAAAAAATGAAGGTGGACCC
ACATCTTTAAGACCATCTCCACTGTCAGATGAGCTGTTGGGCCAGACCAGGGATGGCAAA
ATTTTTTCTGTAAGGGCCAGATCATACAGGCATACCTTGTTTTACTGCACTCTGCAGATA
CTTTTTTTTTGTTTTGTTTTATAAATTGAAGATTTGTGGTAACTCTGCATTGTCAGAAAA
TAGCATTTTTTAGTAATTTAAAAATTTTTAGCAATTAAAAAATTTTAAAAATTTTAAATT
AGGTTATATGCATTTTTTAGACATAAAGTTATTGCACACTTAAGAGACTACAGCATAATG
TAAGTGTAATTTTTATATGTACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGATGAACAACAACGACCTCGTGAGGAAGAGAAGGCTGGCAGACTTGACCGGGCCCAT
CATTCCCAAGTGCCGGAGTGGCATCTAGTGTGTGCGGGTGCTGACCACGCCTTTGAACTG
GACGTGTCCTACTGATAAGCTGTGCTCTGCAGTGGAAACCGGAAGGCAAAGTGCCGGCAC
AGACCCTGCTGTGGTTCAGTTCTTTATGCACTAAGGTTTTAGGTTAGCTAGTGGTTGTAG
TTGAAACTTTTATAAACTATGGTTAATGTGAAGTTTTTCTTTAGTCACAGAAGTTCAGTC
TGGTTATTATTTAAAAACTAAGAAGCCCCTGAACCAGCAGATCTTACTGAAGACGATATT
ATAGCAGCAGTGACTTACCCCCTGGAGCCCCGTTTGGGTGGCCTTGCTGTGTGGTGTTTC
AGGTGCATTTAAAATACGAGACATGAAAAAACAGCACCCTCTTCCATGTGGTTTAAAAGC
GTTGTAAGATACTTTATTACAAATTTGATCTTAGCTCTCTAGAAAACGAGACAGATCAAC
ATTCTTTATTAACACTCCTTTAAATTTTAAGAACCTCAAGATTAAGGTTGCCAAACTGAT
TTTTGGATCAAGAACACAATTTTTTTTCCCCCCTCAAGAAAGAAAGACTGAAGCGACAAA
GCTCTGCCAGGAATCAAAGAACATAAGATTCCTTATACTGGATACAAGGAAATAATACAA
AAAGCCAATGGTGGAATTTCAAATTTTTAAAACTGTCCTTTTTTTATTCTTTTTAAAAAA
CCTATTCCAGACAACAAACATTTCCCTATGTTCTTTATGAACACCTGGGATTTACTTACA
ATTTGATACCGGAGTCAGAAAATTTCTTCCTTATATATAATGCCAATCTTACAGTGGATG
TGAAACCTATGGCCAAACACCTTTCTCTATCGCACAGCGGACCAATGCCTCATGTGAGAT
AAGACACTAGAGAGACAAATTTCTAGTCTATCATGGCTTAAGCTTACAGAATTCAACTAC
CTGTCATGTCACTCATTTGTCAAGTCACCGCTGATCTCATGCCTGTCAATTAAGCCTCTC
AAGACCAATGGTGAAGACAATCCAGATGTTTAGGAATCAGGAAACCTGGCCAAACCATCC
CTAGATGATTATTCTTAAAATGTAATTTTGGCATTTCTGCCGGATCCCTTTTAACATCAT
GTGCATCTCTTGAGATCCAGCAAAAATGTTAAGCTCAATGCCCTTGTGCCTTTTAATATA
CCACAGTGCCAGTTAAACTAGTATTTCTGTTGCTTGGGGAGTTATTTTCATGAGTGATTC
AGCAAATCTTATGATAAAGGACAGGCCAAAGAGCTGATGAGCACAGACTAAGCCGCAGAG
CACTGCGCAGAGAGGCTTTTGATGAAAAAGGGCAAGTCTTGCACACTGAACTGTAATGAC
GTGGACAGTACAGGGTAACCAGAGGTGGAGCCAGGGCCTCACCACTATGGAGGAGTATCT
ACTGAGGCTGCAGATGGGCCCGGGAGTGGCTCCATGCTGCAGAGACGGCCAGCCCCACTC
GGCTTCTCCTTGAAACACAATTGCAGCTGTATTCTGCATCACTGGAAACTGCAATATAAT
ATTAAATCTGTTGGTCTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGGCTAGGG
ACACATGATGGCCAGGAGACTGGGAAACCACTGTGGTTCCCCCCCCCCAGTTCACACAGA
ACGTCTTCTAATCCTGAGGTGTTCACCTAAAAACTACTGCCTACATGTCAGTGTCATCGA
GCTAAAGTGAATCTCTCAAAGAGCACACTTAGGAGCTAAGGATGTGGGTGCTGGGGGAAG
CAGACTAGCACAGGGAAATCTTTCACACAAACTAAATCAATAAAAAATGAAGGTGGACCC
ACATCTTTAAGACCATCTCCACTGTCAGATGAGCTGTTGGGCCAGACCAGGGATGGCAAA
ATTTTTTCTGTAAGGGCCAGATCATACAGGCATACCTTGTTTTACTGCACTCTGCAGATA
CTTTTTTTTTGTTTTGTTTTATAAATTGAAGATTTGTGGTAACTCTGCATTGTCAGAAAA
TAGCATTTTTTAGTAATTTAAAAATTTTTAGCAATTAAAAAATTTTAAAAATTTTAAATT
AGGTTATATGCATTTTTTAGACATAAAGTTATTGCACACTTAAGAGACTACAGCATAATG
TAAGTGTAATTTTTATATGTACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1456-1575, - strand, RNAz p=0.715664

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1456-1575, - strand, RNAz p=0.715664

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC035604, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC035604, -

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               23-1640, gnl|bosTau2|chr8 (32839127-32840721)
               

               
               23-1640, gnl|Hg17|chr9 (97441470-97443089)
               

               
               23-1640, gnl|Mm7|chr4 (46128127-46129848)
               


               
               1686-2127, gnl|bosTau2|chr8 (32840761-32841201)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-1640, gnl|bosTau2|chr8 (32839127-32840721)
               

               
               23-1640, gnl|Hg17|chr9 (97441470-97443089)
               

               
               23-1640, gnl|Mm7|chr4 (46128127-46129848)
               


               
               1686-2127, gnl|bosTau2|chr8 (32840761-32841201)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               tbr (0.616713)
               

               
               mas (0.42061)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               liv (0.292569)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.616713)
               

               
               mas (0.42061)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               liv (0.292569)
               

               
               ste (0.270416)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	23-1640, gnl\|bosTau2\|chr8 (32839127-32840721)
	23-1640, gnl\|Hg17\|chr9 (97441470-97443089)
	23-1640, gnl\|Mm7\|chr4 (46128127-46129848)

	1686-2127, gnl\|bosTau2\|chr8 (32840761-32841201)

	tbr (0.616713)
	mas (0.42061)
	vin (0.332557)
	sme (0.305437)
	nbm (0.297974)
	liv (0.292569)
	ste (0.270416)
	sug (0.254582)
	cbe (0.239234)
	jca (0.22792)
	nms (0.213858)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	mgm (0.180343)
	sto (0.179824)
	fty (0.17584)
	sin (0.174948)
	eye (0.170503)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	nca (0.136874)
	che (0.136314)
	ret (0.128733)
	ese (0.126502)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)