Non-Coding RNA Search

Ss1.1-Lng1-LNG010081H10.5

Sequence:


               
               GAGGCCAGTGTCGAAACTGAGTGGCCCCATGATGGAAAGGGGAAGTCCAGGGGTATAAGA
GGCCCCTGACTGAAGGCGGAGGCTAACATGGGGTTTGGAACGACTGTAGCTGTCGGCCTG
ACTATCTTTGTGCTGTCTGTTGTCACCATCATCATCTGCTTCACCTGCTCCTGCTGCTAT
TTGTACAAGATGTGCCGCCGACCACGTCCAGTCGTGACTACCACCACGGCCACTACAGTG
GTACACGCCCCTTACCCGCAACCTCCAAGTGTGCCACCCAGCTATCCAGGACCGACGTAC
CAGGGCTACCATTCCATGCCCTCCCAGCCAGCGATGCCAGCTGCACCCTACCCGACGCAG
TACCCACCACCCTACCCAGCCCAGCCCATGGGTCCCCCCGCCTACCACGAAACAATGGCT
GGAGGTGCGGCCATGCCCTACCCTGCCAGTCAGCCTCCTTACAATCCGGCCTACGTGGAT
CCCCCGAAGGCAGCTCCCTGAGCACACCTTTGCATCTCTGGCTGCCACTTGATCTGTCAT
GTGTGTATGTGAATGGGTATGCAGGCACGGTCTTGTTTCTTCCCGTGCGTGGTGTGTGTG
TCCTATTTGTACACGAAGTTTCTTGTGAGGGGTGGGGGACAATCCTTCCCAGAGTTAATT
GGGACCATAGCTTGTTCCCTTCCTGACTTGAAATTATGCTTCTGAAATCTCAAGCAAAAC
TGAAAGAATGGTTCTCTTCCAGACAGCCCAGGGAGGCCAAATGGGGGTTGTCACACTAGG
ATAGCACAGCTTTTTGTGGGCACAGTGCACCCGTGTTCCAGTTTCTGAGGAATGCTGGCC
ACTGCTCAAGGCCATGGCTTGTCCCCAGACTTGCCTTCAAAGAACCAGAGCCGTGATGCA
AAGTGGGTGAGGTGAGGCTTGGGAGCCAGCCAGAGGTGGGTTTCAACCCTTGTGGCAGAC
AGCCCACAGCTCCCACAGCCTGTGCCTTGCCCATTGGAGGGAGGGCAGCCTCCTGATATC
AAAACATCTCAGGCAGAGCCGCACCCTCCCTCGAGCACTCTCTGCCTGGACTCTTGCATC
CTTCCTGGGACCACCTGGAAAGCCACATTTACCCATGGTTCTGGCTGCCCTGACTCCCGC
CACAGATGCACAGGCTGGCCTCTGTCTACCTACACACTCAGGTGTCATCCCTGCAGTGTT
TTTTGAGCTAAACATTTTACCTGCTTTGTTTCAAAGTGTGTGTTATAATTGCTGTGAGGC
TGAAACCCCTGGGTCCTAGAGAGAAATTGCCCCAGAGGAGAGAGACTGTCTAGCGTGATA
GCCCCTGCTTCCCCAGCACCAGCCTCACAGACTGTCCAGCTCCTGTACCCCAGTCCACAG
TCTGTCCTGGCAGTGGGGACACCTGGGCCAAGGGGTCATCTGGACCAAAGGTGGAAGGGG
CCCTGGGTGGCTGCTTTGGCCCAGACACAATACCTCGGTGTTCCCTCTCCTCTATAATGT
CTTACCACATTGTAGCTTTGTACCTGTTCGTGTGTTTTTGAGAATCTAGAGTCTGCACCC
TTGTTTATAATAAATGCAAGTATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCAGTGTCGAAACTGAGTGGCCCCATGATGGAAAGGGGAAGTCCAGGGGTATAAGA
GGCCCCTGACTGAAGGCGGAGGCTAACATGGGGTTTGGAACGACTGTAGCTGTCGGCCTG
ACTATCTTTGTGCTGTCTGTTGTCACCATCATCATCTGCTTCACCTGCTCCTGCTGCTAT
TTGTACAAGATGTGCCGCCGACCACGTCCAGTCGTGACTACCACCACGGCCACTACAGTG
GTACACGCCCCTTACCCGCAACCTCCAAGTGTGCCACCCAGCTATCCAGGACCGACGTAC
CAGGGCTACCATTCCATGCCCTCCCAGCCAGCGATGCCAGCTGCACCCTACCCGACGCAG
TACCCACCACCCTACCCAGCCCAGCCCATGGGTCCCCCCGCCTACCACGAAACAATGGCT
GGAGGTGCGGCCATGCCCTACCCTGCCAGTCAGCCTCCTTACAATCCGGCCTACGTGGAT
CCCCCGAAGGCAGCTCCCTGAGCACACCTTTGCATCTCTGGCTGCCACTTGATCTGTCAT
GTGTGTATGTGAATGGGTATGCAGGCACGGTCTTGTTTCTTCCCGTGCGTGGTGTGTGTG
TCCTATTTGTACACGAAGTTTCTTGTGAGGGGTGGGGGACAATCCTTCCCAGAGTTAATT
GGGACCATAGCTTGTTCCCTTCCTGACTTGAAATTATGCTTCTGAAATCTCAAGCAAAAC
TGAAAGAATGGTTCTCTTCCAGACAGCCCAGGGAGGCCAAATGGGGGTTGTCACACTAGG
ATAGCACAGCTTTTTGTGGGCACAGTGCACCCGTGTTCCAGTTTCTGAGGAATGCTGGCC
ACTGCTCAAGGCCATGGCTTGTCCCCAGACTTGCCTTCAAAGAACCAGAGCCGTGATGCA
AAGTGGGTGAGGTGAGGCTTGGGAGCCAGCCAGAGGTGGGTTTCAACCCTTGTGGCAGAC
AGCCCACAGCTCCCACAGCCTGTGCCTTGCCCATTGGAGGGAGGGCAGCCTCCTGATATC
AAAACATCTCAGGCAGAGCCGCACCCTCCCTCGAGCACTCTCTGCCTGGACTCTTGCATC
CTTCCTGGGACCACCTGGAAAGCCACATTTACCCATGGTTCTGGCTGCCCTGACTCCCGC
CACAGATGCACAGGCTGGCCTCTGTCTACCTACACACTCAGGTGTCATCCCTGCAGTGTT
TTTTGAGCTAAACATTTTACCTGCTTTGTTTCAAAGTGTGTGTTATAATTGCTGTGAGGC
TGAAACCCCTGGGTCCTAGAGAGAAATTGCCCCAGAGGAGAGAGACTGTCTAGCGTGATA
GCCCCTGCTTCCCCAGCACCAGCCTCACAGACTGTCCAGCTCCTGTACCCCAGTCCACAG
TCTGTCCTGGCAGTGGGGACACCTGGGCCAAGGGGTCATCTGGACCAAAGGTGGAAGGGG
CCCTGGGTGGCTGCTTTGGCCCAGACACAATACCTCGGTGTTCCCTCTCCTCTATAATGT
CTTACCACATTGTAGCTTTGTACCTGTTCGTGTGTTTTTGAGAATCTAGAGTCTGCACCC
TTGTTTATAATAAATGCAAGTATTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5RDV6_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5RDV6_PONPY

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1123-1221, - strand, RNAz p=0.720084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1123-1221, - strand, RNAz p=0.720084

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               421-899, gnl|bosTau2|chr22 (39047400-39046912)
               

               
               421-899, gnl|Hg17|chr3 (48485590-48484994)
               

               
               421-899, gnl|Mm7|chr9 (108766846-108767374)
               


               
               996-1588, gnl|bosTau2|chr22 (39046910-39046319)
               

               
               996-1588, gnl|Hg17|chr3 (48484992-48484279)
               

               
               996-1588, gnl|Mm7|chr9 (108767376-108767982)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               421-899, gnl|bosTau2|chr22 (39047400-39046912)
               

               
               421-899, gnl|Hg17|chr3 (48485590-48484994)
               

               
               421-899, gnl|Mm7|chr9 (108766846-108767374)
               


               
               996-1588, gnl|bosTau2|chr22 (39046910-39046319)
               

               
               996-1588, gnl|Hg17|chr3 (48484992-48484279)
               

               
               996-1588, gnl|Mm7|chr9 (108767376-108767982)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               cly (0.482567)
               

               
               eru (0.480192)
               

               
               amn (0.417711)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.482567)
               

               
               eru (0.480192)
               

               
               amn (0.417711)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               hyp (0.285673)
               

               
               cov (0.264306)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	421-899, gnl\|bosTau2\|chr22 (39047400-39046912)
	421-899, gnl\|Hg17\|chr3 (48485590-48484994)
	421-899, gnl\|Mm7\|chr9 (108766846-108767374)

	996-1588, gnl\|bosTau2\|chr22 (39046910-39046319)
	996-1588, gnl\|Hg17\|chr3 (48484992-48484279)
	996-1588, gnl\|Mm7\|chr9 (108767376-108767982)

	cly (0.482567)
	eru (0.480192)
	amn (0.417711)
	nco (0.323468)
	cag (0.302389)
	jej (0.296765)
	hyp (0.285673)
	cov (0.264306)
	med (0.232504)
	ece (0.229305)
	jca (0.22792)
	nep (0.183925)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	nje (0.16592)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	sug (0.127291)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	eje (0.0988338)