Non-Coding RNA Search

Ss1.1-Lng1-LNG010082F11.5

Sequence:


               
               GTCGGCGTGGGCCTAGCTCCACGCTTAGCCGCGGGCTGCCGTTTTGTTTCCGGAGACGCG
TACTGTCTCGCGGTGCTCTTGGCGGACCCTCATCCCTTCCTGGAGGACCCAGAGGCCTTC
TAGAAGCAGAAGGCAACTCTGCTGCTCTACAAACGAGTGGGATCCTTTCAGCCATGAAGC
AGGTGTTGCAACTCTATCTCTTAGGTGTGGTCCTGACCCTGCTCTCAGTTTTCGTTAGAC
TGATGGAGACCCTGGGGGGCTTACTGGAGAGCCCATCACCTGGGAGCTTCTGGACCACCA
GAGGTCAACTAGCCAACACAGAGGCCCCAAGAGCCTTCCAGAACATCCATCCAGAGGAGT
GTGATAGGACCTCCCTGCACCGGCTATAACCTTGGAATACCGGCCTGACTACATCCAGCC
AGCTGTCCCAGTTCCTGTGCAGGCAGCCTCAGCATCAGTGTTATCAGAGAACTGTTAACT
AGGCCTTTGAAGGGCCTCTCCATTTGGATACTCCTTGCTCTGGAATAAGCCTGTTTAATA
CACAGATGTGAGTGTGTTGCCTGTGACTGTGGAATGGAGCGACTGCACACTTCTCCCCAG
AGTCTGCTGTATGCTTTGCTGTCCTTGGCGGCATGGCTCTGCCTCCTCTTAGATGAAGGC
TTGTGCTGCAACTTCAGCTTTTGGGAGATGGTATTATTTTCAACCCTGTTTTCTAAGCAT
CTGCCAAGAGGACCTTTGGACTTGGATGTCTCGTGGTCAGTTTCTTTGATGTTCAGCTTC
TCTTCCATGAGAGCTCCTCTATGCAGATAACAGCTGAAGAGGTGTGTAGGTGGGCTGTAG
GCCTGGAGGGGTGGGGGGGGTTGGGGAGGTGAGGTATTCAGTGTCTCGTTTTCATTCTGT
ATTTTTAAGTGTTCTCCTCCAGCATAGCGTGTATTGTGTATTGGTCTGGAGGGGCAGTAG
GATGACAGTGCCTGCAGAGGACATGGACATTATGGCCACCATGTGGCTTAAATTTTTTTA
ATGAAATAAAGTTGAATGTGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGCGTGGGCCTAGCTCCACGCTTAGCCGCGGGCTGCCGTTTTGTTTCCGGAGACGCG
TACTGTCTCGCGGTGCTCTTGGCGGACCCTCATCCCTTCCTGGAGGACCCAGAGGCCTTC
TAGAAGCAGAAGGCAACTCTGCTGCTCTACAAACGAGTGGGATCCTTTCAGCCATGAAGC
AGGTGTTGCAACTCTATCTCTTAGGTGTGGTCCTGACCCTGCTCTCAGTTTTCGTTAGAC
TGATGGAGACCCTGGGGGGCTTACTGGAGAGCCCATCACCTGGGAGCTTCTGGACCACCA
GAGGTCAACTAGCCAACACAGAGGCCCCAAGAGCCTTCCAGAACATCCATCCAGAGGAGT
GTGATAGGACCTCCCTGCACCGGCTATAACCTTGGAATACCGGCCTGACTACATCCAGCC
AGCTGTCCCAGTTCCTGTGCAGGCAGCCTCAGCATCAGTGTTATCAGAGAACTGTTAACT
AGGCCTTTGAAGGGCCTCTCCATTTGGATACTCCTTGCTCTGGAATAAGCCTGTTTAATA
CACAGATGTGAGTGTGTTGCCTGTGACTGTGGAATGGAGCGACTGCACACTTCTCCCCAG
AGTCTGCTGTATGCTTTGCTGTCCTTGGCGGCATGGCTCTGCCTCCTCTTAGATGAAGGC
TTGTGCTGCAACTTCAGCTTTTGGGAGATGGTATTATTTTCAACCCTGTTTTCTAAGCAT
CTGCCAAGAGGACCTTTGGACTTGGATGTCTCGTGGTCAGTTTCTTTGATGTTCAGCTTC
TCTTCCATGAGAGCTCCTCTATGCAGATAACAGCTGAAGAGGTGTGTAGGTGGGCTGTAG
GCCTGGAGGGGTGGGGGGGGTTGGGGAGGTGAGGTATTCAGTGTCTCGTTTTCATTCTGT
ATTTTTAAGTGTTCTCCTCCAGCATAGCGTGTATTGTGTATTGGTCTGGAGGGGCAGTAG
GATGACAGTGCCTGCAGAGGACATGGACATTATGGCCACCATGTGGCTTAAATTTTTTTA
ATGAAATAAAGTTGAATGTGTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5Y2C8_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5Y2C8_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               579-778, + strand, RNAz p=0.917711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               579-778, + strand, RNAz p=0.917711

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_013332, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_013332, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               98-226, gnl|bosTau2|chr12 (25445522-25445650)
               

               
               98-226, gnl|Hg17|chr7 (127691204-127691326)
               


               
               251-840, gnl|bosTau2|chr12 (25445657-25446250)
               

               
               251-840, gnl|Hg17|chr7 (127691351-127692238)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-226, gnl|bosTau2|chr12 (25445522-25445650)
               

               
               98-226, gnl|Hg17|chr7 (127691204-127691326)
               


               
               251-840, gnl|bosTau2|chr12 (25445657-25446250)
               

               
               251-840, gnl|Hg17|chr7 (127691351-127692238)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	98-226, gnl\|bosTau2\|chr12 (25445522-25445650)
	98-226, gnl\|Hg17\|chr7 (127691204-127691326)

	251-840, gnl\|bosTau2\|chr12 (25445657-25446250)
	251-840, gnl\|Hg17\|chr7 (127691351-127692238)

	fty (0.17584)
	pla (0.133672)
	nmm (0.132802)
	ese (0.126502)
	bla (0.124347)