Ss1.1-Lng1-LNG010083B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCGGTGTGTGTGTCTCTGGAGACACGCACGTTTGCATGTTTCCTTAACTGCGCTTCGGA GAGGGGCCAGCGTCCTCGGGGAGGGCAGAGAGCCCCAGGCTGAGGTCCGGCGTCCACAAG CCTCTGCACAGTGTTCTGAGTTTGAAGCCCAGAGGAGTTCCCTGCTCAGCACAGCCAGGG ACAGAGGTAGAAGAAAAGAAGCCCTGGCGTAAGGCAGGTGACAAACATTACCATCCTAGC TGTGCACGATGCAGCAGGTGCAACCAGATGTTCACAGAAGGAGAGGAAATGTATCTTCAA GGTTCTACCGTTTGGCATCCCGACTGTAAGCAGTCCACCAAAACGGAGGAAAAGCTGCGG CCCACCAGGACCTCCTCTGAAAGCATTTATTCTAGACCAGGCTCCAGTATCCCTGGCTCC CCAGGTCATACCATCTATGCAAAAGTCGACAATGAAATCCTGGATTACAAGGATTTAGCA GCTATTCCCAAGGTCAAGGCGATTTACGACATCGAACGTCCAGATCTTATTACCTATGAG CCATTCTACTCTTCAGGCTATGATGACAAACAGGAGAGGCAGAGCCTGGGAGAGTCTCCA AGGACTTTGTCCCCGACTCCATCAGCAGAAGGCTACCAGGACGGTCGGGATCGGGCGATC CACCGGTCCACCAGCCAGGGCTCCATCAACTCCCCCGGGTACAGCCGGCACAGCTACACT CCGACCACGTCTCGCTCTCCCCAGCACTTCCACAGACCCGATCAAGGGATCAACATTTAC CGAAAACCACCCATCTACAAACAGCATGCTGCCTTGGCAGCCCAGAGCAAGTCTTCAGAA GACATCATCAAGTTTTCCAAGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCGGTGTGTGTGTCTCTGGAGACACGCACGTTTGCATGTTTCCTTAACTGCGCTTCGGA GAGGGGCCAGCGTCCTCGGGGAGGGCAGAGAGCCCCAGGCTGAGGTCCGGCGTCCACAAG CCTCTGCACAGTGTTCTGAGTTTGAAGCCCAGAGGAGTTCCCTGCTCAGCACAGCCAGGG ACAGAGGTAGAAGAAAAGAAGCCCTGGCGTAAGGCAGGTGACAAACATTACCATCCTAGC TGTGCACGATGCAGCAGGTGCAACCAGATGTTCACAGAAGGAGAGGAAATGTATCTTCAA GGTTCTACCGTTTGGCATCCCGACTGTAAGCAGTCCACCAAAACGGAGGAAAAGCTGCGG CCCACCAGGACCTCCTCTGAAAGCATTTATTCTAGACCAGGCTCCAGTATCCCTGGCTCC CCAGGTCATACCATCTATGCAAAAGTCGACAATGAAATCCTGGATTACAAGGATTTAGCA GCTATTCCCAAGGTCAAGGCGATTTACGACATCGAACGTCCAGATCTTATTACCTATGAG CCATTCTACTCTTCAGGCTATGATGACAAACAGGAGAGGCAGAGCCTGGGAGAGTCTCCA AGGACTTTGTCCCCGACTCCATCAGCAGAAGGCTACCAGGACGGTCGGGATCGGGCGATC CACCGGTCCACCAGCCAGGGCTCCATCAACTCCCCCGGGTACAGCCGGCACAGCTACACT CCGACCACGTCTCGCTCTCCCCAGCACTTCCACAGACCCGATCAAGGGATCAACATTTAC CGAAAACCACCCATCTACAAACAGCATGCTGCCTTGGCAGCCCAGAGCAAGTCTTCAGAA GACATCATCAAGTTTTCCAAGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 7-114, - strand, RNAz p=0.990958 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 7-114, - strand, RNAz p=0.990958 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 7-214, gnl|bosTau2|chr26 (22106445-22106236) | |
| 7-214, gnl|canFam2|chr28 (28340815-28341552) | |
| 7-214, gnl|dasNov1|scaffold_697 (88838-89506) | |
| 7-214, gnl|echTel1|scaffold_89104 (4870-5515) | |
| 7-214, gnl|hg17|chr10 (116276396-116277109) | |
| 7-214, gnl|Hg17|chr10 (116276619-116276408) | |
| 7-214, gnl|loxAfr1|scaffold_19695 (18582-17899) | |
| 7-214, gnl|mm7|chr19 (57034726-57035394) | |
| 7-214, gnl|Mm7|chr19 (57034937-57034738) | |
| 7-214, gnl|monDom2|scaffold_14 (47399807-47399082) | |
| 7-214, gnl|oryCun1|scaffold_100041 (110-806) | |
| 7-214, gnl|panTro1|chr8 (118441200-118441913) | |
| 7-214, gnl|rheMac2|chr9 (114179298-114180011) | |
| 7-214, gnl|rn3|chr1 (263676749-263677401) | |
| 439-594, gnl|bosTau2|chr26 (22033256-22033101) | |
| 439-594, gnl|canFam2|chr28 (28293789-28293952) | |
| 439-594, gnl|danRer3|chr12 (29561997-29561831) | |
| 439-594, gnl|dasNov1|scaffold_697 (42732-42895) | |
| 439-594, gnl|echTel1|scaffold_18563 (4184-4346) | |
| 439-594, gnl|fr1|chrUn (284077613-284077778) | |
| 439-594, gnl|galGal2|chr6 (26903612-26903789) | |
| 439-594, gnl|hg17|chr10 (116222723-116222886) | |
| 439-594, gnl|Hg17|chr10 (116222881-116222726) | |
| 439-594, gnl|loxAfr1|scaffold_6517 (73996-73833) | |
| 439-594, gnl|mm7|chr19 (56984075-56984238) | |
| 439-594, gnl|Mm7|chr19 (56984233-56984078) | |
| 439-594, gnl|monDom2|scaffold_14 (47460110-47459947) | |
| 439-594, gnl|oryCun1|scaffold_200326 (98851-98688) | |
| 439-594, gnl|panTro1|chr8 (118387429-118387592) | |
| 439-594, gnl|rheMac2|chr9 (114124204-114124367) | |
| 439-594, gnl|rn3|chr1 (263624070-263624233) | |
| 439-594, gnl|tetNig1|chr17 (1458232-1458396) | |
| 631-768, gnl|bosTau2|chr26 (22028152-22028016) | |
| 631-768, gnl|canFam2|chr28 (28286912-28287061) | |
| 631-768, gnl|danRer3|chr12 (29570154-29570016) | |
| 631-768, gnl|dasNov1|scaffold_697 (37983-38125) | |
| 631-768, gnl|fr1|chrUn (284077194-284077334) | |
| 631-768, gnl|galGal2|chr6 (26899106-26899255) | |
| 631-768, gnl|hg17|chr10 (116215435-116215584) | |
| 631-768, gnl|Hg17|chr10 (116215576-116215440) | |
| 631-768, gnl|loxAfr1|scaffold_360 (18726-18577) | |
| 631-768, gnl|mm7|chr19 (56977227-56977377) | |
| 631-768, gnl|Mm7|chr19 (56977369-56977233) | |
| 631-768, gnl|monDom2|scaffold_14 (47463733-47463581) | |
| 631-768, gnl|oryCun1|scaffold_200326 (104753-104604) | |
| 631-768, gnl|panTro1|chr8 (118380052-118380201) | |
| 631-768, gnl|rheMac2|chr9 (114117153-114117302) | |
| 631-768, gnl|rn3|chr1 (263616495-263616645) | |
| 631-768, gnl|tetNig1|chr17 (1457646-1457764) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-214, gnl|bosTau2|chr26 (22106445-22106236) | |
| 7-214, gnl|canFam2|chr28 (28340815-28341552) | |
| 7-214, gnl|dasNov1|scaffold_697 (88838-89506) | |
| 7-214, gnl|echTel1|scaffold_89104 (4870-5515) | |
| 7-214, gnl|hg17|chr10 (116276396-116277109) | |
| 7-214, gnl|Hg17|chr10 (116276619-116276408) | |
| 7-214, gnl|loxAfr1|scaffold_19695 (18582-17899) | |
| 7-214, gnl|mm7|chr19 (57034726-57035394) | |
| 7-214, gnl|Mm7|chr19 (57034937-57034738) | |
| 7-214, gnl|monDom2|scaffold_14 (47399807-47399082) | |
| 7-214, gnl|oryCun1|scaffold_100041 (110-806) | |
| 7-214, gnl|panTro1|chr8 (118441200-118441913) | |
| 7-214, gnl|rheMac2|chr9 (114179298-114180011) | |
| 7-214, gnl|rn3|chr1 (263676749-263677401) | |
| 439-594, gnl|bosTau2|chr26 (22033256-22033101) | |
| 439-594, gnl|canFam2|chr28 (28293789-28293952) | |
| 439-594, gnl|danRer3|chr12 (29561997-29561831) | |
| 439-594, gnl|dasNov1|scaffold_697 (42732-42895) | |
| 439-594, gnl|echTel1|scaffold_18563 (4184-4346) | |
| 439-594, gnl|fr1|chrUn (284077613-284077778) | |
| 439-594, gnl|galGal2|chr6 (26903612-26903789) | |
| 439-594, gnl|hg17|chr10 (116222723-116222886) | |
| 439-594, gnl|Hg17|chr10 (116222881-116222726) | |
| 439-594, gnl|loxAfr1|scaffold_6517 (73996-73833) | |
| 439-594, gnl|mm7|chr19 (56984075-56984238) | |
| 439-594, gnl|Mm7|chr19 (56984233-56984078) | |
| 439-594, gnl|monDom2|scaffold_14 (47460110-47459947) | |
| 439-594, gnl|oryCun1|scaffold_200326 (98851-98688) | |
| 439-594, gnl|panTro1|chr8 (118387429-118387592) | |
| 439-594, gnl|rheMac2|chr9 (114124204-114124367) | |
| 439-594, gnl|rn3|chr1 (263624070-263624233) | |
| 439-594, gnl|tetNig1|chr17 (1458232-1458396) | |
| 631-768, gnl|bosTau2|chr26 (22028152-22028016) | |
| 631-768, gnl|canFam2|chr28 (28286912-28287061) | |
| 631-768, gnl|danRer3|chr12 (29570154-29570016) | |
| 631-768, gnl|dasNov1|scaffold_697 (37983-38125) | |
| 631-768, gnl|fr1|chrUn (284077194-284077334) | |
| 631-768, gnl|galGal2|chr6 (26899106-26899255) | |
| 631-768, gnl|hg17|chr10 (116215435-116215584) | |
| 631-768, gnl|Hg17|chr10 (116215576-116215440) | |
| 631-768, gnl|loxAfr1|scaffold_360 (18726-18577) | |
| 631-768, gnl|mm7|chr19 (56977227-56977377) | |
| 631-768, gnl|Mm7|chr19 (56977369-56977233) | |
| 631-768, gnl|monDom2|scaffold_14 (47463733-47463581) | |
| 631-768, gnl|oryCun1|scaffold_200326 (104753-104604) | |
| 631-768, gnl|panTro1|chr8 (118380052-118380201) | |
| 631-768, gnl|rheMac2|chr9 (114117153-114117302) | |
| 631-768, gnl|rn3|chr1 (263616495-263616645) | |
| 631-768, gnl|tetNig1|chr17 (1457646-1457764) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) |