Ss1.1-Lng1-LNG010083E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTTGAACAGCGACTGCTTGTGACTGAGCTGACACAGCTCTTGGGCCCCAGACAAGAGA CAGAGGTGCCTTCACTGCTAGGGCTGGAGAAATCGGACCTTCTGGAGCTCATGCCACCCT CAGAGGATTGTGTGTGGATGAGAGCCCGGCTTGCACTGGAAGTGGAGGAGCTGCTCAAGA AGAAATGTTTCACTCTGCTCTGCTACCACAATCCCGATTCAGATTCAGACGGTGAAACCC GGAAGGCTGAAAAGGTGGGGAAGCTTGCAGAGGTCCTGATGGATGAGAAGCAGCAGTGCC AGGATGCCAAGAGCCAGCAGAAGGAGCAGATGGTGCTACTGGAGAAGAAGAGTGCCACCT ACTCCCAGGTGCTTCTCCGCTGCCTGGCATTGCTGCAGAGGCTACTTCAGGAACACCGGC TGAAGGCTCAGTCAGAGCTGGACCGCAGCAATGCCCAGTACCTGGAGATCAAGTGCAGCA CCCTGATCCTGAAGCTGCGGATAGAAGAGCTAAAGATTTTGTCTGACACTTACACTGCTG AGAAGGTGGAAGTTCATCGTCTCATTAGGGACCGTTTGGAGGGGGCCATTCACCTACAAG AGCAGGACATGGAGAAGTCCCGACAGGTCCTGAACACCTATGAGGTCCTTGGAGAGGAGT TTGATAGGCTGGTGAAAGAGTACACCCAACTCAAGCAGGCAACTGAGAACAAGCGCTGGG CCCTCCAGGAGTTCGACAAGGCCTACCGCTGAGCATCGTTGGGGTCAGGAGGCCCAGCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTTGAACAGCGACTGCTTGTGACTGAGCTGACACAGCTCTTGGGCCCCAGACAAGAGA CAGAGGTGCCTTCACTGCTAGGGCTGGAGAAATCGGACCTTCTGGAGCTCATGCCACCCT CAGAGGATTGTGTGTGGATGAGAGCCCGGCTTGCACTGGAAGTGGAGGAGCTGCTCAAGA AGAAATGTTTCACTCTGCTCTGCTACCACAATCCCGATTCAGATTCAGACGGTGAAACCC GGAAGGCTGAAAAGGTGGGGAAGCTTGCAGAGGTCCTGATGGATGAGAAGCAGCAGTGCC AGGATGCCAAGAGCCAGCAGAAGGAGCAGATGGTGCTACTGGAGAAGAAGAGTGCCACCT ACTCCCAGGTGCTTCTCCGCTGCCTGGCATTGCTGCAGAGGCTACTTCAGGAACACCGGC TGAAGGCTCAGTCAGAGCTGGACCGCAGCAATGCCCAGTACCTGGAGATCAAGTGCAGCA CCCTGATCCTGAAGCTGCGGATAGAAGAGCTAAAGATTTTGTCTGACACTTACACTGCTG AGAAGGTGGAAGTTCATCGTCTCATTAGGGACCGTTTGGAGGGGGCCATTCACCTACAAG AGCAGGACATGGAGAAGTCCCGACAGGTCCTGAACACCTATGAGGTCCTTGGAGAGGAGT TTGATAGGCTGGTGAAAGAGTACACCCAACTCAAGCAGGCAACTGAGAACAAGCGCTGGG CCCTCCAGGAGTTCGACAAGGCCTACCGCTGAGCATCGTTGGGGTCAGGAGGCCCAGCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 366-484, - strand, RNAz p=0.576358 | |
| 565-780, + strand, RNAz p=0.683972 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 366-484, - strand, RNAz p=0.576358 | |
| 565-780, + strand, RNAz p=0.683972 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BX247981, + |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 2-126, gnl|bosTau2|chr10 (14092489-14092613) | |
| 2-126, gnl|canFam2|chr8 (6280177-6280354) | |
| 2-126, gnl|canFam2|chr8 (6280183-6280316) | |
| 2-126, gnl|dasNov1|scaffold_16655 (84980-85169) | |
| 2-126, gnl|dasNov1|scaffold_16655 (84986-85119) | |
| 2-126, gnl|echTel1|scaffold_308447 (48265-48083) | |
| 2-126, gnl|echTel1|scaffold_308447 (48259-48126) | |
| 2-126, gnl|hg17|chr1 (167070645-167070778) | |
| 2-126, gnl|hg17|chr14 (22490600-22490785) | |
| 2-126, gnl|Hg17|chr14 (22490727-22490603) | |
| 2-126, gnl|loxAfr1|scaffold_49335 (9355-9172) | |
| 2-126, gnl|loxAfr1|scaffold_49335 (9349-9216) | |
| 2-126, gnl|mm7|chr14 (49414862-49415022) | |
| 2-126, gnl|mm7|chr14 (49414871-49415001) | |
| 2-126, gnl|Mm7|chr14 (49414989-49414865) | |
| 2-126, gnl|monDom2|scaffold_12 (26896441-26896263) | |
| 2-126, gnl|monDom2|scaffold_12 (26896434-26896301) | |
| 2-126, gnl|oryCun1|scaffold_139745 (23081-23214) | |
| 2-126, gnl|oryCun1|scaffold_199976 (13024-13203) | |
| 2-126, gnl|panTro1|chr1 (149344585-149344718) | |
| 2-126, gnl|panTro1|chr15 (21457311-21457494) | |
| 2-126, gnl|rheMac2|chr1 (200061674-200061807) | |
| 2-126, gnl|rheMac2|chr7 (85769548-85769727) | |
| 2-126, gnl|rn3|chr10 (1488025-1488158) | |
| 2-126, gnl|rn3|chr15 (32622685-32622857) | |
| 366-500, gnl|bosTau2|chr10 (14095442-14095576) | |
| 366-500, gnl|canFam2|chr8 (6277397-6277481) | |
| 366-500, gnl|canFam2|chr8 (6277397-6277480) | |
| 366-500, gnl|dasNov1|scaffold_16655 (81863-81947) | |
| 366-500, gnl|dasNov1|scaffold_16655 (81863-81946) | |
| 366-500, gnl|echTel1|scaffold_308447 (51668-51579) | |
| 366-500, gnl|echTel1|scaffold_308447 (51668-51580) | |
| 366-500, gnl|hg17|chr1 (167070269-167070352) | |
| 366-500, gnl|hg17|chr14 (22486650-22486734) | |
| 366-500, gnl|Hg17|chr14 (22486783-22486649) | |
| 366-500, gnl|loxAfr1|scaffold_49335 (11875-11791) | |
| 366-500, gnl|loxAfr1|scaffold_49335 (11875-11792) | |
| 366-500, gnl|mm7|chr14 (49409779-49409863) | |
| 366-500, gnl|mm7|chr14 (49409779-49409862) | |
| 366-500, gnl|Mm7|chr14 (49409912-49409778) | |
| 366-500, gnl|monDom2|scaffold_12 (26897696-26897612) | |
| 366-500, gnl|monDom2|scaffold_12 (26897696-26897613) | |
| 366-500, gnl|oryCun1|scaffold_139745 (19408-19492) | |
| 366-500, gnl|oryCun1|scaffold_139745 (19408-19491) | |
| 366-500, gnl|panTro1|chr1 (149344209-149344292) | |
| 366-500, gnl|panTro1|chr15 (21453368-21453452) | |
| 366-500, gnl|rheMac2|chr1 (200061299-200061382) | |
| 366-500, gnl|rheMac2|chr19 (34933792-34933708) | |
| 366-500, gnl|rn3|chr10 (1487655-1487733) | |
| 366-500, gnl|rn3|chr15 (32617619-32617703) | |
| 565-780, gnl|bosTau2|chr10 (14096134-14096349) | |
| 565-780, gnl|canFam2|chr8 (6275571-6275985) | |
| 565-780, gnl|dasNov1|scaffold_16655 (80912-81306) | |
| 565-780, gnl|echTel1|scaffold_308447 (52541-52166) | |
| 565-780, gnl|hg17|chr1 (167069786-167070208) | |
| 565-780, gnl|Hg17|chr14 (22485761-22485546) | |
| 565-780, gnl|loxAfr1|scaffold_49335 (12854-12444) | |
| 565-780, gnl|mm7|chr14 (49407843-49408262) | |
| 565-780, gnl|Mm7|chr14 (49408261-49408041) | |
| 565-780, gnl|monDom2|scaffold_12 (26898685-26898267) | |
| 565-780, gnl|oryCun1|scaffold_139745 (18455-18850) | |
| 565-780, gnl|panTro1|chr1 (149343726-149344148) | |
| 565-780, gnl|rheMac2|chr1 (200060820-200061238) | |
| 565-780, gnl|rn3|chr10 (1487225-1487589) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-126, gnl|bosTau2|chr10 (14092489-14092613) | |
| 2-126, gnl|canFam2|chr8 (6280177-6280354) | |
| 2-126, gnl|canFam2|chr8 (6280183-6280316) | |
| 2-126, gnl|dasNov1|scaffold_16655 (84980-85169) | |
| 2-126, gnl|dasNov1|scaffold_16655 (84986-85119) | |
| 2-126, gnl|echTel1|scaffold_308447 (48265-48083) | |
| 2-126, gnl|echTel1|scaffold_308447 (48259-48126) | |
| 2-126, gnl|hg17|chr1 (167070645-167070778) | |
| 2-126, gnl|hg17|chr14 (22490600-22490785) | |
| 2-126, gnl|Hg17|chr14 (22490727-22490603) | |
| 2-126, gnl|loxAfr1|scaffold_49335 (9355-9172) | |
| 2-126, gnl|loxAfr1|scaffold_49335 (9349-9216) | |
| 2-126, gnl|mm7|chr14 (49414862-49415022) | |
| 2-126, gnl|mm7|chr14 (49414871-49415001) | |
| 2-126, gnl|Mm7|chr14 (49414989-49414865) | |
| 2-126, gnl|monDom2|scaffold_12 (26896441-26896263) | |
| 2-126, gnl|monDom2|scaffold_12 (26896434-26896301) | |
| 2-126, gnl|oryCun1|scaffold_139745 (23081-23214) | |
| 2-126, gnl|oryCun1|scaffold_199976 (13024-13203) | |
| 2-126, gnl|panTro1|chr1 (149344585-149344718) | |
| 2-126, gnl|panTro1|chr15 (21457311-21457494) | |
| 2-126, gnl|rheMac2|chr1 (200061674-200061807) | |
| 2-126, gnl|rheMac2|chr7 (85769548-85769727) | |
| 2-126, gnl|rn3|chr10 (1488025-1488158) | |
| 2-126, gnl|rn3|chr15 (32622685-32622857) | |
| 366-500, gnl|bosTau2|chr10 (14095442-14095576) | |
| 366-500, gnl|canFam2|chr8 (6277397-6277481) | |
| 366-500, gnl|canFam2|chr8 (6277397-6277480) | |
| 366-500, gnl|dasNov1|scaffold_16655 (81863-81947) | |
| 366-500, gnl|dasNov1|scaffold_16655 (81863-81946) | |
| 366-500, gnl|echTel1|scaffold_308447 (51668-51579) | |
| 366-500, gnl|echTel1|scaffold_308447 (51668-51580) | |
| 366-500, gnl|hg17|chr1 (167070269-167070352) | |
| 366-500, gnl|hg17|chr14 (22486650-22486734) | |
| 366-500, gnl|Hg17|chr14 (22486783-22486649) | |
| 366-500, gnl|loxAfr1|scaffold_49335 (11875-11791) | |
| 366-500, gnl|loxAfr1|scaffold_49335 (11875-11792) | |
| 366-500, gnl|mm7|chr14 (49409779-49409863) | |
| 366-500, gnl|mm7|chr14 (49409779-49409862) | |
| 366-500, gnl|Mm7|chr14 (49409912-49409778) | |
| 366-500, gnl|monDom2|scaffold_12 (26897696-26897612) | |
| 366-500, gnl|monDom2|scaffold_12 (26897696-26897613) | |
| 366-500, gnl|oryCun1|scaffold_139745 (19408-19492) | |
| 366-500, gnl|oryCun1|scaffold_139745 (19408-19491) | |
| 366-500, gnl|panTro1|chr1 (149344209-149344292) | |
| 366-500, gnl|panTro1|chr15 (21453368-21453452) | |
| 366-500, gnl|rheMac2|chr1 (200061299-200061382) | |
| 366-500, gnl|rheMac2|chr19 (34933792-34933708) | |
| 366-500, gnl|rn3|chr10 (1487655-1487733) | |
| 366-500, gnl|rn3|chr15 (32617619-32617703) | |
| 565-780, gnl|bosTau2|chr10 (14096134-14096349) | |
| 565-780, gnl|canFam2|chr8 (6275571-6275985) | |
| 565-780, gnl|dasNov1|scaffold_16655 (80912-81306) | |
| 565-780, gnl|echTel1|scaffold_308447 (52541-52166) | |
| 565-780, gnl|hg17|chr1 (167069786-167070208) | |
| 565-780, gnl|Hg17|chr14 (22485761-22485546) | |
| 565-780, gnl|loxAfr1|scaffold_49335 (12854-12444) | |
| 565-780, gnl|mm7|chr14 (49407843-49408262) | |
| 565-780, gnl|Mm7|chr14 (49408261-49408041) | |
| 565-780, gnl|monDom2|scaffold_12 (26898685-26898267) | |
| 565-780, gnl|oryCun1|scaffold_139745 (18455-18850) | |
| 565-780, gnl|panTro1|chr1 (149343726-149344148) | |
| 565-780, gnl|rheMac2|chr1 (200060820-200061238) | |
| 565-780, gnl|rn3|chr10 (1487225-1487589) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) |