Non-Coding RNA Search

Ss1.1-Lng1-LNG010084E05.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCTTCCTTCTCAGTTT
ATTAGCCCCCACCCAGCCTCCAGCAAGTCCCTCCGCTCCAGCCTCCAGTCCCCTGCTGCC
CCGCCAGCGAGAGCCAGGGGCCCTCCTCAGCGTCAGGGTTTTCTAAGTCCATGCAAGCGG
CCCCTCGTGCGCAGCCGGGGCGGCGTTCGAGTCCCGAAGTTCACTGCAATCCCGGCGCTT
GGGGACCAATCCTGGCGGGCGTCGGCGGGAAGCTGTACCCTCAATCATCTGGGGAACAGG
CCAGAGGCAACTGATCGGGACTGCCCACGCTGCCAGTACTGGAGCTTCCATCGCCCAGGT
CACGGGGACCGCACGGGGGCAAAGCCAGCTCGGGTGTTGGCGCAGCGCCTGAGCCCCCCG
AGCCGCCGGGGCCGCCGCGGGGGCCCCACTCCTCGCCCAGCGCCAGGCAGAGCTCCTTAA
GCGCCAGGTTCTCCCGCAGCAGCTCCTCCTGGCGGCCCTCCAGCTCCGCCAGCTTCTGCC
AACAACCGCCTAGGTCCTCGCGCACGGCTCGGGATGCTTGGGTTCCGAAGAGCTGCCACT
GGCGCGCGGCGCGCCGCCCGCGCTGGCGCTCCGAGTCCAGGAAGCAGCAGAGGTCGCGCA
GCTCGCGGTTCTCAGCTTGTAGGCGCCGGTTAAGCTGCTTGAGCTCGCGGATCTCGCCCA
GATGACCCTGTAGCTGCCGATTCACCTCCTGCATGAGGCGGCCGCGCTGCACCAGAGCCG
CCAGGCGCGCCGCCTCCTCCCGCCGCAGGCGCCGCACCAGCTCCTCCTTGCCCAGAGCCG
CCATCTCCTCATCCGTCAGCTCCTCCAGGCCGCCCGTCTCGGCCTCCATGGCTGCTCAGG
CCTCTGGAGCATCGCCTGCCCGCCGCCGCGGCCCAGGAGCCCCACGACGAGCTCCGCGGC
GCCGGGGTTCTAGCACCCGCTCGGCAGACGGTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCTTCCTTCTCAGTTT
ATTAGCCCCCACCCAGCCTCCAGCAAGTCCCTCCGCTCCAGCCTCCAGTCCCCTGCTGCC
CCGCCAGCGAGAGCCAGGGGCCCTCCTCAGCGTCAGGGTTTTCTAAGTCCATGCAAGCGG
CCCCTCGTGCGCAGCCGGGGCGGCGTTCGAGTCCCGAAGTTCACTGCAATCCCGGCGCTT
GGGGACCAATCCTGGCGGGCGTCGGCGGGAAGCTGTACCCTCAATCATCTGGGGAACAGG
CCAGAGGCAACTGATCGGGACTGCCCACGCTGCCAGTACTGGAGCTTCCATCGCCCAGGT
CACGGGGACCGCACGGGGGCAAAGCCAGCTCGGGTGTTGGCGCAGCGCCTGAGCCCCCCG
AGCCGCCGGGGCCGCCGCGGGGGCCCCACTCCTCGCCCAGCGCCAGGCAGAGCTCCTTAA
GCGCCAGGTTCTCCCGCAGCAGCTCCTCCTGGCGGCCCTCCAGCTCCGCCAGCTTCTGCC
AACAACCGCCTAGGTCCTCGCGCACGGCTCGGGATGCTTGGGTTCCGAAGAGCTGCCACT
GGCGCGCGGCGCGCCGCCCGCGCTGGCGCTCCGAGTCCAGGAAGCAGCAGAGGTCGCGCA
GCTCGCGGTTCTCAGCTTGTAGGCGCCGGTTAAGCTGCTTGAGCTCGCGGATCTCGCCCA
GATGACCCTGTAGCTGCCGATTCACCTCCTGCATGAGGCGGCCGCGCTGCACCAGAGCCG
CCAGGCGCGCCGCCTCCTCCCGCCGCAGGCGCCGCACCAGCTCCTCCTTGCCCAGAGCCG
CCATCTCCTCATCCGTCAGCTCCTCCAGGCCGCCCGTCTCGGCCTCCATGGCTGCTCAGG
CCTCTGGAGCATCGCCTGCCCGCCGCCGCGGCCCAGGAGCCCCACGACGAGCTCCGCGGC
GCCGGGGTTCTAGCACCCGCTCGGCAGACGGTCTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               DIPA_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               DIPA_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               886-996, - strand, RNAz p=0.886132

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               886-996, - strand, RNAz p=0.886132

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-996, gnl|bosTau2|chr29 (30506019-30505066)
               

               
               42-996, gnl|Hg17|chr11 (65415682-65414721)
               

               
               42-996, gnl|Mm7|chr19 (5351352-5352319)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-996, gnl|bosTau2|chr29 (30506019-30505066)
               

               
               42-996, gnl|Hg17|chr11 (65415682-65414721)
               

               
               42-996, gnl|Mm7|chr19 (5351352-5352319)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               ece (0.45861)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	42-996, gnl\|bosTau2\|chr29 (30506019-30505066)
	42-996, gnl\|Hg17\|chr11 (65415682-65414721)
	42-996, gnl\|Mm7\|chr19 (5351352-5352319)

	ece (0.45861)
	pla (0.267344)
	eep (0.245128)
	fli (0.202881)
	fcc (0.197785)
	cje (0.165235)
	hlv (0.139256)
	che (0.136314)
	cov (0.132153)
	ebs (0.118301)
	jca (0.11396)