Non-Coding RNA Search

Ss1.1-Lng1-LNG010084H07.5

Sequence:


               
               CGCGCAGCACGCCCGGGGCCCGGATGGCGGCCGCGGTGGCGGCGGCAGCTGGAAGTGGGC
CTGCCCGGGAAGAGGACAGCTCAGCTGGGGAGGCGGCGGCCCCGCAGCCCCAAGCCCCGA
CAAGTACGCCTGGGGCTCGTCTCTCGAGGCTACCTCTGGCGCGAGTGAAGGCCTTGGTGA
AGGCGGACCCCGACGTGACGCTCGCGGGACAGGAAGCCATCTTCATCCTGGCACGAGCCG
CGGAACTGTTTGTGGAGACCATTGCAAAGGATGCCTACTGCTGTGCTCAACAGGGAAAGA
GGAAAACCCTTCAGAGGAGAGATTTGGATAATGCAATAGAAGCTGTGGACGAATTTGCTT
TCCTGGAAGGTACTTTGGATTGATTGCTGAACTGATTGATTGCTGAACTTTTGTGAGCCT
GTACCTGCATCCTTCAGCTAGGCCCTCTGCAGGCCTCGGCTTTGAAGAACAGAGTCTTTG
GAATATTGTACTTACATGCTTTTCCTGTTCTACCCTCACCTAAGCCTGGTTAAGCAGAGA
TCTCACTTGTTAGTTTTTCTCTACAAGGTCTTCCACTATTTGTGTCTTCCATTTCTGGCC
TGGCTGTGGCAGCTGCAGCTTAGGGTAAAGATGTAGAAAATGATTTGTGCAGGTTGCTTA
ATGTTATGATGCTATGAATGATAAGGACCAAATAAAGGTCTCTGATCAACTTCAAAAAAA
AAAAAAAAAAAATCTTGCCTTTTGTTTTTGCCCCCATGACCGGAGAACCTCCCTGCCTAG
TCACAGATCTTTCTGATCTTCTCTGCTAGCCATTCGTAAACCTCACTCTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCAGCACGCCCGGGGCCCGGATGGCGGCCGCGGTGGCGGCGGCAGCTGGAAGTGGGC
CTGCCCGGGAAGAGGACAGCTCAGCTGGGGAGGCGGCGGCCCCGCAGCCCCAAGCCCCGA
CAAGTACGCCTGGGGCTCGTCTCTCGAGGCTACCTCTGGCGCGAGTGAAGGCCTTGGTGA
AGGCGGACCCCGACGTGACGCTCGCGGGACAGGAAGCCATCTTCATCCTGGCACGAGCCG
CGGAACTGTTTGTGGAGACCATTGCAAAGGATGCCTACTGCTGTGCTCAACAGGGAAAGA
GGAAAACCCTTCAGAGGAGAGATTTGGATAATGCAATAGAAGCTGTGGACGAATTTGCTT
TCCTGGAAGGTACTTTGGATTGATTGCTGAACTGATTGATTGCTGAACTTTTGTGAGCCT
GTACCTGCATCCTTCAGCTAGGCCCTCTGCAGGCCTCGGCTTTGAAGAACAGAGTCTTTG
GAATATTGTACTTACATGCTTTTCCTGTTCTACCCTCACCTAAGCCTGGTTAAGCAGAGA
TCTCACTTGTTAGTTTTTCTCTACAAGGTCTTCCACTATTTGTGTCTTCCATTTCTGGCC
TGGCTGTGGCAGCTGCAGCTTAGGGTAAAGATGTAGAAAATGATTTGTGCAGGTTGCTTA
ATGTTATGATGCTATGAATGATAAGGACCAAATAAAGGTCTCTGATCAACTTCAAAAAAA
AAAAAAAAAAAATCTTGCCTTTTGTTTTTGCCCCCATGACCGGAGAACCTCCCTGCCTAG
TCACAGATCTTTCTGATCTTCTCTGCTAGCCATTCGTAAACCTCACTCTTTTTTTTTTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53TR2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53TR2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               723-840, - strand, RNAz p=0.617315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               723-840, - strand, RNAz p=0.617315

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               35-252, gnl|bosTau2|chr11 (8298865-8298648)
               

               
               35-252, gnl|Hg17|chr2 (75097464-75097684)
               

               
               35-252, gnl|Mm7|chr6 (82678388-82678165)
               


               
               368-840, gnl|bosTau2|chr11 (8288467-8288039)
               

               
               368-840, gnl|Hg17|chr2 (75108189-75108635)
               

               
               368-840, gnl|Mm7|chr6 (82673589-82673178)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-252, gnl|bosTau2|chr11 (8298865-8298648)
               

               
               35-252, gnl|Hg17|chr2 (75097464-75097684)
               

               
               35-252, gnl|Mm7|chr6 (82678388-82678165)
               


               
               368-840, gnl|bosTau2|chr11 (8288467-8288039)
               

               
               368-840, gnl|Hg17|chr2 (75108189-75108635)
               

               
               368-840, gnl|Mm7|chr6 (82673589-82673178)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

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               sme (0.91631)
               

               
               cut (0.679694)
               

               
               eye (0.511509)
               

               
               cki (0.495704)
               

               
               pgl (0.473934)
               

               
               nca (0.410621)
               

               
               hea (0.408998)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               spc (0.340097)
               

               
               lun (0.300978)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.91631)
               

               
               cut (0.679694)
               

               
               eye (0.511509)
               

               
               cki (0.495704)
               

               
               pgl (0.473934)
               

               
               nca (0.410621)
               

               
               hea (0.408998)
               

               
               fli (0.405762)
               

               
               pla (0.401016)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               spc (0.340097)
               

               
               lun (0.300978)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	35-252, gnl\|bosTau2\|chr11 (8298865-8298648)
	35-252, gnl\|Hg17\|chr2 (75097464-75097684)
	35-252, gnl\|Mm7\|chr6 (82678388-82678165)

	368-840, gnl\|bosTau2\|chr11 (8288467-8288039)
	368-840, gnl\|Hg17\|chr2 (75108189-75108635)
	368-840, gnl\|Mm7\|chr6 (82673589-82673178)

	sme (0.91631)
	cut (0.679694)
	eye (0.511509)
	cki (0.495704)
	pgl (0.473934)
	nca (0.410621)
	hea (0.408998)
	fli (0.405762)
	pla (0.401016)
	ova (0.387397)
	elu (0.385356)
	sto (0.359648)
	spc (0.340097)
	lun (0.300978)
	cst (0.280073)
	ssp (0.271039)
	ste (0.270416)
	thg (0.253582)
	bla (0.248694)
	med (0.232504)
	mgp (0.230681)
	tes (0.207814)
	nbm (0.198649)
	aor (0.195274)
	cmu (0.186393)
	nep (0.183925)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	rec (0.17307)
	mga (0.160205)
	lin (0.145603)
	pty (0.142714)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	lyg (0.133103)
	nmm (0.132802)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	eep (0.122564)
	ebs (0.118301)
	jej (0.0989218)
	ldo (0.0970026)