Non-Coding RNA Search

Ss1.1-Lng1-LNG010085C09.5

Sequence:


               
               TCCGCCAGCCGAACTGGCCCTGGACGCAGCGGAGCCCAGCAGACTACAACTCCCAGAGGT
CTCACGGCTGCAGCTCGCTGGTCTGGCCTGGACTCTGGTTAGTGACACATTGGCCGGCCA
ATGCCTTCAGAAGTGGCACCCTTTCTCACAGTCAGAGACCAATCAGGGGTTGGTTGGAGG
GATGTTTCCTATTTTGAGGCATCCACTCAGGAAAAAAAATGGAATTGAAAGGAAAAATGT
TTCAGCCCCGCTCTCTGTCTAAAAAAGGAGAGAATGCTTTCTTTTCTTTTAAAAAAAGGT
CGATGATCTAGTTTTCCTGATCCAGCTTCCAATATTCTGTATGTTCTGTCGTTTGTGGAC
AACATTTCCTGGTTTCAGATTGTCGATGTTATTGTTGGGAAAGACGAAAAAGGCAGAAAG
ATCCCAGAATATCTGATCCATTTTAATGGTTGGAACAGGAGCTGGGATAGATGGGCAGCT
GAAGATCATGTCCTTCGTGATACCGATGAAAATCGGAGATTACAGCGTAAATTGGCAAGA
AAAGCTGTAGCTCGCCTGAGAAGCACAGGAAGAAAGAGGAAGCGCTGCAGGTTGCCTGGG
GTGGACTCTGTCTTGAAAAGCCTCCCCGCGGAAGAAAAAGATGAAAATGATGAAAACTCA
ATAAGCAGTTCCTCTGATGACAATAGTGAAGAAAAGGATGAAGAAATAAGTGAAGAGAGT
GATATTGAAGAAAAGACGGAAACGAAGGAAGACCCAGAGCTGCACGCGAAAAGGGAGATG
GAAGAAAGAACAATAACTATAGAAATCCCCGAAGTTCTGAAGAAGAAGCTTGAGGATGAT
TGTTATTACATCAACAGAAGGAAACGGTTAGTGAAACTCCCCTGCCAAACCAACATCATC
ACCATTTTGGAATCGTACGTGAAGCATTTTGCTATCAATGCAGCCTTTTCGGCCAATGAG
AGGCCTCGTCACCATCACGCTATGCCACATGCCAACATGAATGTGCATTATATCCCAGCA
GAAAAGAACGTCGACCTTTGTAAGGAAATGGTGGATGGATTAAGAATAACCTTTGATTAC
ACTCTCCCACTGGTTTTGCTCTACCCGTATGAACAAGTTCAGTATAAAAAGGTGACTTCG
TCCAAATTTTTTCTTCCGATTAAGGAAAGTACCACGAACACTAACAGGAACCAGGAGGAG
CTCTCGCCAAGCCCACCTTTGTTGAATCCGTCCACACCACAGTCCACGGAGAGCCAGCCA
ACCACCGGCGAGCCAGCCACCCCCAAGAGGCGCAAAGCCGAGCCCGAAGCCTTGCAGTCC
CTGAGGCGGTCCACGCGCCACTCCGCCAACTGCGACAGGCTGTCTGAGAGCAGCGCCTCT
CCTCAGCCCAAGCGCCGGCAGCAGGACACGTCGGCCAGCATGCCCAAGCTCTTCCTCCAC
CTGGAAAAGAAGACGCCTGTTCATAGCAGATCTTCCTCGCCTGTTCCTCTAACCCCCAGC
AAGGAAGGGAGCACGGTGTTTGCTGGCTTTGAAGGCAGAAGAACTAATGAAATCAATGAG
GTCCTCTCCTGGAAACTTGTACCCGACAGCTACCCCCCAGGTGACCAGCCACCTCCACCC
TCTTACATTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGCCAGCCGAACTGGCCCTGGACGCAGCGGAGCCCAGCAGACTACAACTCCCAGAGGT
CTCACGGCTGCAGCTCGCTGGTCTGGCCTGGACTCTGGTTAGTGACACATTGGCCGGCCA
ATGCCTTCAGAAGTGGCACCCTTTCTCACAGTCAGAGACCAATCAGGGGTTGGTTGGAGG
GATGTTTCCTATTTTGAGGCATCCACTCAGGAAAAAAAATGGAATTGAAAGGAAAAATGT
TTCAGCCCCGCTCTCTGTCTAAAAAAGGAGAGAATGCTTTCTTTTCTTTTAAAAAAAGGT
CGATGATCTAGTTTTCCTGATCCAGCTTCCAATATTCTGTATGTTCTGTCGTTTGTGGAC
AACATTTCCTGGTTTCAGATTGTCGATGTTATTGTTGGGAAAGACGAAAAAGGCAGAAAG
ATCCCAGAATATCTGATCCATTTTAATGGTTGGAACAGGAGCTGGGATAGATGGGCAGCT
GAAGATCATGTCCTTCGTGATACCGATGAAAATCGGAGATTACAGCGTAAATTGGCAAGA
AAAGCTGTAGCTCGCCTGAGAAGCACAGGAAGAAAGAGGAAGCGCTGCAGGTTGCCTGGG
GTGGACTCTGTCTTGAAAAGCCTCCCCGCGGAAGAAAAAGATGAAAATGATGAAAACTCA
ATAAGCAGTTCCTCTGATGACAATAGTGAAGAAAAGGATGAAGAAATAAGTGAAGAGAGT
GATATTGAAGAAAAGACGGAAACGAAGGAAGACCCAGAGCTGCACGCGAAAAGGGAGATG
GAAGAAAGAACAATAACTATAGAAATCCCCGAAGTTCTGAAGAAGAAGCTTGAGGATGAT
TGTTATTACATCAACAGAAGGAAACGGTTAGTGAAACTCCCCTGCCAAACCAACATCATC
ACCATTTTGGAATCGTACGTGAAGCATTTTGCTATCAATGCAGCCTTTTCGGCCAATGAG
AGGCCTCGTCACCATCACGCTATGCCACATGCCAACATGAATGTGCATTATATCCCAGCA
GAAAAGAACGTCGACCTTTGTAAGGAAATGGTGGATGGATTAAGAATAACCTTTGATTAC
ACTCTCCCACTGGTTTTGCTCTACCCGTATGAACAAGTTCAGTATAAAAAGGTGACTTCG
TCCAAATTTTTTCTTCCGATTAAGGAAAGTACCACGAACACTAACAGGAACCAGGAGGAG
CTCTCGCCAAGCCCACCTTTGTTGAATCCGTCCACACCACAGTCCACGGAGAGCCAGCCA
ACCACCGGCGAGCCAGCCACCCCCAAGAGGCGCAAAGCCGAGCCCGAAGCCTTGCAGTCC
CTGAGGCGGTCCACGCGCCACTCCGCCAACTGCGACAGGCTGTCTGAGAGCAGCGCCTCT
CCTCAGCCCAAGCGCCGGCAGCAGGACACGTCGGCCAGCATGCCCAAGCTCTTCCTCCAC
CTGGAAAAGAAGACGCCTGTTCATAGCAGATCTTCCTCGCCTGTTCCTCTAACCCCCAGC
AAGGAAGGGAGCACGGTGTTTGCTGGCTTTGAAGGCAGAAGAACTAATGAAATCAATGAG
GTCCTCTCCTGGAAACTTGTACCCGACAGCTACCCCCCAGGTGACCAGCCACCTCCACCC
TCTTACATTTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21411116|gb|AAH31210.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21411116|gb|AAH31210.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-568, - strand, RNAz p=0.962498

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-568, - strand, RNAz p=0.962498

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               379-1631, gnl|bosTau2|chr2 (54829629-54830870)
               

               
               379-1631, gnl|Hg17|chr2 (234558876-234556991)
               

               
               379-1631, gnl|Mm7|chrX (163446707-163433006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               379-1631, gnl|bosTau2|chr2 (54829629-54830870)
               

               
               379-1631, gnl|Hg17|chr2 (234558876-234556991)
               

               
               379-1631, gnl|Mm7|chrX (163446707-163433006)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eep (0.245128)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cty (0.10408)

	379-1631, gnl\|bosTau2\|chr2 (54829629-54830870)
	379-1631, gnl\|Hg17\|chr2 (234558876-234556991)
	379-1631, gnl\|Mm7\|chrX (163446707-163433006)

	eep (0.245128)
	nco (0.161734)
	tbr (0.154178)
	ssp (0.13552)
	ute (0.132784)
	cty (0.10408)