Non-Coding RNA Search

Ss1.1-Lng1-LNG010085D08.5

Sequence:


               
               GGCGCGGAGCAGAGAGGCGGCGGGCGCAGCCAGCGGGTCGGGCACGGAGCGGGGGTGCAG
TCGGTTTCCCCCCGACACCCCTCCCCCTCAGGCGTGAGCCCCACCCCTCCGCCGGCCAGG
CCCACCCGACCGAACTATCCCCTGCGGCGCGAGCCCGGGGTGGCTCCGGGCGCCCCCCAG
CAGAACCCCCACCATGGGCAGCCAGAGCTCCAAGGCTCCCCGGGGCGACGTGACCACCGA
GGAGGCAGCAGGCGCTTCCCCCGCTAAGGTTAACGGACAGGAGAACGGCCACGTGAAAAG
CAATGGAGACTTATCCCCCAAAGGTGAAGGGGAGTCGCCCCCCGTGAACGAAACAGAGGA
GGCAGCCGGGGCCACTGGCGATGCCATCGAGCCAGCACCCCCTGGCCAGGGGGCTGAGGC
CAAGGGGGAGGCCCCCCCCAAGGAGACCCCCAAGAAGAAGAAGAAATTCTCTTTCAAGAA
GCCTTTCAAATTGAGTGGCCTGTCCTTCAAGAGAAATCGGAAGGAGGGTGGGGGCGATTC
GTCTGCCTCCTCGCCCACAGAGGAAGAGCAAGAGCAGGGGGAGATCGGTGCCTGCAGCGA
GGAAGGCACTGCCCAGGAAGGGAAGGCTGTTGCCACCCCTGAGAGCCAGGAGCCCCAGGC
CAAAGGGGCAGAGGCTGGTGCTGCCTCCAAGGGCGGAGACACAGAAGAAGAGGCAGGGCC
CCAGGCCACAGAGCCATCCACTCCCTTGGGGCCGGAGAGTGGCCCTACACCAGCCAGCGA
GCAGAATGAGTAGCTGGGTGGGGGCAGGTGGGTGACCTCTAAGCTGCAAAAACTGTGCTG
TCCTTGTGAGGTCACTGCCTGGACCTGGTGCCCTGGCTGCCTTCCTGTGCCCAGAAAGGA
AGGGGCTGTTGCCCCCTAGCCACGTTCCCTCTCCTCTCCCTCCTGTGGATTCTCCCATCA
TCCATCTGGTCTTCCTCCTAAGGCCAGCTGAAGGTGGTCCCTTGCAGTCTCCCCAGTTAG
GTTAGTGATGTGAAATGCTCCTGCCCCTGGCCCTCCCTCCTTCCCTGTCCCCACCCATGC
AGAAGGCAGTTGCTGGTTTTCTCCCCCAATTCTTTTCCAAGTAGGTTTTGTTTATTCCCC
AAATCCCTGAGCCAGATCTGGGGGTGCCTACACTCCCAAATCCTGAGTGTCCAGCCTTCC
CCTGTTGAGTTTCTAGTCTCTCGTGCTGTGCCTAGTGGCACCTGGGCTGGGGAGGACAGA
GCCCCTGTCTAGGTTTTTATAAATGTCTTACTCAAGTTCGAACCTCCAGCTTGTGAATCA
ACTGTCTCTTTTTTGACTTGGTAAGCAAGTATTAAGCTTTGGGGTGGGGGGAGGTCTGTA
ATGTGAAACAACTTCTTGTTGTCTTTTTTTTTTCCCCCTCCCATTGTTGTAAATAACTTT
TAATGGCCAAACCCCAGATTTGTACTTTTTTTTTTTTCTTTTCTAACTGCTAAAACCATT
CTCTTCCACCTGGTTTTATTGTAACATTTGGAAAAGGAATAAATGTCGTCCCTTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCGGAGCAGAGAGGCGGCGGGCGCAGCCAGCGGGTCGGGCACGGAGCGGGGGTGCAG
TCGGTTTCCCCCCGACACCCCTCCCCCTCAGGCGTGAGCCCCACCCCTCCGCCGGCCAGG
CCCACCCGACCGAACTATCCCCTGCGGCGCGAGCCCGGGGTGGCTCCGGGCGCCCCCCAG
CAGAACCCCCACCATGGGCAGCCAGAGCTCCAAGGCTCCCCGGGGCGACGTGACCACCGA
GGAGGCAGCAGGCGCTTCCCCCGCTAAGGTTAACGGACAGGAGAACGGCCACGTGAAAAG
CAATGGAGACTTATCCCCCAAAGGTGAAGGGGAGTCGCCCCCCGTGAACGAAACAGAGGA
GGCAGCCGGGGCCACTGGCGATGCCATCGAGCCAGCACCCCCTGGCCAGGGGGCTGAGGC
CAAGGGGGAGGCCCCCCCCAAGGAGACCCCCAAGAAGAAGAAGAAATTCTCTTTCAAGAA
GCCTTTCAAATTGAGTGGCCTGTCCTTCAAGAGAAATCGGAAGGAGGGTGGGGGCGATTC
GTCTGCCTCCTCGCCCACAGAGGAAGAGCAAGAGCAGGGGGAGATCGGTGCCTGCAGCGA
GGAAGGCACTGCCCAGGAAGGGAAGGCTGTTGCCACCCCTGAGAGCCAGGAGCCCCAGGC
CAAAGGGGCAGAGGCTGGTGCTGCCTCCAAGGGCGGAGACACAGAAGAAGAGGCAGGGCC
CCAGGCCACAGAGCCATCCACTCCCTTGGGGCCGGAGAGTGGCCCTACACCAGCCAGCGA
GCAGAATGAGTAGCTGGGTGGGGGCAGGTGGGTGACCTCTAAGCTGCAAAAACTGTGCTG
TCCTTGTGAGGTCACTGCCTGGACCTGGTGCCCTGGCTGCCTTCCTGTGCCCAGAAAGGA
AGGGGCTGTTGCCCCCTAGCCACGTTCCCTCTCCTCTCCCTCCTGTGGATTCTCCCATCA
TCCATCTGGTCTTCCTCCTAAGGCCAGCTGAAGGTGGTCCCTTGCAGTCTCCCCAGTTAG
GTTAGTGATGTGAAATGCTCCTGCCCCTGGCCCTCCCTCCTTCCCTGTCCCCACCCATGC
AGAAGGCAGTTGCTGGTTTTCTCCCCCAATTCTTTTCCAAGTAGGTTTTGTTTATTCCCC
AAATCCCTGAGCCAGATCTGGGGGTGCCTACACTCCCAAATCCTGAGTGTCCAGCCTTCC
CCTGTTGAGTTTCTAGTCTCTCGTGCTGTGCCTAGTGGCACCTGGGCTGGGGAGGACAGA
GCCCCTGTCTAGGTTTTTATAAATGTCTTACTCAAGTTCGAACCTCCAGCTTGTGAATCA
ACTGTCTCTTTTTTGACTTGGTAAGCAAGTATTAAGCTTTGGGGTGGGGGGAGGTCTGTA
ATGTGAAACAACTTCTTGTTGTCTTTTTTTTTTCCCCCTCCCATTGTTGTAAATAACTTT
TAATGGCCAAACCCCAGATTTGTACTTTTTTTTTTTTCTTTTCTAACTGCTAAAACCATT
CTCTTCCACCTGGTTTTATTGTAACATTTGGAAAAGGAATAAATGTCGTCCCTTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               MRP_RABIT

Coded protein: 1 entry(ies)

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Protein identifier


               
               MRP_RABIT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1104-1451, - strand, RNAz p=0.98679

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1104-1451, - strand, RNAz p=0.98679

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1065-1608, gnl|bosTau2|chr12 (17612333-17612871)
               

               
               1065-1608, gnl|Hg17|chr1 (32469013-32468540)
               

               
               1065-1608, gnl|Mm7|chr4 (128960148-128960615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1065-1608, gnl|bosTau2|chr12 (17612333-17612871)
               

               
               1065-1608, gnl|Hg17|chr1 (32469013-32468540)
               

               
               1065-1608, gnl|Mm7|chr4 (128960148-128960615)

Expressed library(ies): 37 entry(ies)

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Expressed library(ies): 37 entry(ies)

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               ecc (2.99091)
               

               
               eye (1.53453)
               

               
               ece (1.37583)
               

               
               elu (1.15607)
               

               
               fbs (1.05208)
               

               
               ebs (0.94641)
               

               
               hyp (0.85702)
               

               
               fhi (0.847889)
               

               
               fcc (0.791139)
               

               
               spc (0.680195)
               

               
               cst (0.560146)
               

               
               eru (0.480192)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (2.99091)
               

               
               eye (1.53453)
               

               
               ece (1.37583)
               

               
               elu (1.15607)
               

               
               fbs (1.05208)
               

               
               ebs (0.94641)
               

               
               hyp (0.85702)
               

               
               fhi (0.847889)
               

               
               fcc (0.791139)
               

               
               spc (0.680195)
               

               
               cst (0.560146)
               

               
               eru (0.480192)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cbe (0.239234)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	1065-1608, gnl\|bosTau2\|chr12 (17612333-17612871)
	1065-1608, gnl\|Hg17\|chr1 (32469013-32468540)
	1065-1608, gnl\|Mm7\|chr4 (128960148-128960615)

	ecc (2.99091)
	eye (1.53453)
	ece (1.37583)
	elu (1.15607)
	fbs (1.05208)
	ebs (0.94641)
	hyp (0.85702)
	fhi (0.847889)
	fcc (0.791139)
	spc (0.680195)
	cst (0.560146)
	eru (0.480192)
	cag (0.453583)
	amn (0.417711)
	fty (0.351679)
	med (0.348756)
	duo (0.345602)
	mcp (0.341297)
	cki (0.330469)
	nco (0.323468)
	cga (0.279096)
	fce (0.271592)
	nmm (0.265604)
	cbe (0.239234)
	eje (0.197668)
	col (0.195008)
	sto (0.179824)
	cut (0.169924)
	nje (0.16592)
	cje (0.165235)
	fco (0.157208)
	spl (0.143184)
	lnt (0.142308)
	che (0.136314)
	eep (0.122564)
	cly (0.120642)
	pgl (0.118483)