Non-Coding RNA Search

Ss1.1-Lng1-LNG010086C10.5

Sequence:


               
               CTCTCTCTCCCTCCTCGGGGGAGGAACTGCCGCGCTCCGGCTGACTCCTCCGCCGGCAGG
CGGGGCGGGGCGGGGCAGGGGGCTCCGGGCGCGCTGGGAACTGCGGGACCCGGACCTGGA
CGCCGACCGCCGCGGGGGACGCGCGGTCCCCGCCTCTGCCCGCGAACCTCCAGACAAAAC
CCTAATTCAGAAATAGGTTGTGAGCCGCAGGCCAGAAGGTTTGGCCCTCCCACTAGGGAC
CCCTGCCGCCCCCGGGACGGACGACCGAGGGCGCGATGAGCCAGGTGCTGGGGAAGCCGC
AGCCGGAGGACGAGGACGACGACGAGGAGGATGAACTGGTGGGGTTAGCGGACTACGGGG
ACGGGCCCGACTCCTCGGACGCCGAGCGGGACAGCGGGGCGGAGGAGGGAGTTCTGGACT
TCAGTGACCCCTTCAGCACAGAGGTGAAGCCCAGGATCCTGCTCATGGGGCTGAGGAGGA
GCGGCAAGTCATCCATCCAGAAAGTCGTCTTTCATAAGATGTCTCCCAACGAAACCCTCT
TCTTGGAGAGCACGAACAAGATCTGCCGGGAGGACGTTTCCAACAGCTCCTTTGTAAATT
TTCAGATTTGGGACTTCCCAGGACAGATTGACTTTTTTGACCCTACCTTTGACTATGAGA
TGATCTTCCGGGGAACAGGAGCACTGATATTTGTCATAGACTCCCAGGATGATTACATGG
AGGCCCTGGCCAGGCTCCACCTCACAGTGACCAGGGCCTACAAAGTGAACACCGACATCA
ACTTTGAGGTATTTATACACAAAGTGGATGGTCTGTCAGATGACCACAAAATTGAAACCC
AAAGAGATATTCACCAGAGGGCAAACGATGACCTTGCAGATGCTGGATTAGAAAAAATTC
ACCTCAGCTTTTATCTGACAAGCATATATGACCATTCAATATTTGAAGCTTTTAGCAAAG
TGGTTCAGAAACTGATTCCACAGCTCCCCACTCTGGAGAATTTGCTAAACATCTTTATCT
CGAATTCTGGAATTGAAAAGGCGTTTCTCTTTGATGTGGTCAGTAAAATTTATATTGCAA
CAGATAGTACCCCCGTGGATATGCAAACTTATGAGCTGTGCTGTGATATGATCGATGTGG
TTATTGACATTTCTTGTATTTATGGTCTCAAAGAAGATGGAGCAGGAACCCCCTATGATA
AGGAATCAACAGCCATTATAAAGCTGAATAATACAACAGTTCTTTATTTAAAAGAGGTGA
CAAAGTTCCTGGCTCTTGTTTGCTTTGTCAGAGAAGAAAGCTTTGAAAGAAAAGGGCTGA
TTGACTATAATTTCCATTGCTTCCGGAAGGCCATCCATGAAGTTTTTGAGGTGAGAATGA
AAGTGGTGAAATCACGAAAGGTTCAGAATCGGCTGCAGAAGAAAAAAGGAGTGACCCCCA
ACGGGACACCCAGGGTGCTGCTATAGGTGAGGTTTAAGGAGCACCTTTTGAAATCAGACC
TTTCAATGAGGCTGCTAAGCTGTGTTGCACTAAAGGAAGAGGAAGAAGGAGATTGGGACA
CGTGACATATTTCTTGTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCTCTCCCTCCTCGGGGGAGGAACTGCCGCGCTCCGGCTGACTCCTCCGCCGGCAGG
CGGGGCGGGGCGGGGCAGGGGGCTCCGGGCGCGCTGGGAACTGCGGGACCCGGACCTGGA
CGCCGACCGCCGCGGGGGACGCGCGGTCCCCGCCTCTGCCCGCGAACCTCCAGACAAAAC
CCTAATTCAGAAATAGGTTGTGAGCCGCAGGCCAGAAGGTTTGGCCCTCCCACTAGGGAC
CCCTGCCGCCCCCGGGACGGACGACCGAGGGCGCGATGAGCCAGGTGCTGGGGAAGCCGC
AGCCGGAGGACGAGGACGACGACGAGGAGGATGAACTGGTGGGGTTAGCGGACTACGGGG
ACGGGCCCGACTCCTCGGACGCCGAGCGGGACAGCGGGGCGGAGGAGGGAGTTCTGGACT
TCAGTGACCCCTTCAGCACAGAGGTGAAGCCCAGGATCCTGCTCATGGGGCTGAGGAGGA
GCGGCAAGTCATCCATCCAGAAAGTCGTCTTTCATAAGATGTCTCCCAACGAAACCCTCT
TCTTGGAGAGCACGAACAAGATCTGCCGGGAGGACGTTTCCAACAGCTCCTTTGTAAATT
TTCAGATTTGGGACTTCCCAGGACAGATTGACTTTTTTGACCCTACCTTTGACTATGAGA
TGATCTTCCGGGGAACAGGAGCACTGATATTTGTCATAGACTCCCAGGATGATTACATGG
AGGCCCTGGCCAGGCTCCACCTCACAGTGACCAGGGCCTACAAAGTGAACACCGACATCA
ACTTTGAGGTATTTATACACAAAGTGGATGGTCTGTCAGATGACCACAAAATTGAAACCC
AAAGAGATATTCACCAGAGGGCAAACGATGACCTTGCAGATGCTGGATTAGAAAAAATTC
ACCTCAGCTTTTATCTGACAAGCATATATGACCATTCAATATTTGAAGCTTTTAGCAAAG
TGGTTCAGAAACTGATTCCACAGCTCCCCACTCTGGAGAATTTGCTAAACATCTTTATCT
CGAATTCTGGAATTGAAAAGGCGTTTCTCTTTGATGTGGTCAGTAAAATTTATATTGCAA
CAGATAGTACCCCCGTGGATATGCAAACTTATGAGCTGTGCTGTGATATGATCGATGTGG
TTATTGACATTTCTTGTATTTATGGTCTCAAAGAAGATGGAGCAGGAACCCCCTATGATA
AGGAATCAACAGCCATTATAAAGCTGAATAATACAACAGTTCTTTATTTAAAAGAGGTGA
CAAAGTTCCTGGCTCTTGTTTGCTTTGTCAGAGAAGAAAGCTTTGAAAGAAAAGGGCTGA
TTGACTATAATTTCCATTGCTTCCGGAAGGCCATCCATGAAGTTTTTGAGGTGAGAATGA
AAGTGGTGAAATCACGAAAGGTTCAGAATCGGCTGCAGAAGAAAAAAGGAGTGACCCCCA
ACGGGACACCCAGGGTGCTGCTATAGGTGAGGTTTAAGGAGCACCTTTTGAAATCAGACC
TTTCAATGAGGCTGCTAAGCTGTGTTGCACTAAAGGAAGAGGAAGAAGGAGATTGGGACA
CGTGACATATTTCTTGTAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627056|ref|XP_518637.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627056|ref|XP_518637.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               902-1021, - strand, RNAz p=0.990487

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               902-1021, - strand, RNAz p=0.990487

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               112-1584, gnl|bosTau2|chr9 (33842926-33841480)
               


               
               584-784, gnl|bosTau2|chr23 (2035637-2035452)
               


               
               816-1380, gnl|bosTau2|chr23 (20544797-20544234)
               

               
               816-1380, gnl|Hg17|chr1 (38990476-38974404)
               

               
               816-1380, gnl|Mm7|chr4 (123365793-123380249)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-1584, gnl|bosTau2|chr9 (33842926-33841480)
               


               
               584-784, gnl|bosTau2|chr23 (2035637-2035452)
               


               
               816-1380, gnl|bosTau2|chr23 (20544797-20544234)
               

               
               816-1380, gnl|Hg17|chr1 (38990476-38974404)
               

               
               816-1380, gnl|Mm7|chr4 (123365793-123380249)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               sag (0.730861)
               

               
               ldo (0.485013)
               

               
               tes (0.415628)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.730861)
               

               
               ldo (0.485013)
               

               
               tes (0.415628)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	112-1584, gnl\|bosTau2\|chr9 (33842926-33841480)

	584-784, gnl\|bosTau2\|chr23 (2035637-2035452)

	816-1380, gnl\|bosTau2\|chr23 (20544797-20544234)
	816-1380, gnl\|Hg17\|chr1 (38990476-38974404)
	816-1380, gnl\|Mm7\|chr4 (123365793-123380249)

	sag (0.730861)
	ldo (0.485013)
	tes (0.415628)
	sme (0.305437)
	cte (0.29274)
	ste (0.270416)
	cbe (0.239234)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	ebs (0.118301)
	spc (0.113366)