Ss1.1-Lng1-LNG010086E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGCTGAAGGGAGGGACCCTCAGATAGTTTTGGTGGCCTATTCTGTTCACTTGGAGTT GACATACGGATGTGTTGGAAGGGAAAATAAATCATCATATATTCCCCTTTCATACTGTTT AAATAACTGGAAGAAGGAGCTTTAAGAAAAAGACAAAAACCAAAATGACGACTGCTCAAT TTGATTGTCAATACTGCACGGCATCACTTCTTGGGAAGAAGTATGTACTAAAGGATGACA ATCCATACTGTGTTTCTTGTTATGATCGCATCTTTTCTAACTATTGTGAGGAGTGCAAAG AACCAATTGAATCAGATTCCAAGGATCTTTGTTACAAAGGCCGTCACTGGCATGAAGGAT GCTTCAATTGTGCCAAATGCAATCACTCCTTGGTGGAAAAACCTTTTGCTGCCAAGGATG AGCGCCTGCTGTGCTCAGAATGCTATTCTAATGAGTGCTCCTCCAAGTGCTTCCACTGCA AGAGGACCATCATGCCAGGTTCCCGCAAAATGGAATTTAAGGGAAACTACTGGCACGAAA CCTGCTTTGTGTGTGAGCACTGCCGACAACCAATAGGAACTAAACCATTGATTTCCAAAG AGAATGGCAATTATTGTGTGCCCTGTTTTGAGAAGGAGTTTGCTCACTACTGCAGCTTTT GTAAGAAGGTGATAACTTCAGGTGGGATAACATTTCATGACCAGCCATGGCATAAAGAGT GTTTTCTGTGCAGTGGCTGTAGGAAGGAGCTCTGTGAAGAAGAGTTTATGTCCAAAGATG ATTATCCATTCTGCTTGGACTGCTACAACCATCTTTATGCCAAAAAGTGCTCTGCCTGCA CCAAACCTATTACTGGTCTCAGAGGCGCCAAGTTTATCTGCTTTCAAGACCGCCAGTGGC ACAGTGAGTGCTTTAACTGCGGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGCTGAAGGGAGGGACCCTCAGATAGTTTTGGTGGCCTATTCTGTTCACTTGGAGTT GACATACGGATGTGTTGGAAGGGAAAATAAATCATCATATATTCCCCTTTCATACTGTTT AAATAACTGGAAGAAGGAGCTTTAAGAAAAAGACAAAAACCAAAATGACGACTGCTCAAT TTGATTGTCAATACTGCACGGCATCACTTCTTGGGAAGAAGTATGTACTAAAGGATGACA ATCCATACTGTGTTTCTTGTTATGATCGCATCTTTTCTAACTATTGTGAGGAGTGCAAAG AACCAATTGAATCAGATTCCAAGGATCTTTGTTACAAAGGCCGTCACTGGCATGAAGGAT GCTTCAATTGTGCCAAATGCAATCACTCCTTGGTGGAAAAACCTTTTGCTGCCAAGGATG AGCGCCTGCTGTGCTCAGAATGCTATTCTAATGAGTGCTCCTCCAAGTGCTTCCACTGCA AGAGGACCATCATGCCAGGTTCCCGCAAAATGGAATTTAAGGGAAACTACTGGCACGAAA CCTGCTTTGTGTGTGAGCACTGCCGACAACCAATAGGAACTAAACCATTGATTTCCAAAG AGAATGGCAATTATTGTGTGCCCTGTTTTGAGAAGGAGTTTGCTCACTACTGCAGCTTTT GTAAGAAGGTGATAACTTCAGGTGGGATAACATTTCATGACCAGCCATGGCATAAAGAGT GTTTTCTGTGCAGTGGCTGTAGGAAGGAGCTCTGTGAAGAAGAGTTTATGTCCAAAGATG ATTATCCATTCTGCTTGGACTGCTACAACCATCTTTATGCCAAAAAGTGCTCTGCCTGCA CCAAACCTATTACTGGTCTCAGAGGCGCCAAGTTTATCTGCTTTCAAGACCGCCAGTGGC ACAGTGAGTGCTTTAACTGCGGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 706-825, + strand, RNAz p=0.99513 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 706-825, + strand, RNAz p=0.99513 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 11-152, gnl|bosTau2|chr9 (29294959-29294821) | |
| 11-152, gnl|canFam2|chr12 (58030084-58030971) | |
| 11-152, gnl|dasNov1|scaffold_25250 (597-1448) | |
| 11-152, gnl|echTel1|scaffold_278262 (1341-509) | |
| 11-152, gnl|hg17|chr6 (97117499-97118360) | |
| 11-152, gnl|Hg17|chr6 (97117815-97117953) | |
| 11-152, gnl|loxAfr1|scaffold_831 (166363-165488) | |
| 11-152, gnl|mm7|chr4 (25312368-25311547) | |
| 11-152, gnl|Mm7|chr4 (25312074-25311946) | |
| 11-152, gnl|monDom2|scaffold_0 (128608544-128607660) | |
| 11-152, gnl|oryCun1|scaffold_172974 (99546-98693) | |
| 11-152, gnl|panTro1|chr5 (99079818-99080679) | |
| 11-152, gnl|rheMac2|chr4 (92496324-92497188) | |
| 11-152, gnl|rn3|chr5 (40301467-40300649) | |
| 322-500, gnl|bosTau2|chr11 (6823364-6823186) | |
| 322-500, gnl|canFam2|chr10 (41174583-41174381) | |
| 322-500, gnl|danRer3|chr22 (956698-956505) | |
| 322-500, gnl|dasNov1|scaffold_1472 (126029-125841) | |
| 322-500, gnl|echTel1|scaffold_309909 (68945-69131) | |
| 322-500, gnl|fr1|chrUn (88912751-88912551) | |
| 322-500, gnl|galGal2|chr1 (128261063-128261266) | |
| 322-500, gnl|hg17|chr2 (105448530-105448732) | |
| 322-500, gnl|Hg17|chr2 (105448710-105448532) | |
| 322-500, gnl|loxAfr1|scaffold_4291 (60744-60947) | |
| 322-500, gnl|mm7|chr1 (43382081-43382281) | |
| 322-500, gnl|Mm7|chr1 (43382261-43382083) | |
| 322-500, gnl|monDom2|scaffold_11 (24253542-24253746) | |
| 322-500, gnl|oryCun1|scaffold_172974 (52206-52398) | |
| 322-500, gnl|panTro1|chr12 (108413175-108413377) | |
| 322-500, gnl|rheMac2|chr13 (105261671-105261873) | |
| 322-500, gnl|rn3|chr9 (42338683-42338881) | |
| 322-500, gnl|tetNig1|chr2 (9025837-9026018) | |
| 322-500, gnl|xenTro1|scaffold_343 (840232-840050) | |
| 667-857, gnl|bosTau2|chr9 (29250537-29250347) | |
| 667-857, gnl|Hg17|chr6 (97165167-97165357) | |
| 667-857, gnl|Mm7|chr4 (25277063-25276873) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-152, gnl|bosTau2|chr9 (29294959-29294821) | |
| 11-152, gnl|canFam2|chr12 (58030084-58030971) | |
| 11-152, gnl|dasNov1|scaffold_25250 (597-1448) | |
| 11-152, gnl|echTel1|scaffold_278262 (1341-509) | |
| 11-152, gnl|hg17|chr6 (97117499-97118360) | |
| 11-152, gnl|Hg17|chr6 (97117815-97117953) | |
| 11-152, gnl|loxAfr1|scaffold_831 (166363-165488) | |
| 11-152, gnl|mm7|chr4 (25312368-25311547) | |
| 11-152, gnl|Mm7|chr4 (25312074-25311946) | |
| 11-152, gnl|monDom2|scaffold_0 (128608544-128607660) | |
| 11-152, gnl|oryCun1|scaffold_172974 (99546-98693) | |
| 11-152, gnl|panTro1|chr5 (99079818-99080679) | |
| 11-152, gnl|rheMac2|chr4 (92496324-92497188) | |
| 11-152, gnl|rn3|chr5 (40301467-40300649) | |
| 322-500, gnl|bosTau2|chr11 (6823364-6823186) | |
| 322-500, gnl|canFam2|chr10 (41174583-41174381) | |
| 322-500, gnl|danRer3|chr22 (956698-956505) | |
| 322-500, gnl|dasNov1|scaffold_1472 (126029-125841) | |
| 322-500, gnl|echTel1|scaffold_309909 (68945-69131) | |
| 322-500, gnl|fr1|chrUn (88912751-88912551) | |
| 322-500, gnl|galGal2|chr1 (128261063-128261266) | |
| 322-500, gnl|hg17|chr2 (105448530-105448732) | |
| 322-500, gnl|Hg17|chr2 (105448710-105448532) | |
| 322-500, gnl|loxAfr1|scaffold_4291 (60744-60947) | |
| 322-500, gnl|mm7|chr1 (43382081-43382281) | |
| 322-500, gnl|Mm7|chr1 (43382261-43382083) | |
| 322-500, gnl|monDom2|scaffold_11 (24253542-24253746) | |
| 322-500, gnl|oryCun1|scaffold_172974 (52206-52398) | |
| 322-500, gnl|panTro1|chr12 (108413175-108413377) | |
| 322-500, gnl|rheMac2|chr13 (105261671-105261873) | |
| 322-500, gnl|rn3|chr9 (42338683-42338881) | |
| 322-500, gnl|tetNig1|chr2 (9025837-9026018) | |
| 322-500, gnl|xenTro1|scaffold_343 (840232-840050) | |
| 667-857, gnl|bosTau2|chr9 (29250537-29250347) | |
| 667-857, gnl|Hg17|chr6 (97165167-97165357) | |
| 667-857, gnl|Mm7|chr4 (25277063-25276873) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| sin (0.174948) |