Non-Coding RNA Search

Ss1.1-Lng1-LNG010088C04.5

Sequence:


               
               GAAAACTGAAGCTGCCAAGAAAGAGTATCTAAAGGCTCTGGCTGCTTATAAAGATAATCA
GGAGTGTCAGGCCACTGTAGAAACAGTGGAATTGGATCCAGCACCACCATCGCAGACTCC
TTCTCCACCTCCTGTGGCTACAACTGCTGACCCAGCATCTCCAGCACCAGCCACAACAGA
GCCTCCGGCCCTGTCTCCTTCCATTGTTGTTAATTCCACTCTTTCATCCTATGTGACAAA
CCAAGCATCTTCTGGAGCTGGGGGTCAGCCCAATATTACCAAGTTGATTATTACCAAACA
GATGTTGCCTTCTTCTATTACTATGTCTCAAGGAGGGATGGTTACCGTTATCCCAGCAAC
AGTGGTGACCTCCCGGGGGCTCCAACTAGGCCAAACCAGTACAGCTACTATCCAGCCTAG
TCAACAAGCCCAGATTGTCACTCGGTCAGTGTTGCAGGCAGCAGCAGCAGCAGCAGCTTC
TATGCAACTGCCTCCACCCCGACTACAACCCCCTCCATTGCAACAGATGCCTCAGCCCCC
CACTCAGCAACAAGTGACCATTCTGCAGCAGCCTCCCCCACTCCAGGCCATGCAACAGCC
TCCACCACAGAAATTTCGAATCAATTTACAGCAACAGCCACCTCCGCTGCAGGTCAAGAT
TGTGCCTCCACCCACTCTGAAAATGCAGACTACCTTAGTTCCACCACCTGTAGAAAATAG
TCCTGAGCAGCCTATGAACAGCAGCCCTGAGGCCCATACTGTGGAGGAAACCTCTCCTGA
GACAATCTGTGAGATGATCACAGATGTAGTTCCTGAGGTTGAGTCTCCTCCCCAAATGGA
TGTTGAATTGGTGGATGAGTCTCCTGTGACGCTCTCACCCCAGCCTCGATGTGTGAGGTC
CGGCTGTGAGAACCCTCCTGTTGTGAGTAAAGACTGGGACAACGAGTACTGCAGCAATGA
GTGCGTGGTGAAGCACTGCAGGGATGTCTTCTTGGCCTGGGTAGCCTCTAGAAATTCAAA
CACAGTGGTGTTTGTGAAATAGTCCTTCCTGTTCTTCAAGCCAGTGAAGACTTTATCTGC
TTGGAACATGTCCACCGAGCTTGTTTTTTAAAAGACAAACTAGGTTTCTGGTAGTGCCTG
ATCTCAACCCATGATGGTCCTTGCTGCCCTTGATGCTTCTCCTCTTTTATCGCTCTTCAT
CAGGGTCCAGGCTATGGAGCAGGGCCATTTAGTTTGCTATAACCTGCAACTGCTTTTTAC
TTTCAAGAACAAGCAGAGATAAACAGTAATAACAGAGGAAAAGCTGGAAGGAATATGGAC
AAACAGAACATAGGGGTGTTGATTGAGGGTGGTGGGGATTATGTGAGGAAACGTTGTTAT
AATTATCATAGGACTTGCCTAAAACATTATTAAAATGGTAGGTGAGTGCTCAGTTTTGGG
CCTAGGAGAAAATACCACTGTGTGCATCCATCTTAAAAGGGCTAAAAGGTTGTATTAAAG
GTTACCTCTTAAACAGGGAACTATTACTATCACTTCTATACATTACTTTCAGGACAAAGG
TTTTCAACATAGTAAGCACACTGGACTATAGAGAAAAATAACATCACCTAGAAGATGTAT
TTCTGTAGTCAACATCCTTCCTTATCTCAGTTATCTCAGTTTATGAGTGTAAAAGGCAGA
ACTCTGCATCCTTGATTTAAGAGGTTTCACCAACGTCTAAAGTTGTGTTCACTTTGTGTC
TGATGAAGTATCTTAAAAGATAGGCCAGAAATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAACTGAAGCTGCCAAGAAAGAGTATCTAAAGGCTCTGGCTGCTTATAAAGATAATCA
GGAGTGTCAGGCCACTGTAGAAACAGTGGAATTGGATCCAGCACCACCATCGCAGACTCC
TTCTCCACCTCCTGTGGCTACAACTGCTGACCCAGCATCTCCAGCACCAGCCACAACAGA
GCCTCCGGCCCTGTCTCCTTCCATTGTTGTTAATTCCACTCTTTCATCCTATGTGACAAA
CCAAGCATCTTCTGGAGCTGGGGGTCAGCCCAATATTACCAAGTTGATTATTACCAAACA
GATGTTGCCTTCTTCTATTACTATGTCTCAAGGAGGGATGGTTACCGTTATCCCAGCAAC
AGTGGTGACCTCCCGGGGGCTCCAACTAGGCCAAACCAGTACAGCTACTATCCAGCCTAG
TCAACAAGCCCAGATTGTCACTCGGTCAGTGTTGCAGGCAGCAGCAGCAGCAGCAGCTTC
TATGCAACTGCCTCCACCCCGACTACAACCCCCTCCATTGCAACAGATGCCTCAGCCCCC
CACTCAGCAACAAGTGACCATTCTGCAGCAGCCTCCCCCACTCCAGGCCATGCAACAGCC
TCCACCACAGAAATTTCGAATCAATTTACAGCAACAGCCACCTCCGCTGCAGGTCAAGAT
TGTGCCTCCACCCACTCTGAAAATGCAGACTACCTTAGTTCCACCACCTGTAGAAAATAG
TCCTGAGCAGCCTATGAACAGCAGCCCTGAGGCCCATACTGTGGAGGAAACCTCTCCTGA
GACAATCTGTGAGATGATCACAGATGTAGTTCCTGAGGTTGAGTCTCCTCCCCAAATGGA
TGTTGAATTGGTGGATGAGTCTCCTGTGACGCTCTCACCCCAGCCTCGATGTGTGAGGTC
CGGCTGTGAGAACCCTCCTGTTGTGAGTAAAGACTGGGACAACGAGTACTGCAGCAATGA
GTGCGTGGTGAAGCACTGCAGGGATGTCTTCTTGGCCTGGGTAGCCTCTAGAAATTCAAA
CACAGTGGTGTTTGTGAAATAGTCCTTCCTGTTCTTCAAGCCAGTGAAGACTTTATCTGC
TTGGAACATGTCCACCGAGCTTGTTTTTTAAAAGACAAACTAGGTTTCTGGTAGTGCCTG
ATCTCAACCCATGATGGTCCTTGCTGCCCTTGATGCTTCTCCTCTTTTATCGCTCTTCAT
CAGGGTCCAGGCTATGGAGCAGGGCCATTTAGTTTGCTATAACCTGCAACTGCTTTTTAC
TTTCAAGAACAAGCAGAGATAAACAGTAATAACAGAGGAAAAGCTGGAAGGAATATGGAC
AAACAGAACATAGGGGTGTTGATTGAGGGTGGTGGGGATTATGTGAGGAAACGTTGTTAT
AATTATCATAGGACTTGCCTAAAACATTATTAAAATGGTAGGTGAGTGCTCAGTTTTGGG
CCTAGGAGAAAATACCACTGTGTGCATCCATCTTAAAAGGGCTAAAAGGTTGTATTAAAG
GTTACCTCTTAAACAGGGAACTATTACTATCACTTCTATACATTACTTTCAGGACAAAGG
TTTTCAACATAGTAAGCACACTGGACTATAGAGAAAAATAACATCACCTAGAAGATGTAT
TTCTGTAGTCAACATCCTTCCTTATCTCAGTTATCTCAGTTTATGAGTGTAAAAGGCAGA
ACTCTGCATCCTTGATTTAAGAGGTTTCACCAACGTCTAAAGTTGTGTTCACTTTGTGTC
TGATGAAGTATCTTAAAAGATAGGCCAGAAATGTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55733008|emb|CAH93190.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55733008|emb|CAH93190.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               69-267, - strand, RNAz p=0.97784
               

               
               388-501, - strand, RNAz p=0.717751
               

               
               662-781, - strand, RNAz p=0.657426

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-267, - strand, RNAz p=0.97784
               

               
               388-501, - strand, RNAz p=0.717751
               

               
               662-781, - strand, RNAz p=0.657426

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               69-827, gnl|bosTau2|chr10 (16046484-16047238)
               

               
               69-827, gnl|Hg17|chr14 (21030505-21031265)
               

               
               69-827, gnl|Mm7|chr14 (47625153-47625908)
               


               
               980-1776, gnl|bosTau2|chr10 (16049066-16049871)
               

               
               980-1776, gnl|Hg17|chr14 (21034542-21035296)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-827, gnl|bosTau2|chr10 (16046484-16047238)
               

               
               69-827, gnl|Hg17|chr14 (21030505-21031265)
               

               
               69-827, gnl|Mm7|chr14 (47625153-47625908)
               


               
               980-1776, gnl|bosTau2|chr10 (16049066-16049871)
               

               
               980-1776, gnl|Hg17|chr14 (21034542-21035296)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               fhi (0.339155)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	69-267, - strand, RNAz p=0.97784
	388-501, - strand, RNAz p=0.717751
	662-781, - strand, RNAz p=0.657426

	69-827, gnl\|bosTau2\|chr10 (16046484-16047238)
	69-827, gnl\|Hg17\|chr14 (21030505-21031265)
	69-827, gnl\|Mm7\|chr14 (47625153-47625908)

	980-1776, gnl\|bosTau2\|chr10 (16049066-16049871)
	980-1776, gnl\|Hg17\|chr14 (21034542-21035296)

	fhi (0.339155)
	tes (0.207814)
	fli (0.202881)
	jej (0.197844)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	ctl (0.153069)
	cli (0.152812)
	cag (0.151194)
	hyp (0.142837)
	nmm (0.132802)
	sug (0.127291)
	cly (0.120642)
	pgl (0.118483)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)