Non-Coding RNA Search

Ss1.1-Lng1-LNG010088H01.5

Sequence:


               
               AATTCCAGGGTCATACTTTCAAAGTTTATCAGTGAAGTAGTGATTAATCATGGGGAGTGT
CAAAGCTATTGAACTTTTTGTATAAAAAAAAAAACTTTACAAGGTGCCAAGATGTACAGA
CAATTTGTTACTTTTTTTTTTCCAAAGAAAAGCGTATATTAGGGAGAATAGTCCCTTGTA
TCAGGCAAATGCACTGTCTTATCAGGAATGAGGCTCCATCTTCCTTGTCCTTAGAGTCTG
TCTTTGTAAGACAAGCGAACGCTGTGGCGTTGAACCGGAAATAAAAGGATGGGAAGAGTG
ACCGCCAACTCTGCCACCTCCGGACAGCTCTGACCTGATTCCCCAAGTTCCATCAGACCT
AGAAAAGAACACCTTGGATTCTTAATCCAAAACTTGATGTCAATCACTAGCTATTTTATC
ATGAAAAAAAAAAAAGTTAAATATCTCCTCTCCTTTCCACATTCCAGCTTGAGCTCCGTT
GCCAAGGGTACAAAGAAGAACATGCTTGTAAGGATTTTGAATCTTTTGGGGACCTTTTGG
TTAATGGTAGACCCTCTGGATATTTTGGATGTTTTTGAGAGTCGGTTTCGCTTTTTTATC
CTGAGAATGAGACTTACAGTTCTAAAGGCATGTTGGGGGCCCAGTGCAGTGCTCACACTC
TGCTACCAAGAAGCCTGGATGGAGATGGTACAGCCCGGACTGTGAGCATGGTGCTTCATG
GAGATGTGCTGCCAGTAACAAGATTTTTGTTTTGTTTTGTTCTGTTTTGATAAGGCATAA
AAGAAACTCATTCCTTGACATCAACTGTAATTCCATCATTCCGTGTCTGTGGATACAGAC
AATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCAGGGTCATACTTTCAAAGTTTATCAGTGAAGTAGTGATTAATCATGGGGAGTGT
CAAAGCTATTGAACTTTTTGTATAAAAAAAAAAACTTTACAAGGTGCCAAGATGTACAGA
CAATTTGTTACTTTTTTTTTTCCAAAGAAAAGCGTATATTAGGGAGAATAGTCCCTTGTA
TCAGGCAAATGCACTGTCTTATCAGGAATGAGGCTCCATCTTCCTTGTCCTTAGAGTCTG
TCTTTGTAAGACAAGCGAACGCTGTGGCGTTGAACCGGAAATAAAAGGATGGGAAGAGTG
ACCGCCAACTCTGCCACCTCCGGACAGCTCTGACCTGATTCCCCAAGTTCCATCAGACCT
AGAAAAGAACACCTTGGATTCTTAATCCAAAACTTGATGTCAATCACTAGCTATTTTATC
ATGAAAAAAAAAAAAGTTAAATATCTCCTCTCCTTTCCACATTCCAGCTTGAGCTCCGTT
GCCAAGGGTACAAAGAAGAACATGCTTGTAAGGATTTTGAATCTTTTGGGGACCTTTTGG
TTAATGGTAGACCCTCTGGATATTTTGGATGTTTTTGAGAGTCGGTTTCGCTTTTTTATC
CTGAGAATGAGACTTACAGTTCTAAAGGCATGTTGGGGGCCCAGTGCAGTGCTCACACTC
TGCTACCAAGAAGCCTGGATGGAGATGGTACAGCCCGGACTGTGAGCATGGTGCTTCATG
GAGATGTGCTGCCAGTAACAAGATTTTTGTTTTGTTTTGTTCTGTTTTGATAAGGCATAA
AAGAAACTCATTCCTTGACATCAACTGTAATTCCATCATTCCGTGTCTGTGGATACAGAC
AATAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-226, - strand, RNAz p=0.737783

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-226, - strand, RNAz p=0.737783

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr22 (24795714-24796589)
               

               
               1-852, gnl|Hg17|chr3 (71087507-71086633)
               

               
               1-852, gnl|Mm7|chr6 (99014383-99013503)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr22 (24795714-24796589)
               

               
               1-852, gnl|Hg17|chr3 (71087507-71086633)
               

               
               1-852, gnl|Mm7|chr6 (99014383-99013503)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               gul (0.355177)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               lyg (0.133103)
               

               
               spc (0.113366)

	1-852, gnl\|bosTau2\|chr22 (24795714-24796589)
	1-852, gnl\|Hg17\|chr3 (71087507-71086633)
	1-852, gnl\|Mm7\|chr6 (99014383-99013503)

	gul (0.355177)
	aor (0.195274)
	sto (0.179824)
	rec (0.17307)
	tbr (0.154178)
	lyg (0.133103)
	spc (0.113366)