Non-Coding RNA Search

Ss1.1-Lng1-LNG010089C11.5

Sequence:


               
               AATTCAGAGGCTGCTGCCTGCCTAGGAGGTTGTAGAAAGCTCTGTAGGTTCTCTCTGTGT
GTCCTACAGGGCTCCTCGGGCCAGGTCCCTGTCTGATGGCTTTTATGAAAAAATATCTCC
TCCCTATTCTGGGGATCTTCTTGGCCTACTACTACTATTCCGCAAATGAGGAATTCAGAC
CAGAGATGCTTCGAGGAAAGAAAGTGATTGTCACAGGGGCCAGCAAGGGGATCGGAAGAG
AGATGGCCTATCATCTGGCGAGGATGGGAGCCCATGTGGTGGTGACAGCGAGGTCAGAAG
AAACTCTCAAGAAGGTGGTGTCCCACTGCCTGGAGCTTGGCGCGTCTTCAGCACACTACG
TTGCTGGCACCATGGAGGACATGACCTTCGCAGAGCAATTTGTTGCCAAAGCTGGAAAGC
TCCTGGGGGGCCTGGACATGCTCATTCTCAACCACATCACCCACGCCTCCATGACTCCGT
TTAGTGACGACATCCACCTCGTGCGCAGAAGCATGGAGGTCAACTTCCTCAGCTACGTGG
TCCTCAGCGTGGCCGCCTTGCCCATGCTGAAGCAGAGCAACGGGAGCATCGTGGTGGTCT
CGTCCCAGGCGGGGAAAATGGCGAATCCACTTGTTGCTCCCTATTCTGCAAGCAAGTTTG
CTCTGGACGGGTTCTTCTCCTCTATCAGGAAAGAATATTCAGTGACCAAGGTCAACGTGT
CAATCACGCTCTGTATCCTCGGTCTCATAGACACAGACACGGCCATGACAGCAGTGGCTG
GGATACTCAACGTACAACCATCTCCAAAGGAAGAATGCGCCCTGGAAATTATCAAAGGGG
CAGCTTTGCGCCAAGAGGAAGTGTATTATGACAGCTCAATCTTGACTTCTCTCCTGCTGG
GAAATCCAGGGAGGAAGATCCTGGAATTTCTGTCCTTACGACATTATAATATGGAAAGGT
TTACAAACAACTAGGCCCTTGTTTAGGGCTGGGCATGATAAGGGGCTTGCAGGTATTCTG
CCTGATATTTATCTGAGCTCCATGATGAAGGCATCTCCCCAGAGAGATAAATGAGTGTCC
CCACGGGGCTGCAAGTCACACATCGCATCTCACAAGCTGAAGTTCTTCTAACACTTGTAC
AGTGGAAACGCAATTATAATGAATGTCATGAACCCGCAGTTTTGAAATTCATAGTAAGTG
TAGGTATAATTACAAGGTAGTTACGTCACATTACCTCACGGGTAATGATGTTATGAGGCT
TAACCAATACTAACGATAGTAAAGGTCACACAGACCTTATCAATCCACACCTGGTGGCTG
TAACTTCGGTTCATTCAGTACAGTTCCATTAAAATCGTAACCTGTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCAGAGGCTGCTGCCTGCCTAGGAGGTTGTAGAAAGCTCTGTAGGTTCTCTCTGTGT
GTCCTACAGGGCTCCTCGGGCCAGGTCCCTGTCTGATGGCTTTTATGAAAAAATATCTCC
TCCCTATTCTGGGGATCTTCTTGGCCTACTACTACTATTCCGCAAATGAGGAATTCAGAC
CAGAGATGCTTCGAGGAAAGAAAGTGATTGTCACAGGGGCCAGCAAGGGGATCGGAAGAG
AGATGGCCTATCATCTGGCGAGGATGGGAGCCCATGTGGTGGTGACAGCGAGGTCAGAAG
AAACTCTCAAGAAGGTGGTGTCCCACTGCCTGGAGCTTGGCGCGTCTTCAGCACACTACG
TTGCTGGCACCATGGAGGACATGACCTTCGCAGAGCAATTTGTTGCCAAAGCTGGAAAGC
TCCTGGGGGGCCTGGACATGCTCATTCTCAACCACATCACCCACGCCTCCATGACTCCGT
TTAGTGACGACATCCACCTCGTGCGCAGAAGCATGGAGGTCAACTTCCTCAGCTACGTGG
TCCTCAGCGTGGCCGCCTTGCCCATGCTGAAGCAGAGCAACGGGAGCATCGTGGTGGTCT
CGTCCCAGGCGGGGAAAATGGCGAATCCACTTGTTGCTCCCTATTCTGCAAGCAAGTTTG
CTCTGGACGGGTTCTTCTCCTCTATCAGGAAAGAATATTCAGTGACCAAGGTCAACGTGT
CAATCACGCTCTGTATCCTCGGTCTCATAGACACAGACACGGCCATGACAGCAGTGGCTG
GGATACTCAACGTACAACCATCTCCAAAGGAAGAATGCGCCCTGGAAATTATCAAAGGGG
CAGCTTTGCGCCAAGAGGAAGTGTATTATGACAGCTCAATCTTGACTTCTCTCCTGCTGG
GAAATCCAGGGAGGAAGATCCTGGAATTTCTGTCCTTACGACATTATAATATGGAAAGGT
TTACAAACAACTAGGCCCTTGTTTAGGGCTGGGCATGATAAGGGGCTTGCAGGTATTCTG
CCTGATATTTATCTGAGCTCCATGATGAAGGCATCTCCCCAGAGAGATAAATGAGTGTCC
CCACGGGGCTGCAAGTCACACATCGCATCTCACAAGCTGAAGTTCTTCTAACACTTGTAC
AGTGGAAACGCAATTATAATGAATGTCATGAACCCGCAGTTTTGAAATTCATAGTAAGTG
TAGGTATAATTACAAGGTAGTTACGTCACATTACCTCACGGGTAATGATGTTATGAGGCT
TAACCAATACTAACGATAGTAAAGGTCACACAGACCTTATCAATCCACACCTGGTGGCTG
TAACTTCGGTTCATTCAGTACAGTTCCATTAAAATCGTAACCTGTAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15721931|gb|AAL06292.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15721931|gb|AAL06292.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, - strand, RNAz p=0.518731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.518731

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-183, gnl|bosTau2|chr16 (51090240-51090422)
               

               
               1-183, gnl|Hg17|chr1 (206266588-206266770)
               

               
               1-183, gnl|Mm7|chr1 (192795009-192794827)
               


               
               426-615, gnl|bosTau2|chr16 (51092255-51092445)
               

               
               426-615, gnl|Hg17|chr1 (206268682-206268872)
               

               
               426-615, gnl|Mm7|chr1 (192793069-192792879)
               


               
               753-1366, gnl|bosTau2|chr16 (50770488-50771101)
               

               
               753-1366, gnl|Hg17|chr1 (206296040-206296660)
               

               
               753-1366, gnl|Mm7|chr1 (192774851-192774259)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-183, gnl|bosTau2|chr16 (51090240-51090422)
               

               
               1-183, gnl|Hg17|chr1 (206266588-206266770)
               

               
               1-183, gnl|Mm7|chr1 (192795009-192794827)
               


               
               426-615, gnl|bosTau2|chr16 (51092255-51092445)
               

               
               426-615, gnl|Hg17|chr1 (206268682-206268872)
               

               
               426-615, gnl|Mm7|chr1 (192793069-192792879)
               


               
               753-1366, gnl|bosTau2|chr16 (50770488-50771101)
               

               
               753-1366, gnl|Hg17|chr1 (206296040-206296660)
               

               
               753-1366, gnl|Mm7|chr1 (192774851-192774259)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               lun (1.05342)
               

               
               cli (0.764059)
               

               
               pro (0.512033)
               

               
               ret (0.3862)
               

               
               spc (0.340097)
               

               
               cty (0.31224)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (1.05342)
               

               
               cli (0.764059)
               

               
               pro (0.512033)
               

               
               ret (0.3862)
               

               
               spc (0.340097)
               

               
               cty (0.31224)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-183, gnl\|bosTau2\|chr16 (51090240-51090422)
	1-183, gnl\|Hg17\|chr1 (206266588-206266770)
	1-183, gnl\|Mm7\|chr1 (192795009-192794827)

	426-615, gnl\|bosTau2\|chr16 (51092255-51092445)
	426-615, gnl\|Hg17\|chr1 (206268682-206268872)
	426-615, gnl\|Mm7\|chr1 (192793069-192792879)

	753-1366, gnl\|bosTau2\|chr16 (50770488-50771101)
	753-1366, gnl\|Hg17\|chr1 (206296040-206296660)
	753-1366, gnl\|Mm7\|chr1 (192774851-192774259)

	lun (1.05342)
	cli (0.764059)
	pro (0.512033)
	ret (0.3862)
	spc (0.340097)
	cty (0.31224)
	ste (0.270416)
	bla (0.248694)
	cbe (0.239234)
	pgl (0.236967)
	hea (0.204499)
	aor (0.195274)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	fhi (0.169578)
	cje (0.165235)
	ski (0.146735)
	csk (0.140746)
	ova (0.129132)
	ebs (0.118301)
	jca (0.11396)
	jej (0.0989218)