Ss1.1-Lng1-LNG010089E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGTGGCCGGGGACTGTGTGAGAGCGGTAAGATGGCGGCGGCGGCGGTGGTGGAGT TCCAGAGAGCCCAGTCTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATCCTCCACT CCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGAGGCAGTACAGGTCAAAGAGCAGA GCATTCTGGAACTGGGGTCTCTCCTGGCGAAGACTGGACAAGCTGCAGAGCTTGGAGGAC TCCTGAAGTATGTACGACCCTTCTTGAATTCCATCAGCAAGGCTAAAGCAGCTCGTCTGG TCCGATCTCTTCTTGATCTGTTTCTTGATATGGAAGCAGCTACAGGGCAGGAGGTCGAAT TGTGTTTAGAGTGCATCGAATGGGCCAAATCAGAGAAAAGAACTTTCTTACGCCAGGCTT TGGAGGCAAGACTGGTGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATT TGGGTTCTCAGTTGCTGCGGGAGTTGAAAAAGATGGATGACAAAGCCCTTTTGGTGGAAG TACAGCTTTTAGAAAGCAAAACATACCATGCCCTGAGTAACCTGCCAAAAGCCCGAGCTG CCTTAACCTCTGCTCGAACCACAGCAAATGCCATTTACTGCCCCCCTAAGTTGCAGGCCA CATTGGATATGCAGTCAGGTATTATCCATGCAGCAGAGGAGAAGGATTGGAAAACTGCAT ACTCATATTTCTATGAGGCATTTGAGGGTTATGACTCCATCGATAGCCCCAAGGCCATCA CGTCTCTGAAGTACATGTTGCTGTGCAAAATCATGCTCAACACCCCAGAAGATGTCCAGG CTTTGGTGAGCGGGAAGCTTGCACTTCGGTATGCGGGGAGGCAGACAGAAGCATTAAAAT GTGTGGCTCAGGCCAGCAAGAACAGATCACTGGCAGATTTTGAAAAGGCCCTGACGGATT ACCGGGCAGAGCTCCGGGATGACCCAATCATCAGCACGCACTTGGCCAAGTTGTATGACA ACTTACTGGAACAGAATCTCATCCGAGTCATTGAGCCTTTTTCCCGAGTACAGATTGAAC ACATATCTAGCCTCATCAAACTCTCCAAGGCCGATGTGGAAAGGAAATTATCACAGATGA TTCTTGACAAGAAATTTCATGGGATCTTGGACCAGGGGGAGGGCGTCTTGATTATTTTCG ATGAACCCCCAGTAGATAAAACGTACGAAGCTGCACTGGAAACAATTCAGAACATGAGTA AAGTAGTGGATTCCCTCTACAACAAAGCCAAGAAACTGACATAGAATTGGATCTGTAGCG GTCCTTTGGAGAGTGTGTGTGGCGGGAGAGTGAAACCTTTGGGGAAAATGCTAGGAGATT CTTTTTTCTTTCTGTTCTACTTTTCGCTCGGAAAGTTTTTAAATCCTCATTTGGTGCATC TGTATTCCAGCCGATAGGTGTGCCAGTTTTCATGTAATCTTTACTGGCCCAACTTGGGAG TGGGGAAATTGCTTAAAAAAAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGTGGCCGGGGACTGTGTGAGAGCGGTAAGATGGCGGCGGCGGCGGTGGTGGAGT TCCAGAGAGCCCAGTCTCTACTCAGCACCGACCGGGAGGCCTCCATCGACATCCTCCACT CCATCGTGAAGCGTGACATTCAGGAGAATGATGAGGAGGCAGTACAGGTCAAAGAGCAGA GCATTCTGGAACTGGGGTCTCTCCTGGCGAAGACTGGACAAGCTGCAGAGCTTGGAGGAC TCCTGAAGTATGTACGACCCTTCTTGAATTCCATCAGCAAGGCTAAAGCAGCTCGTCTGG TCCGATCTCTTCTTGATCTGTTTCTTGATATGGAAGCAGCTACAGGGCAGGAGGTCGAAT TGTGTTTAGAGTGCATCGAATGGGCCAAATCAGAGAAAAGAACTTTCTTACGCCAGGCTT TGGAGGCAAGACTGGTGTCTTTGTACTTTGATACCAAGAGGTACCAGGAAGCATTGCATT TGGGTTCTCAGTTGCTGCGGGAGTTGAAAAAGATGGATGACAAAGCCCTTTTGGTGGAAG TACAGCTTTTAGAAAGCAAAACATACCATGCCCTGAGTAACCTGCCAAAAGCCCGAGCTG CCTTAACCTCTGCTCGAACCACAGCAAATGCCATTTACTGCCCCCCTAAGTTGCAGGCCA CATTGGATATGCAGTCAGGTATTATCCATGCAGCAGAGGAGAAGGATTGGAAAACTGCAT ACTCATATTTCTATGAGGCATTTGAGGGTTATGACTCCATCGATAGCCCCAAGGCCATCA CGTCTCTGAAGTACATGTTGCTGTGCAAAATCATGCTCAACACCCCAGAAGATGTCCAGG CTTTGGTGAGCGGGAAGCTTGCACTTCGGTATGCGGGGAGGCAGACAGAAGCATTAAAAT GTGTGGCTCAGGCCAGCAAGAACAGATCACTGGCAGATTTTGAAAAGGCCCTGACGGATT ACCGGGCAGAGCTCCGGGATGACCCAATCATCAGCACGCACTTGGCCAAGTTGTATGACA ACTTACTGGAACAGAATCTCATCCGAGTCATTGAGCCTTTTTCCCGAGTACAGATTGAAC ACATATCTAGCCTCATCAAACTCTCCAAGGCCGATGTGGAAAGGAAATTATCACAGATGA TTCTTGACAAGAAATTTCATGGGATCTTGGACCAGGGGGAGGGCGTCTTGATTATTTTCG ATGAACCCCCAGTAGATAAAACGTACGAAGCTGCACTGGAAACAATTCAGAACATGAGTA AAGTAGTGGATTCCCTCTACAACAAAGCCAAGAAACTGACATAGAATTGGATCTGTAGCG GTCCTTTGGAGAGTGTGTGTGGCGGGAGAGTGAAACCTTTGGGGAAAATGCTAGGAGATT CTTTTTTCTTTCTGTTCTACTTTTCGCTCGGAAAGTTTTTAAATCCTCATTTGGTGCATC TGTATTCCAGCCGATAGGTGTGCCAGTTTTCATGTAATCTTTACTGGCCCAACTTGGGAG TGGGGAAATTGCTTAAAAAAAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 562-681, - strand, RNAz p=0.717124 | |
| 954-1073, - strand, RNAz p=0.569776 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 562-681, - strand, RNAz p=0.717124 | |
| 954-1073, - strand, RNAz p=0.569776 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-126, gnl|bosTau2|chr19 (12557708-12557833) | |
| 1-126, gnl|Hg17|chr17 (27795620-27795745) | |
| 1-126, gnl|Mm7|chr11 (80510205-80510330) | |
| 226-355, gnl|bosTau2|chr19 (12565473-12565602) | |
| 226-355, gnl|canFam2|chr9 (43850799-43850649) | |
| 226-355, gnl|danRer3|chr3 (30624433-30624570) | |
| 226-355, gnl|dasNov1|scaffold_27126 (36428-36578) | |
| 226-355, gnl|echTel1|scaffold_324462 (224814-224664) | |
| 226-355, gnl|fr1|chrUn (278028230-278028083) | |
| 226-355, gnl|hg17|chr17 (27805606-27805754) | |
| 226-355, gnl|Hg17|chr17 (27805623-27805752) | |
| 226-355, gnl|loxAfr1|scaffold_25731 (1530-1381) | |
| 226-355, gnl|mm7|chr11 (80519804-80519954) | |
| 226-355, gnl|Mm7|chr11 (80519821-80519952) | |
| 226-355, gnl|monDom2|scaffold_44 (11344982-11344832) | |
| 226-355, gnl|oryCun1|scaffold_211647 (41785-41938) | |
| 226-355, gnl|panTro1|chr19 (31300331-31300479) | |
| 226-355, gnl|rheMac2|chr16 (27786036-27786184) | |
| 226-355, gnl|rn3|chr10 (68689068-68689218) | |
| 226-355, gnl|tetNig1|chr2 (1283316-1283169) | |
| 226-355, gnl|xenTro1|scaffold_221 (991333-991496) | |
| 452-681, gnl|bosTau2|chr19 (12574546-12574775) | |
| 452-681, gnl|Hg17|chr17 (27820100-27820327) | |
| 452-681, gnl|Mm7|chr11 (80537782-80538012) | |
| 946-1073, gnl|bosTau2|chr19 (12583545-12583672) | |
| 946-1073, gnl|canFam2|chr9 (43831632-43831473) | |
| 946-1073, gnl|danRer3|chr3 (30629152-30629305) | |
| 946-1073, gnl|dasNov1|scaffold_37770 (7593-7751) | |
| 946-1073, gnl|echTel1|scaffold_324462 (204280-204122) | |
| 946-1073, gnl|fr1|chrUn (278026037-278025880) | |
| 946-1073, gnl|hg17|chr17 (27830369-27830527) | |
| 946-1073, gnl|Hg17|chr17 (27830380-27830507) | |
| 946-1073, gnl|loxAfr1|scaffold_26335 (43362-43520) | |
| 946-1073, gnl|mm7|chr11 (80551364-80551522) | |
| 946-1073, gnl|Mm7|chr11 (80551375-80551502) | |
| 946-1073, gnl|monDom2|scaffold_44 (11329630-11329472) | |
| 946-1073, gnl|oryCun1|scaffold_204815 (179525-179386) | |
| 946-1073, gnl|panTro1|chr19 (31351411-31351569) | |
| 946-1073, gnl|rheMac2|chr16 (27811595-27811753) | |
| 946-1073, gnl|rn3|chr10 (68721556-68721713) | |
| 946-1073, gnl|tetNig1|chr2 (1279794-1279648) | |
| 946-1073, gnl|xenTro1|scaffold_221 (997838-997974) | |
| 1161-1304, gnl|bosTau2|chr19 (12584792-12584935) | |
| 1161-1304, gnl|Hg17|chr17 (27831619-27831762) | |
| 1161-1304, gnl|Mm7|chr11 (80553026-80553169) | |
| 1327-1524, gnl|bosTau2|chr17 (9905120-9905317) | |
| 1327-1524, gnl|Hg17|chr17 (27831893-27832104) | |
| 1327-1524, gnl|Mm7|chr11 (80553307-80553495) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-126, gnl|bosTau2|chr19 (12557708-12557833) | |
| 1-126, gnl|Hg17|chr17 (27795620-27795745) | |
| 1-126, gnl|Mm7|chr11 (80510205-80510330) | |
| 226-355, gnl|bosTau2|chr19 (12565473-12565602) | |
| 226-355, gnl|canFam2|chr9 (43850799-43850649) | |
| 226-355, gnl|danRer3|chr3 (30624433-30624570) | |
| 226-355, gnl|dasNov1|scaffold_27126 (36428-36578) | |
| 226-355, gnl|echTel1|scaffold_324462 (224814-224664) | |
| 226-355, gnl|fr1|chrUn (278028230-278028083) | |
| 226-355, gnl|hg17|chr17 (27805606-27805754) | |
| 226-355, gnl|Hg17|chr17 (27805623-27805752) | |
| 226-355, gnl|loxAfr1|scaffold_25731 (1530-1381) | |
| 226-355, gnl|mm7|chr11 (80519804-80519954) | |
| 226-355, gnl|Mm7|chr11 (80519821-80519952) | |
| 226-355, gnl|monDom2|scaffold_44 (11344982-11344832) | |
| 226-355, gnl|oryCun1|scaffold_211647 (41785-41938) | |
| 226-355, gnl|panTro1|chr19 (31300331-31300479) | |
| 226-355, gnl|rheMac2|chr16 (27786036-27786184) | |
| 226-355, gnl|rn3|chr10 (68689068-68689218) | |
| 226-355, gnl|tetNig1|chr2 (1283316-1283169) | |
| 226-355, gnl|xenTro1|scaffold_221 (991333-991496) | |
| 452-681, gnl|bosTau2|chr19 (12574546-12574775) | |
| 452-681, gnl|Hg17|chr17 (27820100-27820327) | |
| 452-681, gnl|Mm7|chr11 (80537782-80538012) | |
| 946-1073, gnl|bosTau2|chr19 (12583545-12583672) | |
| 946-1073, gnl|canFam2|chr9 (43831632-43831473) | |
| 946-1073, gnl|danRer3|chr3 (30629152-30629305) | |
| 946-1073, gnl|dasNov1|scaffold_37770 (7593-7751) | |
| 946-1073, gnl|echTel1|scaffold_324462 (204280-204122) | |
| 946-1073, gnl|fr1|chrUn (278026037-278025880) | |
| 946-1073, gnl|hg17|chr17 (27830369-27830527) | |
| 946-1073, gnl|Hg17|chr17 (27830380-27830507) | |
| 946-1073, gnl|loxAfr1|scaffold_26335 (43362-43520) | |
| 946-1073, gnl|mm7|chr11 (80551364-80551522) | |
| 946-1073, gnl|Mm7|chr11 (80551375-80551502) | |
| 946-1073, gnl|monDom2|scaffold_44 (11329630-11329472) | |
| 946-1073, gnl|oryCun1|scaffold_204815 (179525-179386) | |
| 946-1073, gnl|panTro1|chr19 (31351411-31351569) | |
| 946-1073, gnl|rheMac2|chr16 (27811595-27811753) | |
| 946-1073, gnl|rn3|chr10 (68721556-68721713) | |
| 946-1073, gnl|tetNig1|chr2 (1279794-1279648) | |
| 946-1073, gnl|xenTro1|scaffold_221 (997838-997974) | |
| 1161-1304, gnl|bosTau2|chr19 (12584792-12584935) | |
| 1161-1304, gnl|Hg17|chr17 (27831619-27831762) | |
| 1161-1304, gnl|Mm7|chr11 (80553026-80553169) | |
| 1327-1524, gnl|bosTau2|chr17 (9905120-9905317) | |
| 1327-1524, gnl|Hg17|chr17 (27831893-27832104) | |
| 1327-1524, gnl|Mm7|chr11 (80553307-80553495) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| sme (0.610874) | |
| tbr (0.462535) | |
| cst (0.420109) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| sin (0.349895) | |
| ecc (0.345105) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| thg (0.253582) | |
| bla (0.248694) | |
| clu (0.239292) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cli (0.152812) | |
| lin (0.145603) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.610874) | |
| tbr (0.462535) | |
| cst (0.420109) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| sin (0.349895) | |
| ecc (0.345105) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| thg (0.253582) | |
| bla (0.248694) | |
| clu (0.239292) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| mga (0.160205) | |
| cli (0.152812) | |
| lin (0.145603) | |
| csk (0.140746) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| med (0.116252) | |
| jej (0.0989218) |