Non-Coding RNA Search

Ss1.1-Lng1-LNG010089E12.5

Sequence:


               
               CGGTGGGGCGGAGGCGGGAGAAGCGAGACGCGCGATGAGTGGTCTCGGCCGGCTCTTCGG
GAGGGGGAAGAAGGAGAAGGGGCCAACCCCTGAAGAGGCAATACAGAAACTGAAGGAGAC
AGAGAAAATATTGATCAAGAAACAGGAGTTTCTGGAGCAGAAGATTCAACAGGAGCTACA
AACCGCCAAGAAGCATGGGACCAAGAATAAGAGAGCCGCCCTACAGGCTTTGCGGAGAAA
GAAGAGGTTGGAACGGCAGCTGGCACAAACCGACGGGACGTTATCCACCCTGGAGTTTCA
GCGTGAAGCCATTGAGAATGCCACCACCAATGCAGAAGTGCTTCGTACCATGGAGATTGC
TGCCCAAGGCATGAAGAAGGCCTACCAGGACATGGACATTGACAAGGTGGATGAACTGAT
GGCTGACATCACAGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCC
CATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGTTGGAGGAACTAGAGGAGCTCGA
GCAGGAGGAATTGGCCCAAGAATTGTTACAAGTGGGCGAAAAGGCAGAGGAACCCCCAAT
CAAACTTCCCAGTGTACCCTCTACACATCTGCCTGCAGAGCCAGCTCCCAAAGCAGATGA
AGATGAAGAAGAACTAAAGCAGTTGGCTGAATGGGTGTCCTGATGAGTCTGGGCTTGTCT
ACCCAATGCTGCCTACGTTGTTCTCTTTTCCTTAAGTGCCAAGTGCTGAGCTAAAGGAAC
CTAGCCTTGTTGGGAGGTCCTGCTGAGGGTGGCAGTATGACCCTGTGTGAGAAAAGGGTC
TGTTGCCCTCCCATCCCTGGCTCAACTCTGAAGAAGGATCTCGGTGTGGGAGGAGCCCCT
GGGCTCCCTTCGATAGCAGTTACAGTGCCCTTGTTCCCAATAAAATGGGGCAGATGGAAT
CCTAGTGCTAATACTGCCTTGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGTGGGGCGGAGGCGGGAGAAGCGAGACGCGCGATGAGTGGTCTCGGCCGGCTCTTCGG
GAGGGGGAAGAAGGAGAAGGGGCCAACCCCTGAAGAGGCAATACAGAAACTGAAGGAGAC
AGAGAAAATATTGATCAAGAAACAGGAGTTTCTGGAGCAGAAGATTCAACAGGAGCTACA
AACCGCCAAGAAGCATGGGACCAAGAATAAGAGAGCCGCCCTACAGGCTTTGCGGAGAAA
GAAGAGGTTGGAACGGCAGCTGGCACAAACCGACGGGACGTTATCCACCCTGGAGTTTCA
GCGTGAAGCCATTGAGAATGCCACCACCAATGCAGAAGTGCTTCGTACCATGGAGATTGC
TGCCCAAGGCATGAAGAAGGCCTACCAGGACATGGACATTGACAAGGTGGATGAACTGAT
GGCTGACATCACAGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCC
CATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGTTGGAGGAACTAGAGGAGCTCGA
GCAGGAGGAATTGGCCCAAGAATTGTTACAAGTGGGCGAAAAGGCAGAGGAACCCCCAAT
CAAACTTCCCAGTGTACCCTCTACACATCTGCCTGCAGAGCCAGCTCCCAAAGCAGATGA
AGATGAAGAAGAACTAAAGCAGTTGGCTGAATGGGTGTCCTGATGAGTCTGGGCTTGTCT
ACCCAATGCTGCCTACGTTGTTCTCTTTTCCTTAAGTGCCAAGTGCTGAGCTAAAGGAAC
CTAGCCTTGTTGGGAGGTCCTGCTGAGGGTGGCAGTATGACCCTGTGTGAGAAAAGGGTC
TGTTGCCCTCCCATCCCTGGCTCAACTCTGAAGAAGGATCTCGGTGTGGGAGGAGCCCCT
GGGCTCCCTTCGATAGCAGTTACAGTGCCCTTGTTCCCAATAAAATGGGGCAGATGGAAT
CCTAGTGCTAATACTGCCTTGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SHAX2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               SHAX2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               761-914, + strand, RNAz p=0.972191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               761-914, + strand, RNAz p=0.972191

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX161512, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX161512, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               214-394, gnl|bosTau2|chr10 (12280906-12281086)
               

               
               214-394, gnl|canFam2|chr8 (7203742-7203928)
               

               
               214-394, gnl|danRer3|chrNA (149052677-149052493)
               

               
               214-394, gnl|dasNov1|scaffold_49563 (3416-3229)
               

               
               214-394, gnl|echTel1|scaffold_189359 (9153-9339)
               

               
               214-394, gnl|fr1|chrUn (251050915-251050730)
               

               
               214-394, gnl|hg17|chr14 (23750457-23750643)
               

               
               214-394, gnl|Hg17|chr14 (23750640-23750460)
               

               
               214-394, gnl|loxAfr1|scaffold_11963 (58172-57986)
               

               
               214-394, gnl|mm7|chr2 (154430559-154430375)
               

               
               214-394, gnl|Mm7|chr2 (154430374-154430554)
               

               
               214-394, gnl|monDom2|scaffold_12 (25555147-25554961)
               

               
               214-394, gnl|oryCun1|scaffold_178860 (84194-84008)
               

               
               214-394, gnl|panTro1|chr15 (22652318-22652504)
               

               
               214-394, gnl|rheMac2|chr7 (87105665-87105851)
               

               
               214-394, gnl|rn3|chr4_random (563504-563682)
               

               
               214-394, gnl|tetNig1|chrUn_random (11884305-11884490)
               

               
               214-394, gnl|xenTro1|scaffold_35 (1831227-1831412)
               


               
               643-984, gnl|bosTau2|chr10 (12282653-12282991)
               

               
               643-984, gnl|Hg17|chr14 (23748983-23748636)
               

               
               643-984, gnl|Mm7|chr14 (50522230-50521912)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-394, gnl|bosTau2|chr10 (12280906-12281086)
               

               
               214-394, gnl|canFam2|chr8 (7203742-7203928)
               

               
               214-394, gnl|danRer3|chrNA (149052677-149052493)
               

               
               214-394, gnl|dasNov1|scaffold_49563 (3416-3229)
               

               
               214-394, gnl|echTel1|scaffold_189359 (9153-9339)
               

               
               214-394, gnl|fr1|chrUn (251050915-251050730)
               

               
               214-394, gnl|hg17|chr14 (23750457-23750643)
               

               
               214-394, gnl|Hg17|chr14 (23750640-23750460)
               

               
               214-394, gnl|loxAfr1|scaffold_11963 (58172-57986)
               

               
               214-394, gnl|mm7|chr2 (154430559-154430375)
               

               
               214-394, gnl|Mm7|chr2 (154430374-154430554)
               

               
               214-394, gnl|monDom2|scaffold_12 (25555147-25554961)
               

               
               214-394, gnl|oryCun1|scaffold_178860 (84194-84008)
               

               
               214-394, gnl|panTro1|chr15 (22652318-22652504)
               

               
               214-394, gnl|rheMac2|chr7 (87105665-87105851)
               

               
               214-394, gnl|rn3|chr4_random (563504-563682)
               

               
               214-394, gnl|tetNig1|chrUn_random (11884305-11884490)
               

               
               214-394, gnl|xenTro1|scaffold_35 (1831227-1831412)
               


               
               643-984, gnl|bosTau2|chr10 (12282653-12282991)
               

               
               643-984, gnl|Hg17|chr14 (23748983-23748636)
               

               
               643-984, gnl|Mm7|chr14 (50522230-50521912)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               elu (0.385356)
               

               
               cag (0.302389)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cag (0.302389)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	214-394, gnl\|bosTau2\|chr10 (12280906-12281086)
	214-394, gnl\|canFam2\|chr8 (7203742-7203928)
	214-394, gnl\|danRer3\|chrNA (149052677-149052493)
	214-394, gnl\|dasNov1\|scaffold_49563 (3416-3229)
	214-394, gnl\|echTel1\|scaffold_189359 (9153-9339)
	214-394, gnl\|fr1\|chrUn (251050915-251050730)
	214-394, gnl\|hg17\|chr14 (23750457-23750643)
	214-394, gnl\|Hg17\|chr14 (23750640-23750460)
	214-394, gnl\|loxAfr1\|scaffold_11963 (58172-57986)
	214-394, gnl\|mm7\|chr2 (154430559-154430375)
	214-394, gnl\|Mm7\|chr2 (154430374-154430554)
	214-394, gnl\|monDom2\|scaffold_12 (25555147-25554961)
	214-394, gnl\|oryCun1\|scaffold_178860 (84194-84008)
	214-394, gnl\|panTro1\|chr15 (22652318-22652504)
	214-394, gnl\|rheMac2\|chr7 (87105665-87105851)
	214-394, gnl\|rn3\|chr4_random (563504-563682)
	214-394, gnl\|tetNig1\|chrUn_random (11884305-11884490)
	214-394, gnl\|xenTro1\|scaffold_35 (1831227-1831412)

	643-984, gnl\|bosTau2\|chr10 (12282653-12282991)
	643-984, gnl\|Hg17\|chr14 (23748983-23748636)
	643-984, gnl\|Mm7\|chr14 (50522230-50521912)

	elu (0.385356)
	cag (0.302389)
	fty (0.17584)
	fhi (0.169578)
	eep (0.122564)
	eru (0.120048)