Non-Coding RNA Search

Ss1.1-Lng1-LNG010089G11.5

Sequence:


               
               TTGGTGCCATTTCTCGAACTTCCAAAACAATGTATCAGAGTGCTGGCCCAATGCAGGCTA
TGGCACCTCAGGGAGCTCCCACAAAGTCTATTAACATTTCAGATTACAGTCCCTATGGAA
CCCATGGTGGCTGGGGAGGTTCTCCATATTCACCTCATCAAAACATACCTTCTCAGGGAC
ACTTCAGTGAGAGGGAGAGAATATCTATGTCAGAAGTGGCCAGTCGTGGAAAACCCCTTC
CATCTGCTGAGAGGGAACAGCTACGACTAGAATTACAGCAACTAAACCATCAAATTAGCC
AACAGACCCAGCTACGTGGACTAGAGAGGGAGGCGAACACCCTGGCAAGCCAGTCACAGC
CCCCACCACCACCTCCAAAATGGCCTGGAATGATCTCAAGTGAGCAGTTGAGCTTGGAAT
TGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACCCGAGAACTGAGTATGGAGAACCAGT
GTTCTCTGGACATGAAAAGCAAATTGAATACAAGTAAGCAAGCAGAAAATGGACAACCAG
AACCACAAAATAAAGTTCCAGCTGAGGACCTTACATTGACATTCAGTGATGTGCCGAATG
GATCAGCCTTGACACAAGAGAATATCAGCCTCCTATCAAACAAGACCAGCTCTCTGAACC
TGTCAGAGGACCCCGAGGGAGGAGGGGACAATAATGACTCCCAGAGATCAGGAGTTACAC
CCAGTTCTGCTCCCTAAAATATGAGGAGTCCTACTTTTATCTTCTGCTCCTAACCAATTT
GTGGGGCATAGGGGTAGGAAAACGGATAATTTCTAACCCTTTTCTCTGAGGATGGTCAGA
GAAATCCAGGAAAAGCCCCGGAGGCAATGTGCACAAACACCGTTACTAAAAACAAACCCT
GCACATAGTTCACATTAATGCATTTTTTAATTTAAGAAAAAGAAAATTAGCAGTATCTGC
AAGCAATTCAGATTAAATTTGTTTTTGTTCTGTGAATGAACTTTATTTTAATAACTTTGG
ACCCCTTGGATCCAGGGCTTTAAAAAAAAGATATTATATATACACTCTGTTTGATTAATT
GTATGATCTTAATGAAGTAGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTGCCATTTCTCGAACTTCCAAAACAATGTATCAGAGTGCTGGCCCAATGCAGGCTA
TGGCACCTCAGGGAGCTCCCACAAAGTCTATTAACATTTCAGATTACAGTCCCTATGGAA
CCCATGGTGGCTGGGGAGGTTCTCCATATTCACCTCATCAAAACATACCTTCTCAGGGAC
ACTTCAGTGAGAGGGAGAGAATATCTATGTCAGAAGTGGCCAGTCGTGGAAAACCCCTTC
CATCTGCTGAGAGGGAACAGCTACGACTAGAATTACAGCAACTAAACCATCAAATTAGCC
AACAGACCCAGCTACGTGGACTAGAGAGGGAGGCGAACACCCTGGCAAGCCAGTCACAGC
CCCCACCACCACCTCCAAAATGGCCTGGAATGATCTCAAGTGAGCAGTTGAGCTTGGAAT
TGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACCCGAGAACTGAGTATGGAGAACCAGT
GTTCTCTGGACATGAAAAGCAAATTGAATACAAGTAAGCAAGCAGAAAATGGACAACCAG
AACCACAAAATAAAGTTCCAGCTGAGGACCTTACATTGACATTCAGTGATGTGCCGAATG
GATCAGCCTTGACACAAGAGAATATCAGCCTCCTATCAAACAAGACCAGCTCTCTGAACC
TGTCAGAGGACCCCGAGGGAGGAGGGGACAATAATGACTCCCAGAGATCAGGAGTTACAC
CCAGTTCTGCTCCCTAAAATATGAGGAGTCCTACTTTTATCTTCTGCTCCTAACCAATTT
GTGGGGCATAGGGGTAGGAAAACGGATAATTTCTAACCCTTTTCTCTGAGGATGGTCAGA
GAAATCCAGGAAAAGCCCCGGAGGCAATGTGCACAAACACCGTTACTAAAAACAAACCCT
GCACATAGTTCACATTAATGCATTTTTTAATTTAAGAAAAAGAAAATTAGCAGTATCTGC
AAGCAATTCAGATTAAATTTGTTTTTGTTCTGTGAATGAACTTTATTTTAATAACTTTGG
ACCCCTTGGATCCAGGGCTTTAAAAAAAAGATATTATATATACACTCTGTTTGATTAATT
GTATGATCTTAATGAAGTAGGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868640|ref|XP_600050.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868640|ref|XP_600050.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               623-822, + strand, RNAz p=0.987185

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               623-822, + strand, RNAz p=0.987185

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB095945, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB095945, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-102, gnl|bosTau2|chr21 (47612484-47612383)
               

               
               1-102, gnl|Hg17|chr1 (170648265-170648164)
               

               
               1-102, gnl|Mm7|chr1 (160924466-160924567)
               


               
               325-471, gnl|bosTau2|chr21 (47609707-47609558)
               

               
               325-471, gnl|Hg17|chr1 (170644385-170644236)
               

               
               325-471, gnl|Mm7|chr1 (160927058-160927204)
               


               
               584-1104, gnl|bosTau2|chr21 (47606918-47606392)
               

               
               584-1104, gnl|Hg17|chr1 (170639669-170639145)
               

               
               584-1104, gnl|Mm7|chr1 (160929727-160930245)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-102, gnl|bosTau2|chr21 (47612484-47612383)
               

               
               1-102, gnl|Hg17|chr1 (170648265-170648164)
               

               
               1-102, gnl|Mm7|chr1 (160924466-160924567)
               


               
               325-471, gnl|bosTau2|chr21 (47609707-47609558)
               

               
               325-471, gnl|Hg17|chr1 (170644385-170644236)
               

               
               325-471, gnl|Mm7|chr1 (160927058-160927204)
               


               
               584-1104, gnl|bosTau2|chr21 (47606918-47606392)
               

               
               584-1104, gnl|Hg17|chr1 (170639669-170639145)
               

               
               584-1104, gnl|Mm7|chr1 (160929727-160930245)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               cut (0.169924)

	1-102, gnl\|bosTau2\|chr21 (47612484-47612383)
	1-102, gnl\|Hg17\|chr1 (170648265-170648164)
	1-102, gnl\|Mm7\|chr1 (160924466-160924567)

	325-471, gnl\|bosTau2\|chr21 (47609707-47609558)
	325-471, gnl\|Hg17\|chr1 (170644385-170644236)
	325-471, gnl\|Mm7\|chr1 (160927058-160927204)

	584-1104, gnl\|bosTau2\|chr21 (47606918-47606392)
	584-1104, gnl\|Hg17\|chr1 (170639669-170639145)
	584-1104, gnl\|Mm7\|chr1 (160929727-160930245)