Non-Coding RNA Search

Ss1.1-Lng1-LNG010089H09.5

Sequence:


               
               GCAGCGAGTGGTTCTGGTGGCACTGGGAGGCCGAGAAGCTGCCAGCCTACCAGAATTTCA
TGAAGGAGAACTACCCGCCCGACTTTTCCTACGCTGACTTCGGGCCACAGTTTACAGCGC
ACTTCTTCCATCCTGACAGCTGGGCCGATCTGTTCGAGGCCTCCGGGGCCAAATATGTAG
TCCTGACAACAAAGCACCACGAAGGCTTCACAAACTGGCCGAGTCCTGTGTCTTGGAACT
GGAACTCTAAGGATGTGGGGCCCCATCGTGATTTGGTTGGTGAGTTGGGAACAGCTATCC
GGAAGAGGAACATACGCTATGGACTCTATCACTCACTCTTAGAATGGTTCCATCCTCTCT
ACCTGCGTGATAAGAAAAATGACTTCAAAACCCAATATTTTGTCCGTGCAAAAATAATGC
CAGAGCTATATGACCTTGTTAACAGGTACAAACCTGACTTGATTTGGTCTGACGGAGAGT
GGGAAGGCCCTGATACGTATTGGAACTCTACAGATTTCCTTTCTTGGCTCTACAATGATA
GCCCAGTAAAGGATGTGGTCGTAGTAAATGACCGATGGGGTAAGAACTGTTCCTGTCACC
ACGGAGGATACTACAACTGTCAAGATAAATTCATGCCAGAGACCTTGCCAGATCACAAGT
GGGAGATGTGCACCTCCATAGACAAGATGTCCTGGGGCTACCGTCGCGACATGATGATAA
CTGACGTTGCAAGTGAATATTCAATCATTTCGGAACTGGTTCAGACAGTAAGTTTGGGAG
GCAACTATCTTCTCAACATTGGACCAACTAAAGATGGACTGATTGTTCCCATCTTCCAAG
AAAGGCTTCTTGCTGTTGGGAAGTGGCTGAGCATCAATGGGGAAGCCATCTATGCCTCCA
AACCCTGGAGGGTACAGTTTGAAAAGAACGAGACCTCTGTGTGGTATACCTCAAAAGGAT
CAACTGTTTATGCCATTTTCCTGCACTGGCCAGAATCCGGAATCTTAAGCCTTGAATCCC
CCATAGCTACCTCAACCACACAGATAACCATGCTGGGAATCCAAAACGATCTGAAGTGGT
CCACAAATCCAGGTGAAGGTCTCCTCGTGTACCTGCCCCACTTACCCCCCGCTGCCGTTC
CGACTGAGTTTGCTTGGACTCTAAGGCTGACAGGAGTGAAGTGATCATTGGAGTTCAAGA
AGAAAGGGACACTGCTTGCACTTTGATTTTCCTCTTTATACAACCGTCGTGGTAATAAAC
TGCTCCTCTCTACTCAGAGATGGTTTTTCTAATACATTTTAATAAAAGGAACTGATTACA
TTACTCACAGGATCAAAGGTCTCAGCTCCATTGCTAACATAGCTCTCTCTGATCAGCAGA
AGGGGACTGCACAGTTAAGCTCTGAGTTTATCCATTCCCAACTTTGGGAGTTACCCACAA
CGAAACTTCCCTTCATTCTGTGTTCGATAACCTGCTTGTTTACTCAAATGACTTCAGGTC
AAGAATAAGCCAAGTTATCCCGCTGCCTATGGAAGGAGCTAACAAGGATTTGGCAAGCTC
CACCAATGCTACTTATGTAGCATCAACTTACACCAACTATCCCCACCTACTCCCAGGAGC
AGGAGAGCCTGGAAGGGAAGGAAAATGCTCCCCAAGCTACTAACAGCTTCTTAGAAGTTT
CCAAAGCAAACTATGAGCACTGAAGTTCATTCTGTTTACAATGAGACTATGAAGAAAAGG
AATGTGATTCTGCCCTCCTTTGTGTAATACAATCATGAATAAATTTGCATGTCAAATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGAGTGGTTCTGGTGGCACTGGGAGGCCGAGAAGCTGCCAGCCTACCAGAATTTCA
TGAAGGAGAACTACCCGCCCGACTTTTCCTACGCTGACTTCGGGCCACAGTTTACAGCGC
ACTTCTTCCATCCTGACAGCTGGGCCGATCTGTTCGAGGCCTCCGGGGCCAAATATGTAG
TCCTGACAACAAAGCACCACGAAGGCTTCACAAACTGGCCGAGTCCTGTGTCTTGGAACT
GGAACTCTAAGGATGTGGGGCCCCATCGTGATTTGGTTGGTGAGTTGGGAACAGCTATCC
GGAAGAGGAACATACGCTATGGACTCTATCACTCACTCTTAGAATGGTTCCATCCTCTCT
ACCTGCGTGATAAGAAAAATGACTTCAAAACCCAATATTTTGTCCGTGCAAAAATAATGC
CAGAGCTATATGACCTTGTTAACAGGTACAAACCTGACTTGATTTGGTCTGACGGAGAGT
GGGAAGGCCCTGATACGTATTGGAACTCTACAGATTTCCTTTCTTGGCTCTACAATGATA
GCCCAGTAAAGGATGTGGTCGTAGTAAATGACCGATGGGGTAAGAACTGTTCCTGTCACC
ACGGAGGATACTACAACTGTCAAGATAAATTCATGCCAGAGACCTTGCCAGATCACAAGT
GGGAGATGTGCACCTCCATAGACAAGATGTCCTGGGGCTACCGTCGCGACATGATGATAA
CTGACGTTGCAAGTGAATATTCAATCATTTCGGAACTGGTTCAGACAGTAAGTTTGGGAG
GCAACTATCTTCTCAACATTGGACCAACTAAAGATGGACTGATTGTTCCCATCTTCCAAG
AAAGGCTTCTTGCTGTTGGGAAGTGGCTGAGCATCAATGGGGAAGCCATCTATGCCTCCA
AACCCTGGAGGGTACAGTTTGAAAAGAACGAGACCTCTGTGTGGTATACCTCAAAAGGAT
CAACTGTTTATGCCATTTTCCTGCACTGGCCAGAATCCGGAATCTTAAGCCTTGAATCCC
CCATAGCTACCTCAACCACACAGATAACCATGCTGGGAATCCAAAACGATCTGAAGTGGT
CCACAAATCCAGGTGAAGGTCTCCTCGTGTACCTGCCCCACTTACCCCCCGCTGCCGTTC
CGACTGAGTTTGCTTGGACTCTAAGGCTGACAGGAGTGAAGTGATCATTGGAGTTCAAGA
AGAAAGGGACACTGCTTGCACTTTGATTTTCCTCTTTATACAACCGTCGTGGTAATAAAC
TGCTCCTCTCTACTCAGAGATGGTTTTTCTAATACATTTTAATAAAAGGAACTGATTACA
TTACTCACAGGATCAAAGGTCTCAGCTCCATTGCTAACATAGCTCTCTCTGATCAGCAGA
AGGGGACTGCACAGTTAAGCTCTGAGTTTATCCATTCCCAACTTTGGGAGTTACCCACAA
CGAAACTTCCCTTCATTCTGTGTTCGATAACCTGCTTGTTTACTCAAATGACTTCAGGTC
AAGAATAAGCCAAGTTATCCCGCTGCCTATGGAAGGAGCTAACAAGGATTTGGCAAGCTC
CACCAATGCTACTTATGTAGCATCAACTTACACCAACTATCCCCACCTACTCCCAGGAGC
AGGAGAGCCTGGAAGGGAAGGAAAATGCTCCCCAAGCTACTAACAGCTTCTTAGAAGTTT
CCAAAGCAAACTATGAGCACTGAAGTTCATTCTGTTTACAATGAGACTATGAAGAAAAGG
AATGTGATTCTGCCCTCCTTTGTGTAATACAATCATGAATAAATTTGCATGTCAAATCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|182790|gb|AAA52482.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|182790|gb|AAA52482.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1606-1716, - strand, RNAz p=0.553144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1606-1716, - strand, RNAz p=0.553144

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               168-1605, gnl|bosTau2|chr2 (11496811-11495382)
               

               
               168-1605, gnl|Hg17|chr2 (177496196-177494790)
               

               
               168-1605, gnl|Mm7|chr2 (75146742-75145401)
               


               
               1606-1795, gnl|bosTau2|chr2 (11495357-11495165)
               

               
               1606-1795, gnl|Hg17|chr2 (177494772-177494565)
               

               
               1606-1795, gnl|Mm7|chr2 (75145381-75145199)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-1605, gnl|bosTau2|chr2 (11496811-11495382)
               

               
               168-1605, gnl|Hg17|chr2 (177496196-177494790)
               

               
               168-1605, gnl|Mm7|chr2 (75146742-75145401)
               


               
               1606-1795, gnl|bosTau2|chr2 (11495357-11495165)
               

               
               1606-1795, gnl|Hg17|chr2 (177494772-177494565)
               

               
               1606-1795, gnl|Mm7|chr2 (75145381-75145199)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               nje (0.33184)
               

               
               jej (0.296765)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               jej (0.296765)
               

               
               cov (0.264306)
               

               
               eru (0.240096)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	168-1605, gnl\|bosTau2\|chr2 (11496811-11495382)
	168-1605, gnl\|Hg17\|chr2 (177496196-177494790)
	168-1605, gnl\|Mm7\|chr2 (75146742-75145401)

	1606-1795, gnl\|bosTau2\|chr2 (11495357-11495165)
	1606-1795, gnl\|Hg17\|chr2 (177494772-177494565)
	1606-1795, gnl\|Mm7\|chr2 (75145381-75145199)

	nje (0.33184)
	jej (0.296765)
	cov (0.264306)
	eru (0.240096)
	cty (0.20816)
	col (0.195008)
	mcp (0.170648)
	cut (0.169924)
	hyp (0.142837)
	pty (0.142714)
	ute (0.132784)
	ova (0.129132)
	cbl (0.114797)
	eje (0.0988338)