Ss1.1-Lng1-LNG010092D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCACGCTTTCATCTGATCTGGGCCATTGCTGAGCCGCCGCACAGTGAAGGAGAAAGAA ATAAACTCCACCACCACCACCATGTGCTACGGGAAGTGTGCTCGGTGCATCGGACACTCT CTGGCCTGGCTCGCCGTCCTCTGTATCGTAGCTAATATTTTGCTTTACTTTCCCAATGGG GAGACAAAGTATGCTTCTGAAAACCATCTCAGCCGCTTTGTGTGGTTCTTCTCTGGCATT GCAGGAGGGGGCTTGCTGATATTCCTGCCGGCATTCGTCTTTATCGGGCTGGAACAGGAA GACTGCTGTGGCTGCTGTGGCCATGAAAACTGCGGCAAGAGATGTGCGATGCTTTCTTCC GTGCTGGCTGCTCTCATCGGAATTGCAGGATCTGGGTACTGCGTCATTGTGGCCGCACTG GGCTTAGCGGAAGGACCAATATGTGTTGATGCCAGTGGCCAGTGGAACTACACCTTTGCC AGCACGGAGGGAAAATACCTTGTGGATAGGTCCACGTGGTCCCAGTGCATTGAGCCCAAG CACATTGTGGAATGGAATGTCTCTCTGTTTTCTATCCTCCTGGCACTTGGTGGAATTGAA TTCATCTTGTGTCTCATTCAAGTAATAAATGGAGTGCTTGGAGGCATCTGTGGCTATTGC TGCTCTCGCCAACAGCAATATGACTGCTAAAAGAACCACCCCAAGGCAGGTCCACAACTT TCCTCGAAGTTGCTGTAATTTATATATTTTACTTGTATTAATTTGTAAAACTTTGTACTA GTGTATCATATGCCACATGTTCTACTTTTATAAGTGTGTATAAAGACTGGCATCTTGGAG TTCTCTTGTGGCACAGCCGGTTAAGGATCCAGTGTTGTCACTGCAGCGACTTGATCTCTG CTATGACGAGGGTTCAATCCCTGGCCCGGGAACTTCCACATGCCCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCACGCTTTCATCTGATCTGGGCCATTGCTGAGCCGCCGCACAGTGAAGGAGAAAGAA ATAAACTCCACCACCACCACCATGTGCTACGGGAAGTGTGCTCGGTGCATCGGACACTCT CTGGCCTGGCTCGCCGTCCTCTGTATCGTAGCTAATATTTTGCTTTACTTTCCCAATGGG GAGACAAAGTATGCTTCTGAAAACCATCTCAGCCGCTTTGTGTGGTTCTTCTCTGGCATT GCAGGAGGGGGCTTGCTGATATTCCTGCCGGCATTCGTCTTTATCGGGCTGGAACAGGAA GACTGCTGTGGCTGCTGTGGCCATGAAAACTGCGGCAAGAGATGTGCGATGCTTTCTTCC GTGCTGGCTGCTCTCATCGGAATTGCAGGATCTGGGTACTGCGTCATTGTGGCCGCACTG GGCTTAGCGGAAGGACCAATATGTGTTGATGCCAGTGGCCAGTGGAACTACACCTTTGCC AGCACGGAGGGAAAATACCTTGTGGATAGGTCCACGTGGTCCCAGTGCATTGAGCCCAAG CACATTGTGGAATGGAATGTCTCTCTGTTTTCTATCCTCCTGGCACTTGGTGGAATTGAA TTCATCTTGTGTCTCATTCAAGTAATAAATGGAGTGCTTGGAGGCATCTGTGGCTATTGC TGCTCTCGCCAACAGCAATATGACTGCTAAAAGAACCACCCCAAGGCAGGTCCACAACTT TCCTCGAAGTTGCTGTAATTTATATATTTTACTTGTATTAATTTGTAAAACTTTGTACTA GTGTATCATATGCCACATGTTCTACTTTTATAAGTGTGTATAAAGACTGGCATCTTGGAG TTCTCTTGTGGCACAGCCGGTTAAGGATCCAGTGTTGTCACTGCAGCGACTTGATCTCTG CTATGACGAGGGTTCAATCCCTGGCCCGGGAACTTCCACATGCCCCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 2-261, gnl|bosTau2|chr1 (75406079-75406336) | |
| 2-261, gnl|canFam2|chr23 (47290145-47289964) | |
| 2-261, gnl|dasNov1|scaffold_2416 (129314-129130) | |
| 2-261, gnl|echTel1|scaffold_154893 (717-540) | |
| 2-261, gnl|galGal2|chr9 (23308462-23308280) | |
| 2-261, gnl|hg17|chr3 (150577851-150578035) | |
| 2-261, gnl|Hg17|chr3 (150578107-150577853) | |
| 2-261, gnl|loxAfr1|scaffold_16584 (35245-35429) | |
| 2-261, gnl|mm7|chr3 (57421662-57421846) | |
| 2-261, gnl|Mm7|chr3 (57421924-57421664) | |
| 2-261, gnl|monDom2|scaffold_28 (21002903-21003086) | |
| 2-261, gnl|oryCun1|scaffold_145174 (8480-8303) | |
| 2-261, gnl|panTro1|chr2 (153602757-153602941) | |
| 2-261, gnl|rheMac2|chr2 (138417687-138417503) | |
| 2-261, gnl|rn3|chr2 (146479825-146480009) | |
| 2-261, gnl|xenTro1|scaffold_275 (299206-299024) | |
| 496-675, gnl|bosTau2|chr1 (75411307-75411486) | |
| 496-675, gnl|canFam2|chr23 (47205418-47205624) | |
| 496-675, gnl|dasNov1|scaffold_2416 (134446-134240) | |
| 496-675, gnl|echTel1|scaffold_283575 (36900-36694) | |
| 496-675, gnl|galGal2|chr9 (23311817-23311615) | |
| 496-675, gnl|hg17|chr3 (150572165-150572371) | |
| 496-675, gnl|Hg17|chr3 (150572351-150572172) | |
| 496-675, gnl|mm7|chr3 (57416737-57416943) | |
| 496-675, gnl|Mm7|chr3 (57416923-57416744) | |
| 496-675, gnl|monDom2|scaffold_28 (20994832-20995035) | |
| 496-675, gnl|oryCun1|scaffold_117698 (12875-13081) | |
| 496-675, gnl|panTro1|chr2 (153597072-153597278) | |
| 496-675, gnl|rheMac2|chr2 (138423645-138423439) | |
| 496-675, gnl|rn3|chr2 (146474055-146474261) | |
| 496-675, gnl|tetNig1|chr1 (16804207-16804023) | |
| 496-675, gnl|xenTro1|scaffold_275 (306277-306074) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-261, gnl|bosTau2|chr1 (75406079-75406336) | |
| 2-261, gnl|canFam2|chr23 (47290145-47289964) | |
| 2-261, gnl|dasNov1|scaffold_2416 (129314-129130) | |
| 2-261, gnl|echTel1|scaffold_154893 (717-540) | |
| 2-261, gnl|galGal2|chr9 (23308462-23308280) | |
| 2-261, gnl|hg17|chr3 (150577851-150578035) | |
| 2-261, gnl|Hg17|chr3 (150578107-150577853) | |
| 2-261, gnl|loxAfr1|scaffold_16584 (35245-35429) | |
| 2-261, gnl|mm7|chr3 (57421662-57421846) | |
| 2-261, gnl|Mm7|chr3 (57421924-57421664) | |
| 2-261, gnl|monDom2|scaffold_28 (21002903-21003086) | |
| 2-261, gnl|oryCun1|scaffold_145174 (8480-8303) | |
| 2-261, gnl|panTro1|chr2 (153602757-153602941) | |
| 2-261, gnl|rheMac2|chr2 (138417687-138417503) | |
| 2-261, gnl|rn3|chr2 (146479825-146480009) | |
| 2-261, gnl|xenTro1|scaffold_275 (299206-299024) | |
| 496-675, gnl|bosTau2|chr1 (75411307-75411486) | |
| 496-675, gnl|canFam2|chr23 (47205418-47205624) | |
| 496-675, gnl|dasNov1|scaffold_2416 (134446-134240) | |
| 496-675, gnl|echTel1|scaffold_283575 (36900-36694) | |
| 496-675, gnl|galGal2|chr9 (23311817-23311615) | |
| 496-675, gnl|hg17|chr3 (150572165-150572371) | |
| 496-675, gnl|Hg17|chr3 (150572351-150572172) | |
| 496-675, gnl|mm7|chr3 (57416737-57416943) | |
| 496-675, gnl|Mm7|chr3 (57416923-57416744) | |
| 496-675, gnl|monDom2|scaffold_28 (20994832-20995035) | |
| 496-675, gnl|oryCun1|scaffold_117698 (12875-13081) | |
| 496-675, gnl|panTro1|chr2 (153597072-153597278) | |
| 496-675, gnl|rheMac2|chr2 (138423645-138423439) | |
| 496-675, gnl|rn3|chr2 (146474055-146474261) | |
| 496-675, gnl|tetNig1|chr1 (16804207-16804023) | |
| 496-675, gnl|xenTro1|scaffold_275 (306277-306074) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| ese (0.126502) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| ctl (0.153069) | |
| cli (0.152812) | |
| ese (0.126502) |