Ss1.1-Lng1-LNG010092E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAAGCCGGCCGGGAGGGAGACCATGGCGGCCACGTTCTTCGGCGAGGTGGTGAAGGCG CCTTGCCGAGCCGGGACGGAGGATGAGGAGGAGGAAGAAGAGGGGAGGAGGGAGACGCCC GAGGACAGGGAGGTCCGGCGACAGCTGGCACGAAAGAGGGAGGTTCGGCTCCTTCGAAGA CAGACAAAAACATCTTTGGACGTTTCTCTGCTAGAAAAATATCCTTGCTCCAAGTTCATA ATCGCTATAGGAAATAATGCAGTAGCATTTTTATCATCATTTGTCATGAATTCAGGAGTC TGGGAAGAAGTTGGTTGTGCTAAGCTCTGGAATGAGTGGTGCCGGACAACAGACACTACA CATCTGTCCCCAGCGGAGGCTTTTTGTGTGTTTTATCACCTAAAATCGAATCCCTCGGTT TTGCTCTGTCAGTGCAGTTGCTACGTGGCTGAAGACCAGCAGTTTCAGTGGCTGGAAAAG GTTTTCGGCTCTTGTCCAAAGAAGAACATGCAAGTAACTGTTCTCACCTGTCGACACGTT ACTGACTTTAAAACCTCCGAATCCACCAGCAGCCTTCATACGCCTTTCCTGAGAGCCCTA AAGACACAGAATTTCCGAGAGGCTCCGTGCTGCTCTCTGCTGGAGCAACCAAATATCGTG CATGACCTTCCTGCAGCAGTTCTGAGTTATTGTCAAGTATGGAAAATCCCCGCAGTTCTA TACTTGTGTTATACTGATGTGATGAAATTAGACCTCATTACAGTTGAAGCTTTTAAGCCT GTACTTTCTTCCAGAAGCTTGAAAGGTTTGGTTAAGAACATTCCCCAGAGCACAGAGATA CTGAAGAAGTTGATGACAACAAATGAGATTCAGAGTAACATTTACACGTGACTCCAAAGA TTGCTTTGTCAAGTATGTGACCCATCCACCCCTTTACGGGGAGCAGCGTGCACTGTTATA TTTATAGGTTACTTTTTTTCAGGGGGGGATTTTGAGGGTGTTAAAAACAGAATAAACTTA TTTTAAGTTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAAGCCGGCCGGGAGGGAGACCATGGCGGCCACGTTCTTCGGCGAGGTGGTGAAGGCG CCTTGCCGAGCCGGGACGGAGGATGAGGAGGAGGAAGAAGAGGGGAGGAGGGAGACGCCC GAGGACAGGGAGGTCCGGCGACAGCTGGCACGAAAGAGGGAGGTTCGGCTCCTTCGAAGA CAGACAAAAACATCTTTGGACGTTTCTCTGCTAGAAAAATATCCTTGCTCCAAGTTCATA ATCGCTATAGGAAATAATGCAGTAGCATTTTTATCATCATTTGTCATGAATTCAGGAGTC TGGGAAGAAGTTGGTTGTGCTAAGCTCTGGAATGAGTGGTGCCGGACAACAGACACTACA CATCTGTCCCCAGCGGAGGCTTTTTGTGTGTTTTATCACCTAAAATCGAATCCCTCGGTT TTGCTCTGTCAGTGCAGTTGCTACGTGGCTGAAGACCAGCAGTTTCAGTGGCTGGAAAAG GTTTTCGGCTCTTGTCCAAAGAAGAACATGCAAGTAACTGTTCTCACCTGTCGACACGTT ACTGACTTTAAAACCTCCGAATCCACCAGCAGCCTTCATACGCCTTTCCTGAGAGCCCTA AAGACACAGAATTTCCGAGAGGCTCCGTGCTGCTCTCTGCTGGAGCAACCAAATATCGTG CATGACCTTCCTGCAGCAGTTCTGAGTTATTGTCAAGTATGGAAAATCCCCGCAGTTCTA TACTTGTGTTATACTGATGTGATGAAATTAGACCTCATTACAGTTGAAGCTTTTAAGCCT GTACTTTCTTCCAGAAGCTTGAAAGGTTTGGTTAAGAACATTCCCCAGAGCACAGAGATA CTGAAGAAGTTGATGACAACAAATGAGATTCAGAGTAACATTTACACGTGACTCCAAAGA TTGCTTTGTCAAGTATGTGACCCATCCACCCCTTTACGGGGAGCAGCGTGCACTGTTATA TTTATAGGTTACTTTTTTTCAGGGGGGGATTTTGAGGGTGTTAAAAACAGAATAAACTTA TTTTAAGTTCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 264-419, gnl|bosTau2|chr1 (89281872-89282027) | |
| 264-419, gnl|Hg17|chr21 (39474234-39474079) | |
| 264-419, gnl|Mm7|chr16 (96324606-96324451) | |
| 479-679, gnl|bosTau2|chr1 (89286865-89287065) | |
| 479-679, gnl|canFam2|chr31 (36271782-36272148) | |
| 479-679, gnl|dasNov1|scaffold_125172 (3385-3058) | |
| 479-679, gnl|echTel1|scaffold_278933 (74903-74526) | |
| 479-679, gnl|galGal2|chr1 (101641706-101642081) | |
| 479-679, gnl|hg17|chr21 (39472095-39472455) | |
| 479-679, gnl|Hg17|chr21 (39472445-39472245) | |
| 479-679, gnl|loxAfr1|scaffold_41883 (32572-32943) | |
| 479-679, gnl|mm7|chr16 (96320132-96320496) | |
| 479-679, gnl|Mm7|chr16 (96320486-96320286) | |
| 479-679, gnl|monDom2|scaffold_29 (3757820-3757434) | |
| 479-679, gnl|oryCun1|scaffold_205520 (42903-43252) | |
| 479-679, gnl|panTro1|chr22 (39508032-39508391) | |
| 479-679, gnl|rheMac2|chr3 (7467574-7467215) | |
| 479-679, gnl|rn3|chr11 (36344119-36344477) | |
| 815-1030, gnl|bosTau2|chr1 (89291593-89291800) | |
| 815-1030, gnl|Hg17|chr21 (39469462-39469255) | |
| 815-1030, gnl|Mm7|chr16 (96316606-96316427) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 264-419, gnl|bosTau2|chr1 (89281872-89282027) | |
| 264-419, gnl|Hg17|chr21 (39474234-39474079) | |
| 264-419, gnl|Mm7|chr16 (96324606-96324451) | |
| 479-679, gnl|bosTau2|chr1 (89286865-89287065) | |
| 479-679, gnl|canFam2|chr31 (36271782-36272148) | |
| 479-679, gnl|dasNov1|scaffold_125172 (3385-3058) | |
| 479-679, gnl|echTel1|scaffold_278933 (74903-74526) | |
| 479-679, gnl|galGal2|chr1 (101641706-101642081) | |
| 479-679, gnl|hg17|chr21 (39472095-39472455) | |
| 479-679, gnl|Hg17|chr21 (39472445-39472245) | |
| 479-679, gnl|loxAfr1|scaffold_41883 (32572-32943) | |
| 479-679, gnl|mm7|chr16 (96320132-96320496) | |
| 479-679, gnl|Mm7|chr16 (96320486-96320286) | |
| 479-679, gnl|monDom2|scaffold_29 (3757820-3757434) | |
| 479-679, gnl|oryCun1|scaffold_205520 (42903-43252) | |
| 479-679, gnl|panTro1|chr22 (39508032-39508391) | |
| 479-679, gnl|rheMac2|chr3 (7467574-7467215) | |
| 479-679, gnl|rn3|chr11 (36344119-36344477) | |
| 815-1030, gnl|bosTau2|chr1 (89291593-89291800) | |
| 815-1030, gnl|Hg17|chr21 (39469462-39469255) | |
| 815-1030, gnl|Mm7|chr16 (96316606-96316427) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| amn (0.417711) | |
| ctl (0.306138) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| ctl (0.306138) | |
| tes (0.207814) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) |