Non-Coding RNA Search

Ss1.1-Lng1-LNG010092F02.5

Sequence:


               
               AGTCTTAAATGAAGGACACACAGCAGCGGACAACAGAAAGGAGTTATGTTCCAGGGCCGA
GTTTTAGGAGGAACAGATTCCAGACCCAATGGATTTAGCGAAGTTCACACATAAGGAATA
TAACTCGCTTAGATCTTCTGACAAATCCTAGTGTTAGTTTTCTGTGTGGAGGAAAGACAC
TTCCTAAACTGTTTGGGAATCTTGGGAATAAAGATTCATTTCCAGTCTGAATAACCATCC
CTTTCTTTAAGAAGTGGCCATTTGGAAGATAGCTGCGAATGTATAGAGACTTTGTGTTGG
GCTGCACTTACGTGTTTATTCAATTCCTGCTTGTTTTCTGGTCTTGCCCAGAATACCTGA
AACCACTAAAGACGATCTGAGCATGACAGGCTTCTGGTCTGGAAGTGGCCGGAGCACCCA
CCCTCCCTCACTGATGAGAGGTCAGCCCACGAAGCTAATGCTTTGGATGATAACTGCCTT
TCCTTTGGACTAGTTCAGACCTGTAAGAATGAGGAAGTTGTTGAAGAGGCTTAAGATCCA
GGTTCTGAAGAAAGTGGTTGGATTTTGTAGGAAGGTCGTTTACTCTCGTGTGACTGGAAG
TGAAGCGCTCAAGCTGCCGTCCTTCAGCTGTCTGCTCTGTGGGGTCTCTACCTTACCCTC
CAGTCTTGTTGGCCTTAGACACTCTGCCATGCAGTTGGAAATGTTGCAGCCCCCGTATCT
GCACATACGTTCCCATGTTTATCAGCTCCCTTCTAGCGGCTTCAGCACCAGTGTGAATTT
CCTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTTAAATGAAGGACACACAGCAGCGGACAACAGAAAGGAGTTATGTTCCAGGGCCGA
GTTTTAGGAGGAACAGATTCCAGACCCAATGGATTTAGCGAAGTTCACACATAAGGAATA
TAACTCGCTTAGATCTTCTGACAAATCCTAGTGTTAGTTTTCTGTGTGGAGGAAAGACAC
TTCCTAAACTGTTTGGGAATCTTGGGAATAAAGATTCATTTCCAGTCTGAATAACCATCC
CTTTCTTTAAGAAGTGGCCATTTGGAAGATAGCTGCGAATGTATAGAGACTTTGTGTTGG
GCTGCACTTACGTGTTTATTCAATTCCTGCTTGTTTTCTGGTCTTGCCCAGAATACCTGA
AACCACTAAAGACGATCTGAGCATGACAGGCTTCTGGTCTGGAAGTGGCCGGAGCACCCA
CCCTCCCTCACTGATGAGAGGTCAGCCCACGAAGCTAATGCTTTGGATGATAACTGCCTT
TCCTTTGGACTAGTTCAGACCTGTAAGAATGAGGAAGTTGTTGAAGAGGCTTAAGATCCA
GGTTCTGAAGAAAGTGGTTGGATTTTGTAGGAAGGTCGTTTACTCTCGTGTGACTGGAAG
TGAAGCGCTCAAGCTGCCGTCCTTCAGCTGTCTGCTCTGTGGGGTCTCTACCTTACCCTC
CAGTCTTGTTGGCCTTAGACACTCTGCCATGCAGTTGGAAATGTTGCAGCCCCCGTATCT
GCACATACGTTCCCATGTTTATCAGCTCCCTTCTAGCGGCTTCAGCACCAGTGTGAATTT
CCTTTTTTTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-789, gnl|bosTau2|chr20 (24082171-24081386)
               

               
               1-789, gnl|Hg17|chr10 (126514289-126515092)
               

               
               1-789, gnl|Mm7|chr7 (129289098-129289871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-789, gnl|bosTau2|chr20 (24082171-24081386)
               

               
               1-789, gnl|Hg17|chr10 (126514289-126515092)
               

               
               1-789, gnl|Mm7|chr7 (129289098-129289871)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)

	1-789, gnl\|bosTau2\|chr20 (24082171-24081386)
	1-789, gnl\|Hg17\|chr10 (126514289-126515092)
	1-789, gnl\|Mm7\|chr7 (129289098-129289871)

	cmu (0.186393)
	fbs (0.175346)
	mcp (0.170648)
	ssp (0.13552)
	ova (0.129132)