Non-Coding RNA Search

Ss1.1-Lng1-LNG010093A10.5

Sequence:


               
               TGTGCCTTCTTGGGCCCCACACCCCAGGGCAGGGCTGGGCTGCCTTTGTGAGGGGCGGGG
GGGTATCTGGACTCGAATGTACTTCTGGCCATCTTGTCCCCCTGAGCCTGGCTCCCCAGC
CCCCTCACCTATGAGGACTATTCTGTGCCTCCACCGCCAGAGCCCTGATCTTGGCTGACT
GGGCCTGGGAGTGGACCTCCTGCCTCCCTTCCCAGCCCAGATGCCATTTGGAAAACCACT
GACACCCGCCATATCGTTTGATCTACTCCAGAGCCCCTTGGAGCAGCCAAAAAACAAAGT
GTGCCACCCCCAAAAAAGTGTGCCCAACGACCAGATCAAGGAATTCAACTCCCTGGCATG
TCCTGAACCCCTTCCCCAGGTTGTGCCCAGGCTCCGGGGGCCCTTGGCAGAGCCAAACAC
GTGCAGATGGGGAGGGTCCCAGGAATAGGCCAGACCCAGGATCCCCCCACATCCTAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCCTTCTTGGGCCCCACACCCCAGGGCAGGGCTGGGCTGCCTTTGTGAGGGGCGGGG
GGGTATCTGGACTCGAATGTACTTCTGGCCATCTTGTCCCCCTGAGCCTGGCTCCCCAGC
CCCCTCACCTATGAGGACTATTCTGTGCCTCCACCGCCAGAGCCCTGATCTTGGCTGACT
GGGCCTGGGAGTGGACCTCCTGCCTCCCTTCCCAGCCCAGATGCCATTTGGAAAACCACT
GACACCCGCCATATCGTTTGATCTACTCCAGAGCCCCTTGGAGCAGCCAAAAAACAAAGT
GTGCCACCCCCAAAAAAGTGTGCCCAACGACCAGATCAAGGAATTCAACTCCCTGGCATG
TCCTGAACCCCTTCCCCAGGTTGTGCCCAGGCTCCGGGGGCCCTTGGCAGAGCCAAACAC
GTGCAGATGGGGAGGGTCCCAGGAATAGGCCAGACCCAGGATCCCCCCACATCCTAGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-268, - strand, RNAz p=0.987205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-268, - strand, RNAz p=0.987205

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               5-305, gnl|bosTau2|chr13 (48601353-48601650)
               

               
               5-305, gnl|Hg17|chr20 (36191956-36191650)
               


               
               312-480, gnl|bosTau2|chr13 (48601638-48601807)
               

               
               312-480, gnl|canFam2|chr24 (29603354-29603580)
               

               
               312-480, gnl|dasNov1|scaffold_14836 (73925-73701)
               

               
               312-480, gnl|hg17|chr20 (36191494-36191750)
               

               
               312-480, gnl|Hg17|chr20 (36191667-36191507)
               

               
               312-480, gnl|loxAfr1|scaffold_3130 (26610-26877)
               

               
               312-480, gnl|mm7|chr2 (157858314-157858445)
               

               
               312-480, gnl|panTro1|chr21 (38567572-38567828)
               

               
               312-480, gnl|rn3|chr3 (148739791-148739913)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-305, gnl|bosTau2|chr13 (48601353-48601650)
               

               
               5-305, gnl|Hg17|chr20 (36191956-36191650)
               


               
               312-480, gnl|bosTau2|chr13 (48601638-48601807)
               

               
               312-480, gnl|canFam2|chr24 (29603354-29603580)
               

               
               312-480, gnl|dasNov1|scaffold_14836 (73925-73701)
               

               
               312-480, gnl|hg17|chr20 (36191494-36191750)
               

               
               312-480, gnl|Hg17|chr20 (36191667-36191507)
               

               
               312-480, gnl|loxAfr1|scaffold_3130 (26610-26877)
               

               
               312-480, gnl|mm7|chr2 (157858314-157858445)
               

               
               312-480, gnl|panTro1|chr21 (38567572-38567828)
               

               
               312-480, gnl|rn3|chr3 (148739791-148739913)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cty (0.10408)

	5-305, gnl\|bosTau2\|chr13 (48601353-48601650)
	5-305, gnl\|Hg17\|chr20 (36191956-36191650)

	312-480, gnl\|bosTau2\|chr13 (48601638-48601807)
	312-480, gnl\|canFam2\|chr24 (29603354-29603580)
	312-480, gnl\|dasNov1\|scaffold_14836 (73925-73701)
	312-480, gnl\|hg17\|chr20 (36191494-36191750)
	312-480, gnl\|Hg17\|chr20 (36191667-36191507)
	312-480, gnl\|loxAfr1\|scaffold_3130 (26610-26877)
	312-480, gnl\|mm7\|chr2 (157858314-157858445)
	312-480, gnl\|panTro1\|chr21 (38567572-38567828)
	312-480, gnl\|rn3\|chr3 (148739791-148739913)