Ss1.1-Lng1-LNG010093E09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACATGGCGCGCGAGCTGCGGACGCTGTTGCTGTGGGGCCACCGCCTGCGGGCGCCGGCG CTGGCTGCCGCCCGGGGAGGAAACTCCGTTTTGTGTCCTCGGAGGCCCCCAGCCCAGTCC TGGCATCCCAGGCAATGCCTGGCCTCCAGCTTCCACGCTGGACGGCCATTCAGCTCTCAG GCTGCCGAGGACCGGAAGGAGGAGCCGCCGCACTGCATCATCAGCAGCTCGGAGACCGTG CAGGGTTCTGTTTCCAAACATGAGTTCCAGGCTGAGACAAAGAAGCTTCTGGACATCGTC GCCCGTTCCTTATACTCAGAAAAAGAGGTGTTTATACGGGAGCTGATCTCCAATGCCAGC GACGCCTTGGAAAAGCTGCGTCACAAGCTGGTGTCTGAAGGCCAAACGCTGCCAGAAATG GAGATTCACTTGCAGACCGACTCCGAGAAGGGCACCATTACAATCCAGGACACGGGCGTC GGGATGACACGAGAGGAGCTGGTGTCCAACCTGGGGACCATCGCCAGGTCAGGGTCGAAG GCCTTTCTGGACGCGCTGCAGAACCAGGCGGAGGCCAGCGGCAAGATCATCGGCCAGTTC GGCGTGGGTTTCTACTCAGCCTTCATGGTGGCCGACAAGGTCGAGGTCTATTCCCGCTCG GTGGATGCGGGCAGCCCTGGGTTCCAGTGGCTTTCAGACGGCTCTGGCGTCTTTGAAATT GCTGAAGCTGCAAGGAGTCAGAACGGAACCAAAGTCATCATCCACCTCAAGGCGGACAGC AGAGAGTTCGCCCACGAGGCCCGGGTTCGAGACGTGGTGACAAAGTACAGCAACTTCGTC AGCTTCCCTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACATGGCGCGCGAGCTGCGGACGCTGTTGCTGTGGGGCCACCGCCTGCGGGCGCCGGCG CTGGCTGCCGCCCGGGGAGGAAACTCCGTTTTGTGTCCTCGGAGGCCCCCAGCCCAGTCC TGGCATCCCAGGCAATGCCTGGCCTCCAGCTTCCACGCTGGACGGCCATTCAGCTCTCAG GCTGCCGAGGACCGGAAGGAGGAGCCGCCGCACTGCATCATCAGCAGCTCGGAGACCGTG CAGGGTTCTGTTTCCAAACATGAGTTCCAGGCTGAGACAAAGAAGCTTCTGGACATCGTC GCCCGTTCCTTATACTCAGAAAAAGAGGTGTTTATACGGGAGCTGATCTCCAATGCCAGC GACGCCTTGGAAAAGCTGCGTCACAAGCTGGTGTCTGAAGGCCAAACGCTGCCAGAAATG GAGATTCACTTGCAGACCGACTCCGAGAAGGGCACCATTACAATCCAGGACACGGGCGTC GGGATGACACGAGAGGAGCTGGTGTCCAACCTGGGGACCATCGCCAGGTCAGGGTCGAAG GCCTTTCTGGACGCGCTGCAGAACCAGGCGGAGGCCAGCGGCAAGATCATCGGCCAGTTC GGCGTGGGTTTCTACTCAGCCTTCATGGTGGCCGACAAGGTCGAGGTCTATTCCCGCTCG GTGGATGCGGGCAGCCCTGGGTTCCAGTGGCTTTCAGACGGCTCTGGCGTCTTTGAAATT GCTGAAGCTGCAAGGAGTCAGAACGGAACCAAAGTCATCATCCACCTCAAGGCGGACAGC AGAGAGTTCGCCCACGAGGCCCGGGTTCGAGACGTGGTGACAAAGTACAGCAACTTCGTC AGCTTCCCTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 79-445, - strand, RNAz p=0.624865 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-445, - strand, RNAz p=0.624865 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 79-246, gnl|bosTau2|chr25 (601727-601558) | |
| 79-246, gnl|Hg17|chr16 (3680987-3680827) | |
| 79-246, gnl|Mm7|chr16 (3740586-3740420) | |
| 326-469, gnl|bosTau2|chr25 (599598-599455) | |
| 326-469, gnl|canFam2|chr6 (40619405-40619241) | |
| 326-469, gnl|danRer3|chrNA (36696412-36696238) | |
| 326-469, gnl|dasNov1|scaffold_22866 (2806-2642) | |
| 326-469, gnl|echTel1|scaffold_284105 (77204-77375) | |
| 326-469, gnl|fr1|chrUn (56326707-56326871) | |
| 326-469, gnl|galGal2|chr14 (14336035-14336192) | |
| 326-469, gnl|hg17|chr16 (3675990-3676165) | |
| 326-469, gnl|Hg17|chr16 (3676140-3675997) | |
| 326-469, gnl|mm7|chr16 (3736790-3736964) | |
| 326-469, gnl|Mm7|chr16 (3736940-3736797) | |
| 326-469, gnl|monDom2|scaffold_49 (5287383-5287208) | |
| 326-469, gnl|oryCun1|scaffold_174231 (58094-57918) | |
| 326-469, gnl|panTro1|chr18 (3541553-3541728) | |
| 326-469, gnl|rheMac2|chr20 (3814441-3814616) | |
| 326-469, gnl|rn3|chr10 (11739270-11739096) | |
| 326-469, gnl|tetNig1|chr3 (9710298-9710451) | |
| 326-469, gnl|xenTro1|scaffold_12 (2733917-2733749) | |
| 539-701, gnl|bosTau2|chr25 (596037-595875) | |
| 539-701, gnl|Hg17|chr16 (3667662-3667500) | |
| 539-701, gnl|Mm7|chr16 (3732484-3732322) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-246, gnl|bosTau2|chr25 (601727-601558) | |
| 79-246, gnl|Hg17|chr16 (3680987-3680827) | |
| 79-246, gnl|Mm7|chr16 (3740586-3740420) | |
| 326-469, gnl|bosTau2|chr25 (599598-599455) | |
| 326-469, gnl|canFam2|chr6 (40619405-40619241) | |
| 326-469, gnl|danRer3|chrNA (36696412-36696238) | |
| 326-469, gnl|dasNov1|scaffold_22866 (2806-2642) | |
| 326-469, gnl|echTel1|scaffold_284105 (77204-77375) | |
| 326-469, gnl|fr1|chrUn (56326707-56326871) | |
| 326-469, gnl|galGal2|chr14 (14336035-14336192) | |
| 326-469, gnl|hg17|chr16 (3675990-3676165) | |
| 326-469, gnl|Hg17|chr16 (3676140-3675997) | |
| 326-469, gnl|mm7|chr16 (3736790-3736964) | |
| 326-469, gnl|Mm7|chr16 (3736940-3736797) | |
| 326-469, gnl|monDom2|scaffold_49 (5287383-5287208) | |
| 326-469, gnl|oryCun1|scaffold_174231 (58094-57918) | |
| 326-469, gnl|panTro1|chr18 (3541553-3541728) | |
| 326-469, gnl|rheMac2|chr20 (3814441-3814616) | |
| 326-469, gnl|rn3|chr10 (11739270-11739096) | |
| 326-469, gnl|tetNig1|chr3 (9710298-9710451) | |
| 326-469, gnl|xenTro1|scaffold_12 (2733917-2733749) | |
| 539-701, gnl|bosTau2|chr25 (596037-595875) | |
| 539-701, gnl|Hg17|chr16 (3667662-3667500) | |
| 539-701, gnl|Mm7|chr16 (3732484-3732322) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| eep (0.122564) | |
| eje (0.0988338) |