Non-Coding RNA Search

Ss1.1-Lng1-LNG010094B06.5

Sequence:


               
               GCCTGCAATGAGATTTCATTCTCTACATTTAAAGGACATCCTTTCTGAGCTGCTGTGAAT
ACATTTGGAATGATACTGTATATTTTCATCTAATGGAGAATTAGCTGTACCTTGAATAAG
GATTGCTGCACTGGACGACTTGAGAATATTAGTCACAATGTCATCCAACAGGAGTCAGAA
TCCCCATGGACTGAAGCAGATTGGCCTTGACCAGATCTGGGACGACCTCAGAGCTGGAAT
CCAGCAAGTGTATACCAGACAGAGTATGGCGAAGTCCAGATACATGGAACTCTACACTCA
TGTTTATAACTACTGCACAAGTGTTCACCAGTCAAACCAAGCACGAGGTGCTGGTGTCCC
TCCTTCTAAATCAAAAAAAGGACAGACGCCTGGAGGAGCTCAGTTTGTTGGCTTGGAATT
ATACAAACGACTTAAAGAATTTTTGAAGAATTACTTGACAAATCTTCTTAAGGACGGAGA
AGATCTGATGGATGAGAGTGTACTGAAGTTCTACACTCAGCAGTGGGAAGATTACCGATT
TTCAAGCAAAGTGCTGAATGGGATTTGTGCCTACCTCAATAGACATTGGGTTCGCCGCGA
ATGCGACGAAGGACGGAAAGGAATCTATGAAATCTATTCTCTTGCATTGGTGACTTGGAG
AGATTGTCTTTTCAGGCCACTGAATAAACAGGTAACAAATGCTGTTTTAAAACTAATCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGCAATGAGATTTCATTCTCTACATTTAAAGGACATCCTTTCTGAGCTGCTGTGAAT
ACATTTGGAATGATACTGTATATTTTCATCTAATGGAGAATTAGCTGTACCTTGAATAAG
GATTGCTGCACTGGACGACTTGAGAATATTAGTCACAATGTCATCCAACAGGAGTCAGAA
TCCCCATGGACTGAAGCAGATTGGCCTTGACCAGATCTGGGACGACCTCAGAGCTGGAAT
CCAGCAAGTGTATACCAGACAGAGTATGGCGAAGTCCAGATACATGGAACTCTACACTCA
TGTTTATAACTACTGCACAAGTGTTCACCAGTCAAACCAAGCACGAGGTGCTGGTGTCCC
TCCTTCTAAATCAAAAAAAGGACAGACGCCTGGAGGAGCTCAGTTTGTTGGCTTGGAATT
ATACAAACGACTTAAAGAATTTTTGAAGAATTACTTGACAAATCTTCTTAAGGACGGAGA
AGATCTGATGGATGAGAGTGTACTGAAGTTCTACACTCAGCAGTGGGAAGATTACCGATT
TTCAAGCAAAGTGCTGAATGGGATTTGTGCCTACCTCAATAGACATTGGGTTCGCCGCGA
ATGCGACGAAGGACGGAAAGGAATCTATGAAATCTATTCTCTTGCATTGGTGACTTGGAG
AGATTGTCTTTTCAGGCCACTGAATAAACAGGTAACAAATGCTGTTTTAAAACTAATCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|42564212|gb|AAS20600.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42564212|gb|AAS20600.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-297, gnl|bosTau2|chr4 (66310768-66310471)
               

               
               1-297, gnl|Hg17|chr7 (147864706-147865002)
               

               
               1-297, gnl|Mm7|chr6 (47521444-47521740)
               


               
               366-720, gnl|bosTau2|chr4 (14174791-14174440)
               

               
               366-720, gnl|Hg17|chr5 (127150431-127150082)
               

               
               366-720, gnl|Mm7|chr6 (47531831-47538423)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-297, gnl|bosTau2|chr4 (66310768-66310471)
               

               
               1-297, gnl|Hg17|chr7 (147864706-147865002)
               

               
               1-297, gnl|Mm7|chr6 (47521444-47521740)
               


               
               366-720, gnl|bosTau2|chr4 (14174791-14174440)
               

               
               366-720, gnl|Hg17|chr5 (127150431-127150082)
               

               
               366-720, gnl|Mm7|chr6 (47531831-47538423)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-297, gnl\|bosTau2\|chr4 (66310768-66310471)
	1-297, gnl\|Hg17\|chr7 (147864706-147865002)
	1-297, gnl\|Mm7\|chr6 (47521444-47521740)

	366-720, gnl\|bosTau2\|chr4 (14174791-14174440)
	366-720, gnl\|Hg17\|chr5 (127150431-127150082)
	366-720, gnl\|Mm7\|chr6 (47531831-47538423)