Ss1.1-Lng1-LNG010094E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAGGAGTTTGAGTGCTATCCACCAGGCATGAAAGTCCAAGTGCGGTATGGACGAGGG AAAAATCAAAAAATGTATGAAGCTAGTATTAAAGATTCTGATGTCGAAGGTGGAGAGGTC CTTTACTTGGTGCATTACTGCGGATGGAATGTGAGATACGATGAATGGATTAAAGCAGAT AAAATAGTAAGACCTGCTGATAAAAATGTGCCTAAGATAAAACATCGCAAGAAAATAAAG AATAAATTAGATAAAGAAAAAGACAAAGATGAAAAGTATTCTCCTAAAAACTGTAAACTT CGGCGCTTGTCAAAACCACCATTTCAGACAAATTCATCTCCTGAAGTGGTATCCAAATTG GATCTTACTGATGCCAAAAACTCTGATACAGGTCATATTAAATCCATAGAAATCACTTCT ATCCTTAATGGACTTGAAGCTTCTGAAAGTTCTGCTGAAGACAGTGAGCAAGAGGATGAG ACAAGTGTTCAAGACATAGATAATAATGGCAAAGAAGAATCTACGATTGATCACTTGACC CTCAACAGAAATGATCTTATTTCAAAAGAGGAACAGAACAGTTCATCTTTGCTAGAAGAA AACAAAACCCATGCAGATTTGGTAATAGCCAAACCTGTGTCAAAATCTCCAGAAAGATTA AGAAAAGATATAGAAGGATTATCTGAAGATACTGATTATGAAGAAGAAGATGAGGTCACA AAAAAGAGAAAGGATGTCAAGAAGGACAGCACAGATAAATCTTCAAAGCCTCCAGTGAAA CGTGGTAAGAGAAGGTATGGCAATACCGAGGAGTGTTTAAAAACTGTATCACCTGGCAAA AAGGAAGAGAAGGTCAAGAACAAAGAATCCCTTTGCATAGAGAACAGTAGCAACAGCTCT TCAGATGATGATGAAGATGAAAAATCCAAAGCAAAGATGACACCAACTAAGAAATACAAC GGTTTGGAAGAAAAAAGAAAGTCTCTACGGACAACTGGTTTCTATTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAGGAGTTTGAGTGCTATCCACCAGGCATGAAAGTCCAAGTGCGGTATGGACGAGGG AAAAATCAAAAAATGTATGAAGCTAGTATTAAAGATTCTGATGTCGAAGGTGGAGAGGTC CTTTACTTGGTGCATTACTGCGGATGGAATGTGAGATACGATGAATGGATTAAAGCAGAT AAAATAGTAAGACCTGCTGATAAAAATGTGCCTAAGATAAAACATCGCAAGAAAATAAAG AATAAATTAGATAAAGAAAAAGACAAAGATGAAAAGTATTCTCCTAAAAACTGTAAACTT CGGCGCTTGTCAAAACCACCATTTCAGACAAATTCATCTCCTGAAGTGGTATCCAAATTG GATCTTACTGATGCCAAAAACTCTGATACAGGTCATATTAAATCCATAGAAATCACTTCT ATCCTTAATGGACTTGAAGCTTCTGAAAGTTCTGCTGAAGACAGTGAGCAAGAGGATGAG ACAAGTGTTCAAGACATAGATAATAATGGCAAAGAAGAATCTACGATTGATCACTTGACC CTCAACAGAAATGATCTTATTTCAAAAGAGGAACAGAACAGTTCATCTTTGCTAGAAGAA AACAAAACCCATGCAGATTTGGTAATAGCCAAACCTGTGTCAAAATCTCCAGAAAGATTA AGAAAAGATATAGAAGGATTATCTGAAGATACTGATTATGAAGAAGAAGATGAGGTCACA AAAAAGAGAAAGGATGTCAAGAAGGACAGCACAGATAAATCTTCAAAGCCTCCAGTGAAA CGTGGTAAGAGAAGGTATGGCAATACCGAGGAGTGTTTAAAAACTGTATCACCTGGCAAA AAGGAAGAGAAGGTCAAGAACAAAGAATCCCTTTGCATAGAGAACAGTAGCAACAGCTCT TCAGATGATGATGAAGATGAAAAATCCAAAGCAAAGATGACACCAACTAAGAAATACAAC GGTTTGGAAGAAAAAAGAAAGTCTCTACGGACAACTGGTTTCTATTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 477-756, - strand, RNAz p=0.986094 | |
| 797-916, - strand, RNAz p=0.729416 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 477-756, - strand, RNAz p=0.986094 | |
| 797-916, - strand, RNAz p=0.729416 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 26-171, gnl|bosTau2|chr10 (48024206-48024059) | |
| 26-171, gnl|canFam2|chr8 (36740991-36741178) | |
| 26-171, gnl|danRer3|chr17 (8541330-8541517) | |
| 26-171, gnl|dasNov1|scaffold_16577 (42377-42564) | |
| 26-171, gnl|echTel1|scaffold_288426 (53144-52957) | |
| 26-171, gnl|fr1|chrUn (93221256-93221078) | |
| 26-171, gnl|galGal2|chr5 (51973496-51973309) | |
| 26-171, gnl|hg17|chr14 (57890145-57890332) | |
| 26-171, gnl|Hg17|chr14 (57890197-57890343) | |
| 26-171, gnl|loxAfr1|scaffold_30744 (234-50) | |
| 26-171, gnl|mm7|chr12 (69013689-69013876) | |
| 26-171, gnl|Mm7|chr12 (69013741-69013876) | |
| 26-171, gnl|monDom2|scaffold_8 (70400886-70401073) | |
| 26-171, gnl|oryCun1|scaffold_213913 (31863-32050) | |
| 26-171, gnl|panTro1|chr15 (57448529-57448716) | |
| 26-171, gnl|rheMac2|chr7 (121370195-121370382) | |
| 26-171, gnl|rn3|chr6 (93188108-93188295) | |
| 26-171, gnl|tetNig1|chrUn_random (83024945-83025107) | |
| 26-171, gnl|xenTro1|scaffold_33 (1250857-1250670) | |
| 438-1008, gnl|bosTau2|chr28 (2284900-2285470) | |
| 438-1008, gnl|Hg17|chr1 (231672151-231671587) | |
| 438-1008, gnl|Mm7|chr13 (13552636-13553206) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-171, gnl|bosTau2|chr10 (48024206-48024059) | |
| 26-171, gnl|canFam2|chr8 (36740991-36741178) | |
| 26-171, gnl|danRer3|chr17 (8541330-8541517) | |
| 26-171, gnl|dasNov1|scaffold_16577 (42377-42564) | |
| 26-171, gnl|echTel1|scaffold_288426 (53144-52957) | |
| 26-171, gnl|fr1|chrUn (93221256-93221078) | |
| 26-171, gnl|galGal2|chr5 (51973496-51973309) | |
| 26-171, gnl|hg17|chr14 (57890145-57890332) | |
| 26-171, gnl|Hg17|chr14 (57890197-57890343) | |
| 26-171, gnl|loxAfr1|scaffold_30744 (234-50) | |
| 26-171, gnl|mm7|chr12 (69013689-69013876) | |
| 26-171, gnl|Mm7|chr12 (69013741-69013876) | |
| 26-171, gnl|monDom2|scaffold_8 (70400886-70401073) | |
| 26-171, gnl|oryCun1|scaffold_213913 (31863-32050) | |
| 26-171, gnl|panTro1|chr15 (57448529-57448716) | |
| 26-171, gnl|rheMac2|chr7 (121370195-121370382) | |
| 26-171, gnl|rn3|chr6 (93188108-93188295) | |
| 26-171, gnl|tetNig1|chrUn_random (83024945-83025107) | |
| 26-171, gnl|xenTro1|scaffold_33 (1250857-1250670) | |
| 438-1008, gnl|bosTau2|chr28 (2284900-2285470) | |
| 438-1008, gnl|Hg17|chr1 (231672151-231671587) | |
| 438-1008, gnl|Mm7|chr13 (13552636-13553206) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.124347) |