Ss1.1-Lng1-LNG010096C10.5
|
TGAAGATGGCGTCGGGTAGCGGGGCAAAAAACTTGGACTTTCGCCGAAAGTGGGACAAAG
ATGAATATGAGAAGCTTGCGGAGAAGAGGCTCACAGAAGAGAGAGAAAAGAAGGATGGAA
AGCCCGTGCAGCCAGTCAAGCGAGAGCTTCTCCGGCATAGAGATTACAAGGTGGACCTGG
AATCCAAGCTCGGGAAGACAATTGTCATTACCAAGACTACCCCACAGTCTGAGATGGGAG
GGTATTACTGCAATGTCTGTGACTGTGTAGTGAAAGACTCTATCAACTTCCTGGATCACA
TTAATGGAAAGAAACATCAACGAAACCTAGGCATGTCTATGCGTGTGGAACGTTCTACCT
TGGATCAGGTGAAGAAACGTTTTGAAGTCAACAAGAAGAAGATGGAAGAGAAGCAGAAGG
ATTATGATTTTGAGGAAAGAATGAAGGAACTCAGAGAAGAGGAGGAAAAGGCCAAAGCCT
ACAAGAAAGAGAAACAGAAGGAGAAGAAAAGGAGGGCCGAGGAGGACTTGACGTTTGAGG
AGGATGATGAGATGGCAGCTGTGATGGGCTTCTCTGGCTTTGGTTCCACAAAGAAGAGTT
ACTGAGGCTTGCTGTGCTTGGCTCTTTGCTGGGCCTAATTTTGTGTGTGTGGGCATCAGT
TTTCGGGAGGTACTCGGGAAAGTGTAGCAATGGGGAGGGCTAGAGGGGATTGTGGTTTCC
CTCTGCCTTGGGAGAGAGCCCGGGATGCAGAGGTAATGCTGTGGCATATGCCTCCAGCCT
CAGTGTATCCCTGGAGTCCCAGGACCTCTGACCATCTGAGTTCCCAATAAAGAAAAACCT
CCTCTTCAGAGGCTGCTTTCCCGAAACTCCCCCTGCATCTTTCTCTCTTCATCTGTCCGG
TCTCCTATCTGAACATCCTACATTTATCCTGTGTTCTGCCTTTGTTTTTATTTTGACTCT
TGCTTAGCCTACAGCAGAAGGGTTCTCTGGGTCCCCCATTTCCAGCTGATAGCATACCTT
TGATCAACCCCCCTTCCCCATTCTCTCCATCTCTCCCAGCCCCCTGTGGTTCTCTGGCCA
CCTGTGCATGCATGGGTCCGTGGTGTGAGCGGGTATGTGTGCATGAATCTGTCACAGAGG
GAGCCTGAGCTAGCGCCTCAGAGCATTGCTGCCTTGGGGCCTGATGTGCACAGGTTCCTC
AGAGCATGTAACAGAACATTAAATGGGATGAGTGTTTGGTGTGGTTTTTTTGTCTGGTGA
GTTTTTTAACCTTTGTTCTTCGTATGTAGATTGTTCAGCTTTTCCTGATTGTTTCATTTT
ATTGAGGATTACTCTGTTTTTTTTCTTCCTTATAAGCAGGCTCTTGGAAGAACCTGTTTG
ATGCAAAAAAGAAAAAGGAGAAAACCTCATATTCATATGGGAGCCCTTGGGTCTCAGAGG
CTGTTCGACATGATAATAAATGGCATTGACTGGGCCTATTTCACATTTAGTGGGAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAAGATGGCGTCGGGTAGCGGGGCAAAAAACTTGGACTTTCGCCGAAAGTGGGACAAAG
ATGAATATGAGAAGCTTGCGGAGAAGAGGCTCACAGAAGAGAGAGAAAAGAAGGATGGAA
AGCCCGTGCAGCCAGTCAAGCGAGAGCTTCTCCGGCATAGAGATTACAAGGTGGACCTGG
AATCCAAGCTCGGGAAGACAATTGTCATTACCAAGACTACCCCACAGTCTGAGATGGGAG
GGTATTACTGCAATGTCTGTGACTGTGTAGTGAAAGACTCTATCAACTTCCTGGATCACA
TTAATGGAAAGAAACATCAACGAAACCTAGGCATGTCTATGCGTGTGGAACGTTCTACCT
TGGATCAGGTGAAGAAACGTTTTGAAGTCAACAAGAAGAAGATGGAAGAGAAGCAGAAGG
ATTATGATTTTGAGGAAAGAATGAAGGAACTCAGAGAAGAGGAGGAAAAGGCCAAAGCCT
ACAAGAAAGAGAAACAGAAGGAGAAGAAAAGGAGGGCCGAGGAGGACTTGACGTTTGAGG
AGGATGATGAGATGGCAGCTGTGATGGGCTTCTCTGGCTTTGGTTCCACAAAGAAGAGTT
ACTGAGGCTTGCTGTGCTTGGCTCTTTGCTGGGCCTAATTTTGTGTGTGTGGGCATCAGT
TTTCGGGAGGTACTCGGGAAAGTGTAGCAATGGGGAGGGCTAGAGGGGATTGTGGTTTCC
CTCTGCCTTGGGAGAGAGCCCGGGATGCAGAGGTAATGCTGTGGCATATGCCTCCAGCCT
CAGTGTATCCCTGGAGTCCCAGGACCTCTGACCATCTGAGTTCCCAATAAAGAAAAACCT
CCTCTTCAGAGGCTGCTTTCCCGAAACTCCCCCTGCATCTTTCTCTCTTCATCTGTCCGG
TCTCCTATCTGAACATCCTACATTTATCCTGTGTTCTGCCTTTGTTTTTATTTTGACTCT
TGCTTAGCCTACAGCAGAAGGGTTCTCTGGGTCCCCCATTTCCAGCTGATAGCATACCTT
TGATCAACCCCCCTTCCCCATTCTCTCCATCTCTCCCAGCCCCCTGTGGTTCTCTGGCCA
CCTGTGCATGCATGGGTCCGTGGTGTGAGCGGGTATGTGTGCATGAATCTGTCACAGAGG
GAGCCTGAGCTAGCGCCTCAGAGCATTGCTGCCTTGGGGCCTGATGTGCACAGGTTCCTC
AGAGCATGTAACAGAACATTAAATGGGATGAGTGTTTGGTGTGGTTTTTTTGTCTGGTGA
GTTTTTTAACCTTTGTTCTTCGTATGTAGATTGTTCAGCTTTTCCTGATTGTTTCATTTT
ATTGAGGATTACTCTGTTTTTTTTCTTCCTTATAAGCAGGCTCTTGGAAGAACCTGTTTG
ATGCAAAAAAGAAAAAGGAGAAAACCTCATATTCATATGGGAGCCCTTGGGTCTCAGAGG
CTGTTCGACATGATAATAAATGGCATTGACTGGGCCTATTTCACATTTAGTGGGAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
117-243, gnl|bosTau2|chr7 (30457730-30457604) |
|
117-243, gnl|canFam2|chr2 (38703351-38703505) |
|
117-243, gnl|danRer3|chr21 (17435175-17435035) |
|
117-243, gnl|dasNov1|scaffold_23651 (10643-10797) |
|
117-243, gnl|echTel1|scaffold_292061 (80629-80475) |
|
117-243, gnl|fr1|chrUn (294113822-294113686) |
|
117-243, gnl|galGal2|chr13 (226834-226682) |
|
117-243, gnl|hg17|chr5 (140061765-140061919) |
|
117-243, gnl|Hg17|chr5 (140061774-140061900) |
|
117-243, gnl|mm7|chr18 (37171237-37171386) |
|
117-243, gnl|Mm7|chr18 (37171241-37171367) |
|
117-243, gnl|monDom2|scaffold_6 (68078740-68078586) |
|
117-243, gnl|oryCun1|scaffold_212741 (46198-46352) |
|
117-243, gnl|panTro1|chr4 (146680277-146680431) |
|
117-243, gnl|rheMac2|chr6 (137103645-137103799) |
|
117-243, gnl|rn3|chr18 (29521016-29521165) |
|
117-243, gnl|tetNig1|chr7 (11042676-11042535) |
|
117-243, gnl|xenTro1|scaffold_336 (1082819-1082971) |
| |
|
460-1496, gnl|bosTau2|chr7 (30455071-30454029) |
|
460-1496, gnl|Hg17|chr5 (140065380-140066445) |
|
460-1496, gnl|Mm7|chr18 (37174078-37175085) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
117-243, gnl|bosTau2|chr7 (30457730-30457604) |
|
117-243, gnl|canFam2|chr2 (38703351-38703505) |
|
117-243, gnl|danRer3|chr21 (17435175-17435035) |
|
117-243, gnl|dasNov1|scaffold_23651 (10643-10797) |
|
117-243, gnl|echTel1|scaffold_292061 (80629-80475) |
|
117-243, gnl|fr1|chrUn (294113822-294113686) |
|
117-243, gnl|galGal2|chr13 (226834-226682) |
|
117-243, gnl|hg17|chr5 (140061765-140061919) |
|
117-243, gnl|Hg17|chr5 (140061774-140061900) |
|
117-243, gnl|mm7|chr18 (37171237-37171386) |
|
117-243, gnl|Mm7|chr18 (37171241-37171367) |
|
117-243, gnl|monDom2|scaffold_6 (68078740-68078586) |
|
117-243, gnl|oryCun1|scaffold_212741 (46198-46352) |
|
117-243, gnl|panTro1|chr4 (146680277-146680431) |
|
117-243, gnl|rheMac2|chr6 (137103645-137103799) |
|
117-243, gnl|rn3|chr18 (29521016-29521165) |
|
117-243, gnl|tetNig1|chr7 (11042676-11042535) |
|
117-243, gnl|xenTro1|scaffold_336 (1082819-1082971) |
| |
|
460-1496, gnl|bosTau2|chr7 (30455071-30454029) |
|
460-1496, gnl|Hg17|chr5 (140065380-140066445) |
|
460-1496, gnl|Mm7|chr18 (37174078-37175085) |
|
ece (0.45861) |
|
amn (0.417711) |
|
elu (0.385356) |
|
nep (0.36785) |
|
fli (0.202881) |
|
eje (0.197668) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fco (0.157208) |
|
lnt (0.142308) |
|
cov (0.132153) |
|
ova (0.129132) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
ece (0.45861) |
|
amn (0.417711) |
|
elu (0.385356) |
|
nep (0.36785) |
|
fli (0.202881) |
|
eje (0.197668) |
|
sin (0.174948) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
nco (0.161734) |
|
fco (0.157208) |
|
lnt (0.142308) |
|
cov (0.132153) |
|
ova (0.129132) |
|
bla (0.124347) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
jca (0.11396) |
