Non-Coding RNA Search

Ss1.1-Lng1-LNG010096F07.5

Sequence:


               
               AGTAGCTGCGGGTAGGATGGGTCCTCGCCGCCGGCTTCGCTGAGACTTGCTCGCGTGGGC
TGCCCTCGGCGGGCCCGCAGTGGCCGCGGCGGCATGAAGGGCGCTCTGGGGAGTCCTGTG
GCCGCGGCCGCCGCAGGCGCCGTGATGCAGGAGAGTTTCGGCTGCGTAGTGGCCAACCGC
TTCCACCAGCTGCTGGACGACGAGTCAGACCCGTTCGACATCCTGCGCGAGGCCGAGCGC
CGGCGCCAGCAGCAGCTGCAGCGCAAGAGGCGCGACGAGGCGGCGGCGGCGGTGGCAGCG
GGGACCGGCAACCGCGGTGGCAGGAGCCCGGCTGGGGCTTCGGGCCACAGACCCGGCGCG
GGCGGCGGCCGGAGGGAGTCCCAGAAGGAGCGCAAGAGCCTCCCGGCCCCCGGCGCACAG
CAGCCGGACAGCCCCGGGGGCGGCCCGCAGCCGCCTGGCCAGAAGCGAACTCCCAGAAGA
GGGGAGCAGCAAGGATGGAGTGATAGCCGCGGCACAGAGGTGGCGCTTGATAGAGCAGAG
CGGAGATCCTACAGGGAATATCGACCCTACGAGACCGAGAGGCAGGCGGACTTTACACCT
GAGAAGTTTACAGATGAAAAACCAGTTGACAGATTTGATCGAGACAGACCACTGAGAGGA
CGTGGAGGCCCAAGAGGGGGCATGCGAAGCAGAGGCAGAGGTGGTCTTGGGAACAGAGCT
TTTGACGGTTTTGACCAGAGAGGGAAACGAGAATTTGAGAGATACGGTGGCAGTGATAAA
ATAGCAATCAGAACTGAAGACAACACGGGTGGATATGGAGTTCGCACCTGGGGATCAGGT
AAAGATACCAGTGATGTGGACCCAACTGCTCCGATGGAGGAGGCCACAGCCGTGGACGAG
TCCCTGTGCCCCCTGGAGGAGGAAGCTCCAGCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGCTGCGGGTAGGATGGGTCCTCGCCGCCGGCTTCGCTGAGACTTGCTCGCGTGGGC
TGCCCTCGGCGGGCCCGCAGTGGCCGCGGCGGCATGAAGGGCGCTCTGGGGAGTCCTGTG
GCCGCGGCCGCCGCAGGCGCCGTGATGCAGGAGAGTTTCGGCTGCGTAGTGGCCAACCGC
TTCCACCAGCTGCTGGACGACGAGTCAGACCCGTTCGACATCCTGCGCGAGGCCGAGCGC
CGGCGCCAGCAGCAGCTGCAGCGCAAGAGGCGCGACGAGGCGGCGGCGGCGGTGGCAGCG
GGGACCGGCAACCGCGGTGGCAGGAGCCCGGCTGGGGCTTCGGGCCACAGACCCGGCGCG
GGCGGCGGCCGGAGGGAGTCCCAGAAGGAGCGCAAGAGCCTCCCGGCCCCCGGCGCACAG
CAGCCGGACAGCCCCGGGGGCGGCCCGCAGCCGCCTGGCCAGAAGCGAACTCCCAGAAGA
GGGGAGCAGCAAGGATGGAGTGATAGCCGCGGCACAGAGGTGGCGCTTGATAGAGCAGAG
CGGAGATCCTACAGGGAATATCGACCCTACGAGACCGAGAGGCAGGCGGACTTTACACCT
GAGAAGTTTACAGATGAAAAACCAGTTGACAGATTTGATCGAGACAGACCACTGAGAGGA
CGTGGAGGCCCAAGAGGGGGCATGCGAAGCAGAGGCAGAGGTGGTCTTGGGAACAGAGCT
TTTGACGGTTTTGACCAGAGAGGGAAACGAGAATTTGAGAGATACGGTGGCAGTGATAAA
ATAGCAATCAGAACTGAAGACAACACGGGTGGATATGGAGTTCGCACCTGGGGATCAGGT
AAAGATACCAGTGATGTGGACCCAACTGCTCCGATGGAGGAGGCCACAGCCGTGGACGAG
TCCCTGTGCCCCCTGGAGGAGGAAGCTCCAGCCAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9D450_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D450_MOUSE

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-458, gnl|bosTau2|chr8 (45473130-45472676)
               

               
               1-458, gnl|Hg17|chr9 (96292020-96292466)
               


               
               621-782, gnl|bosTau2|chr8 (45461466-45461305)
               

               
               621-782, gnl|Hg17|chr9 (96307174-96307335)
               

               
               621-782, gnl|Mm7|chr13 (61997137-61997295)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-458, gnl|bosTau2|chr8 (45473130-45472676)
               

               
               1-458, gnl|Hg17|chr9 (96292020-96292466)
               


               
               621-782, gnl|bosTau2|chr8 (45461466-45461305)
               

               
               621-782, gnl|Hg17|chr9 (96307174-96307335)
               

               
               621-782, gnl|Mm7|chr13 (61997137-61997295)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.415628)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)

	1-458, gnl\|bosTau2\|chr8 (45473130-45472676)
	1-458, gnl\|Hg17\|chr9 (96292020-96292466)

	621-782, gnl\|bosTau2\|chr8 (45461466-45461305)
	621-782, gnl\|Hg17\|chr9 (96307174-96307335)
	621-782, gnl\|Mm7\|chr13 (61997137-61997295)