Ss1.1-Lng1-LNG010097B04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGGCTAGAGGTAATCCGCTGGCTGCCGCGGCGGGAATGGCCCGCTTGGGGAACCTCGT CCTGCGACCCTGGATTCGAGAGCTAATTCTGGGGTCAGAGGCACTTTCAAGCCCGCGGGC GGGGCAGCTGCTCAAGGTACTGCAGGAGGCCGAAACCCCGGGCCCGTCCCGCGCCTCCGA CACGTCTCACGTCGACACCGCGCTGCTTGTGTCCGATGGGACCCACAGTATCCGATGTCT GGTGACGCGAGAAGCCCTGAACGCCTCGGACTGGGAGGAGAAGGAGTTCGGTTTTCAAGG GGCAGAAGGTCGGCTGCTGCTGCTGCGGGACTGCGGGGTTCGCGTCCAAGTCGCCGAGGG AGGCGCGCCCGCAGAGTTCTACCTCCAGGTGGACCGCTTCAGCTTGTTGCCCACAGAGCA GCCCCGGGAACAGGTGATTGGTTGCAACCAGGATCCAGATGTGCAGAAAAAGCTTTATGA CTGCTTGCAGGAGCACCTTTCAGAGTCTACCTCTCCCAGTGCAGGCATTTCACTGTCCCA ACTTCTGGATGAGGTAGAGGAGGACCAGGAGCATCGTGGGGCACTAGTGCAACTGGCTGA GAGCTGTCTGATGCTGGCAGGCCCTTGCACGGCAGCCCCCCTCACCCGCTGGGCTGCCTC CCGCTGCAAGGCCACGGGAGAAGCTGTGTACACCATCCCCAGCCTGTGGCTGCGCATCTC TGAGAATGAGCAGCGGATCCTGAGCTGTCTGGGCCCAGGTCAGAGGGCACAGGGCCCTGA GCTACCCCCGCCACACCCAGCTCTGCAGGACCTGTCTCTGGCCCTGATCTCCTCTCCTCC TTCCTCACCCTGTTCCTCAGGAACCCCTGCCTTACTCAGCCACATGTTGTCAGAGGAAAG CGGTGCCAGCATCAGCCTTCTGCCGGCCCTGCCCTTGGATGCTCCAGACCCAGTGCTTAA GGGCAGCTCCCAGCCCCTGTCAGCCGTCTGCTCAGCTCCTGGCCCCTTACCCCCTGACTC TGTACCCAACTCCCCATTCCTGAGCTGCACTCCAAATCTGTCACCCCTTGGCCATGTCCC CAGTCCACACCAGGCCCATGTAACCAAGGCCCAGAAACCTAGCTTGGAGTTCAAGAAGGT AGAGTTACCTCCCAAGGCCTGGCATCGCTCCCCAAGGACAAGAACCACCAAGGAAGCCCT GGAGTCCAGTCCTATGTGGGACCCCCCAAAGAGGCATCGTGATGGTTCCACCTTCCAGTA TGAGTACGAGTCCCCCTGTCCCTCCCTCTGTGCCCAGGTCCAAACTGTCAGGCTCCCTCC CCAGCTCGTAGCCTGGGCCTTGCACTTTTTGATGGAGCCACAACTGGAATCTGAACTAAC CCAGGTGTGAGGGGTCCTGTGAACACGTGGGAGGATGTGTACGCACAGGTCTGTGCTTGG GGGTAGATAAACAGTGCTCCACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGGCTAGAGGTAATCCGCTGGCTGCCGCGGCGGGAATGGCCCGCTTGGGGAACCTCGT CCTGCGACCCTGGATTCGAGAGCTAATTCTGGGGTCAGAGGCACTTTCAAGCCCGCGGGC GGGGCAGCTGCTCAAGGTACTGCAGGAGGCCGAAACCCCGGGCCCGTCCCGCGCCTCCGA CACGTCTCACGTCGACACCGCGCTGCTTGTGTCCGATGGGACCCACAGTATCCGATGTCT GGTGACGCGAGAAGCCCTGAACGCCTCGGACTGGGAGGAGAAGGAGTTCGGTTTTCAAGG GGCAGAAGGTCGGCTGCTGCTGCTGCGGGACTGCGGGGTTCGCGTCCAAGTCGCCGAGGG AGGCGCGCCCGCAGAGTTCTACCTCCAGGTGGACCGCTTCAGCTTGTTGCCCACAGAGCA GCCCCGGGAACAGGTGATTGGTTGCAACCAGGATCCAGATGTGCAGAAAAAGCTTTATGA CTGCTTGCAGGAGCACCTTTCAGAGTCTACCTCTCCCAGTGCAGGCATTTCACTGTCCCA ACTTCTGGATGAGGTAGAGGAGGACCAGGAGCATCGTGGGGCACTAGTGCAACTGGCTGA GAGCTGTCTGATGCTGGCAGGCCCTTGCACGGCAGCCCCCCTCACCCGCTGGGCTGCCTC CCGCTGCAAGGCCACGGGAGAAGCTGTGTACACCATCCCCAGCCTGTGGCTGCGCATCTC TGAGAATGAGCAGCGGATCCTGAGCTGTCTGGGCCCAGGTCAGAGGGCACAGGGCCCTGA GCTACCCCCGCCACACCCAGCTCTGCAGGACCTGTCTCTGGCCCTGATCTCCTCTCCTCC TTCCTCACCCTGTTCCTCAGGAACCCCTGCCTTACTCAGCCACATGTTGTCAGAGGAAAG CGGTGCCAGCATCAGCCTTCTGCCGGCCCTGCCCTTGGATGCTCCAGACCCAGTGCTTAA GGGCAGCTCCCAGCCCCTGTCAGCCGTCTGCTCAGCTCCTGGCCCCTTACCCCCTGACTC TGTACCCAACTCCCCATTCCTGAGCTGCACTCCAAATCTGTCACCCCTTGGCCATGTCCC CAGTCCACACCAGGCCCATGTAACCAAGGCCCAGAAACCTAGCTTGGAGTTCAAGAAGGT AGAGTTACCTCCCAAGGCCTGGCATCGCTCCCCAAGGACAAGAACCACCAAGGAAGCCCT GGAGTCCAGTCCTATGTGGGACCCCCCAAAGAGGCATCGTGATGGTTCCACCTTCCAGTA TGAGTACGAGTCCCCCTGTCCCTCCCTCTGTGCCCAGGTCCAAACTGTCAGGCTCCCTCC CCAGCTCGTAGCCTGGGCCTTGCACTTTTTGATGGAGCCACAACTGGAATCTGAACTAAC CCAGGTGTGAGGGGTCCTGTGAACACGTGGGAGGATGTGTACGCACAGGTCTGTGCTTGG GGGTAGATAAACAGTGCTCCACAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1066-1182, - strand, RNAz p=0.613264 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1066-1182, - strand, RNAz p=0.613264 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 2-138, gnl|bosTau2|chr18 (15150694-15150830) | |
| 2-138, gnl|canFam2|chr5 (84797917-84797568) | |
| 2-138, gnl|hg17|chr16 (66251521-66251880) | |
| 2-138, gnl|Hg17|chr16 (66251659-66251524) | |
| 2-138, gnl|loxAfr1|scaffold_15613 (11385-11730) | |
| 2-138, gnl|mm7|chr8 (104299702-104300032) | |
| 2-138, gnl|Mm7|chr8 (104299839-104299705) | |
| 2-138, gnl|monDom2|scaffold_23 (18781038-18780660) | |
| 2-138, gnl|oryCun1|scaffold_195869 (4037-3694) | |
| 2-138, gnl|panTro1|chr18 (60548109-60548470) | |
| 2-138, gnl|rheMac2|chr20 (65971001-65971348) | |
| 2-138, gnl|rn3|chr19 (35537992-35538333) | |
| 523-677, gnl|bosTau2|chr18 (15154973-15155127) | |
| 523-677, gnl|canFam2|chr5 (84799209-84798746) | |
| 523-677, gnl|dasNov1|scaffold_46212 (10592-10141) | |
| 523-677, gnl|echTel1|scaffold_255075 (3533-3073) | |
| 523-677, gnl|hg17|chr16 (66250281-66250754) | |
| 523-677, gnl|Hg17|chr16 (66250485-66250331) | |
| 523-677, gnl|loxAfr1|scaffold_15613 (10058-10508) | |
| 523-677, gnl|mm7|chr8 (104298316-104298766) | |
| 523-677, gnl|Mm7|chr8 (104298519-104298365) | |
| 523-677, gnl|monDom2|scaffold_23 (18787409-18786917) | |
| 523-677, gnl|oryCun1|scaffold_195869 (5284-4822) | |
| 523-677, gnl|panTro1|chr18 (60546869-60547342) | |
| 523-677, gnl|rheMac2|chr20 (65969760-65970233) | |
| 523-677, gnl|rn3|chr19 (35536612-35537067) | |
| 845-1220, gnl|bosTau2|chr18 (15155631-15156021) | |
| 845-1220, gnl|Hg17|chr16 (66249781-66249389) | |
| 845-1220, gnl|Mm7|chr8 (104297765-104297400) | |
| 1308-1464, gnl|bosTau2|chr18 (15156320-15156464) | |
| 1308-1464, gnl|Mm7|chr8 (104297118-104296985) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-138, gnl|bosTau2|chr18 (15150694-15150830) | |
| 2-138, gnl|canFam2|chr5 (84797917-84797568) | |
| 2-138, gnl|hg17|chr16 (66251521-66251880) | |
| 2-138, gnl|Hg17|chr16 (66251659-66251524) | |
| 2-138, gnl|loxAfr1|scaffold_15613 (11385-11730) | |
| 2-138, gnl|mm7|chr8 (104299702-104300032) | |
| 2-138, gnl|Mm7|chr8 (104299839-104299705) | |
| 2-138, gnl|monDom2|scaffold_23 (18781038-18780660) | |
| 2-138, gnl|oryCun1|scaffold_195869 (4037-3694) | |
| 2-138, gnl|panTro1|chr18 (60548109-60548470) | |
| 2-138, gnl|rheMac2|chr20 (65971001-65971348) | |
| 2-138, gnl|rn3|chr19 (35537992-35538333) | |
| 523-677, gnl|bosTau2|chr18 (15154973-15155127) | |
| 523-677, gnl|canFam2|chr5 (84799209-84798746) | |
| 523-677, gnl|dasNov1|scaffold_46212 (10592-10141) | |
| 523-677, gnl|echTel1|scaffold_255075 (3533-3073) | |
| 523-677, gnl|hg17|chr16 (66250281-66250754) | |
| 523-677, gnl|Hg17|chr16 (66250485-66250331) | |
| 523-677, gnl|loxAfr1|scaffold_15613 (10058-10508) | |
| 523-677, gnl|mm7|chr8 (104298316-104298766) | |
| 523-677, gnl|Mm7|chr8 (104298519-104298365) | |
| 523-677, gnl|monDom2|scaffold_23 (18787409-18786917) | |
| 523-677, gnl|oryCun1|scaffold_195869 (5284-4822) | |
| 523-677, gnl|panTro1|chr18 (60546869-60547342) | |
| 523-677, gnl|rheMac2|chr20 (65969760-65970233) | |
| 523-677, gnl|rn3|chr19 (35536612-35537067) | |
| 845-1220, gnl|bosTau2|chr18 (15155631-15156021) | |
| 845-1220, gnl|Hg17|chr16 (66249781-66249389) | |
| 845-1220, gnl|Mm7|chr8 (104297765-104297400) | |
| 1308-1464, gnl|bosTau2|chr18 (15156320-15156464) | |
| 1308-1464, gnl|Mm7|chr8 (104297118-104296985) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nco (0.161734) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) |