Ss1.1-Lng1-LNG010097E09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGCGGGCCACAAATCTGGCAAAAGAGAGCTAGTGGTAAAGGGAGCTGGTGAAGGGGT GGTGTAAGGGGTAGAGGGCCGGGCACGGCCGGTTGACAGAGCGACTCTGATCGCTCTCCG CACTTCCGCTCTGCTGGGTCCCACAACTCCTCGCTACGCGAGGCTAGGGCGTTTGTTAGA CAGAGTCAGTTGTGGGGTTCAGAGGGTCAGCAGTCAGTCCAGAGATTCAGTACTTGTCAC TTTCGGTACTCAGGGAGTTGGTAGGTTCAGTGTTTGGGATGCCAAAGAAATCCGTCTTTT GATTCAGAGTTCATCATCTAAAGGTTTAGGTAGCAATCGACATCATGCTGAAAGCTGTGA TCCTGATTGGAGGCCCCCAAAAGGGGACTCGCTTCAGGCCCCTGTCTTTTGAGGTGCCCA AACCCCTGTTTCCTGTGGCGGGGGTCCCTATGATTCAGCACCACATTGAGGCTTGTGCCC AGGTCCCTGGGATGCAGGAGATCCTGCTCATTGGCTTCTACCAACCTGATGAGCCCCTTA CCCGGTTCCTAGAAGCCGCGCAGCAGGAGTTTAACCTTCCAATCAGGTACCTGCAGGAAT TTGCCCCCCTGGGCACAGGTGGTGGTCTCTACCATTTCCGGGACCAGATCCTGGCTGGAG GCCCCGAGGCCTTCTTTGTGCTCAACGCTGATGTCTGCTCCGACTTCCCCTTGAGCGCCA TGCTGGATGCCCACAGACACCGGCCTCACCCCTTCTTGCTCCTTGGCACCACGGCTAACA GGACACAATCCCTCAACTATGGCTGCATCGTAGAGAATCCACAAACGCATGAGGTCCTGC ACTATGTGGAGAAACCCAGCACGTTTGTCAGTGACATCATCAACTGTGGCATCTACCTCT TTTCCCCAGAAGCCCTGAAGCCCCTCGGGGAAGTCTTCCAGCGTAATCAGCAGGATGGGC AACTGGAGGACTCTTCAGTCTTGTGGCCAGGGGCAGGGACCATCCGCCTGGAGCAGGATG TGTTCGCAGCCCTGGCTGGGCAGGGCCAGATCTACGTGCACCTCACCGATGGTATCTGGA GCCAGATCAAGTCTGCAGGCTCAGCCCTCTACGCCTCTCGCCTCTATCTGAGCCAGTACC AGCTCACTCACCCAGAACGCCTGGCCAAGCACACCCCGGGGGGTCCACGGATTCGAGGAA ATGTTTACATCCACCCGACGGCTAAGGTGGCCCCATCGGCTGTGCTGGGCCCCAACGTCT CCATCGGAGAGGGGGTGACTGTGGGCGAGGGTGTGCGGCTCCGAGAGAGCATTGTCCTCC ATGGGGCCACGCTGCAGGAGCACACGTGTGTCCTACACAGCATCGTAGGCTGGGGCAGCA CGGTGGGGCGCTGGGCCCGCGTGGAAGGTACCCCCAATGACCCCAATCCCAACGACCCCC GAGCCCACATGGACAGTGAGAGCCTCTTCAAGGATGGGAAGCTTCTGCCCGCTATCACCA TCCTAGGCTGCCGTGTCCGGATCCCTGCTGAGGTGCTCATCCTGAACTCGATTGTTCTGC CACACAAGGAGCTGAGCCGCAGCTTCACCAACCAGATCATCCTCTGAAGGGGCTGCCAGG AGCCCCCCCCCCACCTTCCTCTCCTGTCTGCACCCCTGAGGCTTCTGCCTGCAAGGCCAG CCTCTGTCCAGGAGGGACTGGAGGAAGCCAGGCAGGCTCTTCACATCGTGGGGAGCAACA CGGGTGACCGGGGCCTCCCTCGCCACTCCCTAATAAACCTGGGTGAACCTTGGAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGCGGGCCACAAATCTGGCAAAAGAGAGCTAGTGGTAAAGGGAGCTGGTGAAGGGGT GGTGTAAGGGGTAGAGGGCCGGGCACGGCCGGTTGACAGAGCGACTCTGATCGCTCTCCG CACTTCCGCTCTGCTGGGTCCCACAACTCCTCGCTACGCGAGGCTAGGGCGTTTGTTAGA CAGAGTCAGTTGTGGGGTTCAGAGGGTCAGCAGTCAGTCCAGAGATTCAGTACTTGTCAC TTTCGGTACTCAGGGAGTTGGTAGGTTCAGTGTTTGGGATGCCAAAGAAATCCGTCTTTT GATTCAGAGTTCATCATCTAAAGGTTTAGGTAGCAATCGACATCATGCTGAAAGCTGTGA TCCTGATTGGAGGCCCCCAAAAGGGGACTCGCTTCAGGCCCCTGTCTTTTGAGGTGCCCA AACCCCTGTTTCCTGTGGCGGGGGTCCCTATGATTCAGCACCACATTGAGGCTTGTGCCC AGGTCCCTGGGATGCAGGAGATCCTGCTCATTGGCTTCTACCAACCTGATGAGCCCCTTA CCCGGTTCCTAGAAGCCGCGCAGCAGGAGTTTAACCTTCCAATCAGGTACCTGCAGGAAT TTGCCCCCCTGGGCACAGGTGGTGGTCTCTACCATTTCCGGGACCAGATCCTGGCTGGAG GCCCCGAGGCCTTCTTTGTGCTCAACGCTGATGTCTGCTCCGACTTCCCCTTGAGCGCCA TGCTGGATGCCCACAGACACCGGCCTCACCCCTTCTTGCTCCTTGGCACCACGGCTAACA GGACACAATCCCTCAACTATGGCTGCATCGTAGAGAATCCACAAACGCATGAGGTCCTGC ACTATGTGGAGAAACCCAGCACGTTTGTCAGTGACATCATCAACTGTGGCATCTACCTCT TTTCCCCAGAAGCCCTGAAGCCCCTCGGGGAAGTCTTCCAGCGTAATCAGCAGGATGGGC AACTGGAGGACTCTTCAGTCTTGTGGCCAGGGGCAGGGACCATCCGCCTGGAGCAGGATG TGTTCGCAGCCCTGGCTGGGCAGGGCCAGATCTACGTGCACCTCACCGATGGTATCTGGA GCCAGATCAAGTCTGCAGGCTCAGCCCTCTACGCCTCTCGCCTCTATCTGAGCCAGTACC AGCTCACTCACCCAGAACGCCTGGCCAAGCACACCCCGGGGGGTCCACGGATTCGAGGAA ATGTTTACATCCACCCGACGGCTAAGGTGGCCCCATCGGCTGTGCTGGGCCCCAACGTCT CCATCGGAGAGGGGGTGACTGTGGGCGAGGGTGTGCGGCTCCGAGAGAGCATTGTCCTCC ATGGGGCCACGCTGCAGGAGCACACGTGTGTCCTACACAGCATCGTAGGCTGGGGCAGCA CGGTGGGGCGCTGGGCCCGCGTGGAAGGTACCCCCAATGACCCCAATCCCAACGACCCCC GAGCCCACATGGACAGTGAGAGCCTCTTCAAGGATGGGAAGCTTCTGCCCGCTATCACCA TCCTAGGCTGCCGTGTCCGGATCCCTGCTGAGGTGCTCATCCTGAACTCGATTGTTCTGC CACACAAGGAGCTGAGCCGCAGCTTCACCAACCAGATCATCCTCTGAAGGGGCTGCCAGG AGCCCCCCCCCCACCTTCCTCTCCTGTCTGCACCCCTGAGGCTTCTGCCTGCAAGGCCAG CCTCTGTCCAGGAGGGACTGGAGGAAGCCAGGCAGGCTCTTCACATCGTGGGGAGCAACA CGGGTGACCGGGGCCTCCCTCGCCACTCCCTAATAAACCTGGGTGAACCTTGGAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-326, gnl|bosTau2|chr2 (64367120-64366783) | |
| 1-326, gnl|Hg17|chr2 (220189128-220189484) | |
| 1-326, gnl|Mm7|chr1 (75662168-75662512) | |
| 384-484, gnl|bosTau2|chr2 (64366041-64365941) | |
| 384-484, gnl|canFam2|chr37 (29011428-29011504) | |
| 384-484, gnl|danRer3|chrNA (201704219-201704155) | |
| 384-484, gnl|dasNov1|scaffold_176514 (1206-1132) | |
| 384-484, gnl|fr1|chrUn (50924100-50924036) | |
| 384-484, gnl|hg17|chr2 (220190334-220190410) | |
| 384-484, gnl|Hg17|chr2 (220190347-220190447) | |
| 384-484, gnl|mm7|chr1 (75663121-75663193) | |
| 384-484, gnl|Mm7|chr1 (75663130-75663230) | |
| 384-484, gnl|monDom2|scaffold_39 (1051759-1051683) | |
| 384-484, gnl|oryCun1|scaffold_209686 (3434-3510) | |
| 384-484, gnl|panTro1|chr13 (110355049-110355125) | |
| 384-484, gnl|rheMac2|chr12 (83348889-83348965) | |
| 384-484, gnl|rn3|chr9 (74861485-74861559) | |
| 384-484, gnl|tetNig1|chr2 (14577615-14577551) | |
| 384-484, gnl|xenTro1|scaffold_31 (2701170-2701099) | |
| 584-774, gnl|bosTau2|chr2 (64364661-64364471) | |
| 584-774, gnl|canFam2|chr37 (29012835-29012950) | |
| 584-774, gnl|danRer3|chrNA (201702565-201702450) | |
| 584-774, gnl|echTel1|scaffold_309806 (82760-82875) | |
| 584-774, gnl|hg17|chr2 (220192076-220192191) | |
| 584-774, gnl|Hg17|chr2 (220192075-220192265) | |
| 584-774, gnl|loxAfr1|scaffold_127091 (1166-1281) | |
| 584-774, gnl|mm7|chr1 (75665034-75665149) | |
| 584-774, gnl|Mm7|chr1 (75665033-75665223) | |
| 584-774, gnl|monDom2|scaffold_39 (1050861-1050746) | |
| 584-774, gnl|panTro1|chr13 (110356791-110356906) | |
| 584-774, gnl|rheMac2|chr12 (83350622-83350737) | |
| 584-774, gnl|rn3|chr9 (74863420-74863535) | |
| 584-774, gnl|tetNig1|chr2 (14577039-14576924) | |
| 584-774, gnl|xenTro1|scaffold_31 (2700099-2699984) | |
| 832-969, gnl|bosTau2|chr2 (64362990-64362852) | |
| 832-969, gnl|Hg17|chr2 (220194308-220194446) | |
| 832-969, gnl|Mm7|chr1 (75666604-75666742) | |
| 1335-1507, gnl|bosTau2|chr2 (64360976-64360804) | |
| 1335-1507, gnl|Hg17|chr2 (220196478-220196650) | |
| 1335-1507, gnl|Mm7|chr1 (75668635-75668807) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-326, gnl|bosTau2|chr2 (64367120-64366783) | |
| 1-326, gnl|Hg17|chr2 (220189128-220189484) | |
| 1-326, gnl|Mm7|chr1 (75662168-75662512) | |
| 384-484, gnl|bosTau2|chr2 (64366041-64365941) | |
| 384-484, gnl|canFam2|chr37 (29011428-29011504) | |
| 384-484, gnl|danRer3|chrNA (201704219-201704155) | |
| 384-484, gnl|dasNov1|scaffold_176514 (1206-1132) | |
| 384-484, gnl|fr1|chrUn (50924100-50924036) | |
| 384-484, gnl|hg17|chr2 (220190334-220190410) | |
| 384-484, gnl|Hg17|chr2 (220190347-220190447) | |
| 384-484, gnl|mm7|chr1 (75663121-75663193) | |
| 384-484, gnl|Mm7|chr1 (75663130-75663230) | |
| 384-484, gnl|monDom2|scaffold_39 (1051759-1051683) | |
| 384-484, gnl|oryCun1|scaffold_209686 (3434-3510) | |
| 384-484, gnl|panTro1|chr13 (110355049-110355125) | |
| 384-484, gnl|rheMac2|chr12 (83348889-83348965) | |
| 384-484, gnl|rn3|chr9 (74861485-74861559) | |
| 384-484, gnl|tetNig1|chr2 (14577615-14577551) | |
| 384-484, gnl|xenTro1|scaffold_31 (2701170-2701099) | |
| 584-774, gnl|bosTau2|chr2 (64364661-64364471) | |
| 584-774, gnl|canFam2|chr37 (29012835-29012950) | |
| 584-774, gnl|danRer3|chrNA (201702565-201702450) | |
| 584-774, gnl|echTel1|scaffold_309806 (82760-82875) | |
| 584-774, gnl|hg17|chr2 (220192076-220192191) | |
| 584-774, gnl|Hg17|chr2 (220192075-220192265) | |
| 584-774, gnl|loxAfr1|scaffold_127091 (1166-1281) | |
| 584-774, gnl|mm7|chr1 (75665034-75665149) | |
| 584-774, gnl|Mm7|chr1 (75665033-75665223) | |
| 584-774, gnl|monDom2|scaffold_39 (1050861-1050746) | |
| 584-774, gnl|panTro1|chr13 (110356791-110356906) | |
| 584-774, gnl|rheMac2|chr12 (83350622-83350737) | |
| 584-774, gnl|rn3|chr9 (74863420-74863535) | |
| 584-774, gnl|tetNig1|chr2 (14577039-14576924) | |
| 584-774, gnl|xenTro1|scaffold_31 (2700099-2699984) | |
| 832-969, gnl|bosTau2|chr2 (64362990-64362852) | |
| 832-969, gnl|Hg17|chr2 (220194308-220194446) | |
| 832-969, gnl|Mm7|chr1 (75666604-75666742) | |
| 1335-1507, gnl|bosTau2|chr2 (64360976-64360804) | |
| 1335-1507, gnl|Hg17|chr2 (220196478-220196650) | |
| 1335-1507, gnl|Mm7|chr1 (75668635-75668807) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| nmm (0.398406) | |
| pty (0.285429) | |
| ute (0.265569) | |
| eep (0.245128) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| eye (0.170503) | |
| csp (0.161186) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.398406) | |
| pty (0.285429) | |
| ute (0.265569) | |
| eep (0.245128) | |
| cty (0.20816) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| eye (0.170503) | |
| csp (0.161186) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) | |
| jej (0.0989218) |