Ss1.1-Lng1-LNG010098C06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCCTAGAAGAGAGATTAGCTACAGATTCTCCATCCTCAGTCTTTGCAAAGGGACGGCT GTGCCAGCCAGGCTCATGCAGGCTCCTGGCAGCATGGCCATGAAGTTCGGGGCCCTCCTG CTGGTCCTTGTGCTCAGCCTGGCACAGCCAGCCTCGGGCCGCCGGAAGCTCCTGGTGTTT CTGCTGGATGGTTTTCGCTCGGACTACATCAGTGATGAGGCCCTGGAGTCCTTGCCTGGC TTCAAAGAGATTGTGAGCAGGGGAGTAAAAGTGGATTACTTGACCCCCGACTTTCCTAGT CTCTCTTATCCGAATTACTACACCCTGATGACCGGCCGCCATTGTGAGGTCCATCAGATG ATCGGGAACTACATGTGGGACCCGGCCACCAACAAGTCATTTGACATAGGTGTCAACAGA GACAGCCTGATGCCTCTCTGGTGGAATGGATCAGAACCTCTGTGGATCACTCTGACCAAG GCCAAGAGGAAGGTTTACATGTACTACTGGCCAGGCTGTGAGGTTGAGATTCTTGGTGTC AGACCCACTTACTGCCTAGAATATAAAAATGTCCCAACGGATATCAATTTTGCCAATGCT GTCAGCGATGCTCTTGACTTCTTCAAGAGCGGCCAGGCCGACCTGGCAGCCATATACCAC GAGCGCATTGATGTGGAAGGCCACCACTTTGGGCCCTCGTCACCACAGAGGAGAGACGCC CTGAAGGCTGTGGACACTGTCTTGAAGTACATGACCGAGTGGATCCAGGAGCGAGAGCTG CAGGACGACCTCAATGTCATCATCTTCTCCGACCACGGCATGACAGACATCTTCTGGATG GACAAAGTGATTGAGCTGAATAAGTACATCAGCCTGAATGACCTGCAGCAGGTGAAGGAC CGAGGGCCTGTTGTCAGCTTGTGGCCAGCCCCCGGGAAGCATTCCGAGATATATAACAAA TTGAGAAGAGTTGAACACATGACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCCTAGAAGAGAGATTAGCTACAGATTCTCCATCCTCAGTCTTTGCAAAGGGACGGCT GTGCCAGCCAGGCTCATGCAGGCTCCTGGCAGCATGGCCATGAAGTTCGGGGCCCTCCTG CTGGTCCTTGTGCTCAGCCTGGCACAGCCAGCCTCGGGCCGCCGGAAGCTCCTGGTGTTT CTGCTGGATGGTTTTCGCTCGGACTACATCAGTGATGAGGCCCTGGAGTCCTTGCCTGGC TTCAAAGAGATTGTGAGCAGGGGAGTAAAAGTGGATTACTTGACCCCCGACTTTCCTAGT CTCTCTTATCCGAATTACTACACCCTGATGACCGGCCGCCATTGTGAGGTCCATCAGATG ATCGGGAACTACATGTGGGACCCGGCCACCAACAAGTCATTTGACATAGGTGTCAACAGA GACAGCCTGATGCCTCTCTGGTGGAATGGATCAGAACCTCTGTGGATCACTCTGACCAAG GCCAAGAGGAAGGTTTACATGTACTACTGGCCAGGCTGTGAGGTTGAGATTCTTGGTGTC AGACCCACTTACTGCCTAGAATATAAAAATGTCCCAACGGATATCAATTTTGCCAATGCT GTCAGCGATGCTCTTGACTTCTTCAAGAGCGGCCAGGCCGACCTGGCAGCCATATACCAC GAGCGCATTGATGTGGAAGGCCACCACTTTGGGCCCTCGTCACCACAGAGGAGAGACGCC CTGAAGGCTGTGGACACTGTCTTGAAGTACATGACCGAGTGGATCCAGGAGCGAGAGCTG CAGGACGACCTCAATGTCATCATCTTCTCCGACCACGGCATGACAGACATCTTCTGGATG GACAAAGTGATTGAGCTGAATAAGTACATCAGCCTGAATGACCTGCAGCAGGTGAAGGAC CGAGGGCCTGTTGTCAGCTTGTGGCCAGCCCCCGGGAAGCATTCCGAGATATATAACAAA TTGAGAAGAGTTGAACACATGACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 69-335, gnl|bosTau2|chr27 (7595998-7595732) | |
| 69-335, gnl|canFam2|chr16 (49208085-49207856) | |
| 69-335, gnl|danRer3|chrNA (105087688-105087893) | |
| 69-335, gnl|dasNov1|scaffold_97674 (9553-9325) | |
| 69-335, gnl|echTel1|scaffold_307906 (2944-2715) | |
| 69-335, gnl|fr1|chrUn (108568884-108568679) | |
| 69-335, gnl|galGal2|chr4 (40190891-40190686) | |
| 69-335, gnl|hg17|chr4 (185513858-185514087) | |
| 69-335, gnl|Hg17|chr4 (185514150-185513880) | |
| 69-335, gnl|mm7|chr8 (45765109-45764876) | |
| 69-335, gnl|Mm7|chr8 (45764801-45765081) | |
| 69-335, gnl|monDom2|scaffold_9 (66293078-66293310) | |
| 69-335, gnl|oryCun1|scaffold_147694 (7976-8202) | |
| 69-335, gnl|panTro1|chr3 (203723042-203723271) | |
| 69-335, gnl|rheMac2|chr5 (176327133-176327362) | |
| 69-335, gnl|rn3|chr16 (48516441-48516673) | |
| 69-335, gnl|tetNig1|chrUn_random (120896013-120895812) | |
| 69-335, gnl|xenTro1|scaffold_99 (1752206-1752435) | |
| 513-627, gnl|bosTau2|chr27 (7544169-7544055) | |
| 513-627, gnl|canFam2|chr16 (49286898-49286751) | |
| 513-627, gnl|danRer3|chrNA (105069512-105069635) | |
| 513-627, gnl|dasNov1|scaffold_236805 (575-711) | |
| 513-627, gnl|galGal2|chr4 (40205650-40205508) | |
| 513-627, gnl|hg17|chr4 (185420441-185420587) | |
| 513-627, gnl|Hg17|chr4 (185420576-185420462) | |
| 513-627, gnl|loxAfr1|scaffold_959 (13802-13655) | |
| 513-627, gnl|mm7|chr8 (45831589-45831440) | |
| 513-627, gnl|Mm7|chr8 (45831451-45831565) | |
| 513-627, gnl|monDom2|scaffold_9 (66206924-66207071) | |
| 513-627, gnl|oryCun1|scaffold_212549 (146768-146916) | |
| 513-627, gnl|panTro1|chr3 (203629771-203629917) | |
| 513-627, gnl|rheMac2|chr5 (176244357-176244496) | |
| 513-627, gnl|rn3|chr16 (48440685-48440833) | |
| 513-627, gnl|xenTro1|scaffold_99 (1745457-1745598) | |
| 767-951, gnl|bosTau2|chr27 (7537303-7537119) | |
| 767-951, gnl|canFam2|chr16 (49296640-49296424) | |
| 767-951, gnl|danRer3|chrNA (105066728-105066901) | |
| 767-951, gnl|dasNov1|scaffold_135148 (1380-1164) | |
| 767-951, gnl|echTel1|scaffold_284814 (42300-42516) | |
| 767-951, gnl|galGal2|chr4 (40209798-40209579) | |
| 767-951, gnl|hg17|chr4 (185413151-185413369) | |
| 767-951, gnl|Hg17|chr4 (185413339-185413155) | |
| 767-951, gnl|loxAfr1|scaffold_959 (26353-26135) | |
| 767-951, gnl|mm7|chr8 (45843931-45843720) | |
| 767-951, gnl|Mm7|chr8 (45843741-45843925) | |
| 767-951, gnl|monDom2|scaffold_9 (66184529-66184741) | |
| 767-951, gnl|oryCun1|scaffold_212549 (136478-136694) | |
| 767-951, gnl|panTro1|chr3 (203622495-203622711) | |
| 767-951, gnl|rheMac2|chr5 (176234766-176234984) | |
| 767-951, gnl|rn3|chr16 (48419849-48420061) | |
| 767-951, gnl|xenTro1|scaffold_99 (1742332-1742540) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 69-335, gnl|bosTau2|chr27 (7595998-7595732) | |
| 69-335, gnl|canFam2|chr16 (49208085-49207856) | |
| 69-335, gnl|danRer3|chrNA (105087688-105087893) | |
| 69-335, gnl|dasNov1|scaffold_97674 (9553-9325) | |
| 69-335, gnl|echTel1|scaffold_307906 (2944-2715) | |
| 69-335, gnl|fr1|chrUn (108568884-108568679) | |
| 69-335, gnl|galGal2|chr4 (40190891-40190686) | |
| 69-335, gnl|hg17|chr4 (185513858-185514087) | |
| 69-335, gnl|Hg17|chr4 (185514150-185513880) | |
| 69-335, gnl|mm7|chr8 (45765109-45764876) | |
| 69-335, gnl|Mm7|chr8 (45764801-45765081) | |
| 69-335, gnl|monDom2|scaffold_9 (66293078-66293310) | |
| 69-335, gnl|oryCun1|scaffold_147694 (7976-8202) | |
| 69-335, gnl|panTro1|chr3 (203723042-203723271) | |
| 69-335, gnl|rheMac2|chr5 (176327133-176327362) | |
| 69-335, gnl|rn3|chr16 (48516441-48516673) | |
| 69-335, gnl|tetNig1|chrUn_random (120896013-120895812) | |
| 69-335, gnl|xenTro1|scaffold_99 (1752206-1752435) | |
| 513-627, gnl|bosTau2|chr27 (7544169-7544055) | |
| 513-627, gnl|canFam2|chr16 (49286898-49286751) | |
| 513-627, gnl|danRer3|chrNA (105069512-105069635) | |
| 513-627, gnl|dasNov1|scaffold_236805 (575-711) | |
| 513-627, gnl|galGal2|chr4 (40205650-40205508) | |
| 513-627, gnl|hg17|chr4 (185420441-185420587) | |
| 513-627, gnl|Hg17|chr4 (185420576-185420462) | |
| 513-627, gnl|loxAfr1|scaffold_959 (13802-13655) | |
| 513-627, gnl|mm7|chr8 (45831589-45831440) | |
| 513-627, gnl|Mm7|chr8 (45831451-45831565) | |
| 513-627, gnl|monDom2|scaffold_9 (66206924-66207071) | |
| 513-627, gnl|oryCun1|scaffold_212549 (146768-146916) | |
| 513-627, gnl|panTro1|chr3 (203629771-203629917) | |
| 513-627, gnl|rheMac2|chr5 (176244357-176244496) | |
| 513-627, gnl|rn3|chr16 (48440685-48440833) | |
| 513-627, gnl|xenTro1|scaffold_99 (1745457-1745598) | |
| 767-951, gnl|bosTau2|chr27 (7537303-7537119) | |
| 767-951, gnl|canFam2|chr16 (49296640-49296424) | |
| 767-951, gnl|danRer3|chrNA (105066728-105066901) | |
| 767-951, gnl|dasNov1|scaffold_135148 (1380-1164) | |
| 767-951, gnl|echTel1|scaffold_284814 (42300-42516) | |
| 767-951, gnl|galGal2|chr4 (40209798-40209579) | |
| 767-951, gnl|hg17|chr4 (185413151-185413369) | |
| 767-951, gnl|Hg17|chr4 (185413339-185413155) | |
| 767-951, gnl|loxAfr1|scaffold_959 (26353-26135) | |
| 767-951, gnl|mm7|chr8 (45843931-45843720) | |
| 767-951, gnl|Mm7|chr8 (45843741-45843925) | |
| 767-951, gnl|monDom2|scaffold_9 (66184529-66184741) | |
| 767-951, gnl|oryCun1|scaffold_212549 (136478-136694) | |
| 767-951, gnl|panTro1|chr3 (203622495-203622711) | |
| 767-951, gnl|rheMac2|chr5 (176234766-176234984) | |
| 767-951, gnl|rn3|chr16 (48419849-48420061) | |
| 767-951, gnl|xenTro1|scaffold_99 (1742332-1742540) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| clu (0.478583) | |
| fbs (0.350693) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pgl (0.118483) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| fbs (0.350693) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| cag (0.151194) | |
| liv (0.146284) | |
| hyp (0.142837) | |
| pgl (0.118483) |