Ss1.1-Lng1-LNG010098F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAAAGGCCACAGAGCTAGGGGCTGGCAGGGTTGAGTCTTGAACATATAAGGTCAGAGT CTGGACTTTCTGACACACCCAGATGCTCCGGACAACACCTTGAGGAACACATAGCAAAGG TCTTGATTCTCACTGGGCCCCCGGAAAAACAAACATGAGAACAGCAGCTTCAACTCACTC CAAGGGCGCTCGCGTCCTCACGGCAAGGACCCCACGGAGGGCTGCCCGCTGCAGGCCTAG AAGGACCCCGCTTAGTCGGCAAGGCCAGCTATCGCAGTGCCTGGTGGCCGCGCGGGGAGG TCCAGGTGACTCGGACCCGAACTCCAGCTGGACTGGAACTCTGAATAGACCAGAATCTGG GGTGGCTTAGGCCTCGGCCGGTTCGCGTGGCTGCAGGCCTAGAGAAACGGAGGAGCAGAG AGGGAAGGAGGCGCTGCCAAAAGCTGAGGCTGGGAGGTCCAGGAGGGAGATGACTTCGAT CTTGCGGAGCCCTCAGGCACTCCAGCTCACTCTGGCACTGATCAAGCCTGATGCAGTTGC TCACCCACTGATTCTAGAGGCTATTCATCAGCAGATTCTGAGCAACAAGTTCCTTATTGT ACGAATGAGAGAACTTCTGTGGAGAAAAGAAGATTGCCAGAAGTTTTATCAAGAGCATGA AGGACGTTTTTTCTATCAGCGGCTGGTAGAATTCATGGCCAGCGGGCCAATCCGAGCCTA CATCCTTGCCCACAAAGATGCCATCCAGCTCTGGAGGACAGTGATGGGACCCACCAGAGT GTTTCGAGCACGCCACATAGCCCCAGATTCAATTCGTGGGAGTTTTGGCCTCACTGACAC CCGTAATACAACCCATGGCTCTGATTCTGTGGTTTCAGCCAGTAGAGAGATTGCAGCCTT CTTCCCTGACTTCAGTGAACAGCAATGGTATGAGGAAGAGGAGCCCCAGTTGCGATGTGG GCCTGTGCACTACAGTCCAGAGGGAGGCATCCACTGTGCAGCTGGAACAGGAGGCCCAGG GCCAGCCTGACGCAGGCCTCTTGGTCTGTGAAGACTGATGGCATTGCCCATCCTTTCCTA GACCTCTGGTCCACAGCATTCTCTTAGGACCAGGGAGGCCTGGGGCTCATCACACCATCT CTGCAGGGCACTGCCACCTGCCGGATAGCTACCTCCTCACTGCCAACTCTTCTAGAATCT AACTGTCTACCTCTTCTCTGGAATATTGATGGGTGGTTCAGAGGAATGATGGCTCCTTTT TTTTTCTAAGAACTCTTCATCCTTTTTCAAGCAGAAGCTTGCCTAGCTGACTTGCCAAAA AGATGCAGTGACTCTGTATTAGTAACATTTGTCCTGTTTTCCTTAATAAAAGTCAGTGTT CTACTGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAAAGGCCACAGAGCTAGGGGCTGGCAGGGTTGAGTCTTGAACATATAAGGTCAGAGT CTGGACTTTCTGACACACCCAGATGCTCCGGACAACACCTTGAGGAACACATAGCAAAGG TCTTGATTCTCACTGGGCCCCCGGAAAAACAAACATGAGAACAGCAGCTTCAACTCACTC CAAGGGCGCTCGCGTCCTCACGGCAAGGACCCCACGGAGGGCTGCCCGCTGCAGGCCTAG AAGGACCCCGCTTAGTCGGCAAGGCCAGCTATCGCAGTGCCTGGTGGCCGCGCGGGGAGG TCCAGGTGACTCGGACCCGAACTCCAGCTGGACTGGAACTCTGAATAGACCAGAATCTGG GGTGGCTTAGGCCTCGGCCGGTTCGCGTGGCTGCAGGCCTAGAGAAACGGAGGAGCAGAG AGGGAAGGAGGCGCTGCCAAAAGCTGAGGCTGGGAGGTCCAGGAGGGAGATGACTTCGAT CTTGCGGAGCCCTCAGGCACTCCAGCTCACTCTGGCACTGATCAAGCCTGATGCAGTTGC TCACCCACTGATTCTAGAGGCTATTCATCAGCAGATTCTGAGCAACAAGTTCCTTATTGT ACGAATGAGAGAACTTCTGTGGAGAAAAGAAGATTGCCAGAAGTTTTATCAAGAGCATGA AGGACGTTTTTTCTATCAGCGGCTGGTAGAATTCATGGCCAGCGGGCCAATCCGAGCCTA CATCCTTGCCCACAAAGATGCCATCCAGCTCTGGAGGACAGTGATGGGACCCACCAGAGT GTTTCGAGCACGCCACATAGCCCCAGATTCAATTCGTGGGAGTTTTGGCCTCACTGACAC CCGTAATACAACCCATGGCTCTGATTCTGTGGTTTCAGCCAGTAGAGAGATTGCAGCCTT CTTCCCTGACTTCAGTGAACAGCAATGGTATGAGGAAGAGGAGCCCCAGTTGCGATGTGG GCCTGTGCACTACAGTCCAGAGGGAGGCATCCACTGTGCAGCTGGAACAGGAGGCCCAGG GCCAGCCTGACGCAGGCCTCTTGGTCTGTGAAGACTGATGGCATTGCCCATCCTTTCCTA GACCTCTGGTCCACAGCATTCTCTTAGGACCAGGGAGGCCTGGGGCTCATCACACCATCT CTGCAGGGCACTGCCACCTGCCGGATAGCTACCTCCTCACTGCCAACTCTTCTAGAATCT AACTGTCTACCTCTTCTCTGGAATATTGATGGGTGGTTCAGAGGAATGATGGCTCCTTTT TTTTTCTAAGAACTCTTCATCCTTTTTCAAGCAGAAGCTTGCCTAGCTGACTTGCCAAAA AGATGCAGTGACTCTGTATTAGTAACATTTGTCCTGTTTTCCTTAATAAAAGTCAGTGTT CTACTGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 299-456, + strand, RNAz p=0.841229 | |
| 745-861, - strand, RNAz p=0.944049 | |
| 942-1174, - strand, RNAz p=0.99335 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 299-456, + strand, RNAz p=0.841229 | |
| 745-861, - strand, RNAz p=0.944049 | |
| 942-1174, - strand, RNAz p=0.99335 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005793, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 187-456, gnl|bosTau2|chr22 (39440932-39440649) | |
| 187-456, gnl|Hg17|chr3 (48317966-48317700) | |
| 187-456, gnl|Mm7|chr9 (109529324-109529583) | |
| 558-663, gnl|bosTau2|chr22 (39436871-39436766) | |
| 558-663, gnl|canFam2|chr20 (43772897-43772768) | |
| 558-663, gnl|echTel1|scaffold_155799 (3591-3719) | |
| 558-663, gnl|fr1|chrUn (63012717-63012603) | |
| 558-663, gnl|galGal2|chrUn (6062605-6062495) | |
| 558-663, gnl|hg17|chr3 (48313216-48313344) | |
| 558-663, gnl|Hg17|chr3 (48313325-48313220) | |
| 558-663, gnl|loxAfr1|scaffold_49350 (14168-14040) | |
| 558-663, gnl|mm7|chr9 (109536346-109536217) | |
| 558-663, gnl|Mm7|chr9 (109536235-109536340) | |
| 558-663, gnl|monDom2|scaffold_253 (256960-256832) | |
| 558-663, gnl|oryCun1|scaffold_93144 (157-29) | |
| 558-663, gnl|panTro1|chr2 (49792280-49792408) | |
| 558-663, gnl|rn3|chr8 (114229244-114229115) | |
| 558-663, gnl|tetNig1|chr14 (5516655-5516774) | |
| 558-663, gnl|xenTro1|scaffold_1053 (288221-288093) | |
| 700-861, gnl|bosTau2|chr22 (39435158-39434997) | |
| 700-861, gnl|canFam2|chr20 (43774881-43774684) | |
| 700-861, gnl|danRer3|chr20 (19888847-19888667) | |
| 700-861, gnl|echTel1|scaffold_155799 (2426-2618) | |
| 700-861, gnl|fr1|chrUn (63013125-63012932) | |
| 700-861, gnl|galGal2|chrUn (6064002-6063816) | |
| 700-861, gnl|hg17|chr3 (48311557-48311748) | |
| 700-861, gnl|Hg17|chr3 (48311732-48311571) | |
| 700-861, gnl|mm7|chr9 (109538736-109538543) | |
| 700-861, gnl|Mm7|chr9 (109538553-109538714) | |
| 700-861, gnl|monDom2|scaffold_253 (257509-257322) | |
| 700-861, gnl|oryCun1|scaffold_93144 (1524-1327) | |
| 700-861, gnl|panTro1|chr2 (49790622-49790813) | |
| 700-861, gnl|rheMac2|chr2 (88202726-88202535) | |
| 700-861, gnl|rn3|chr8 (114231105-114230912) | |
| 700-861, gnl|tetNig1|chr14 (5516292-5516466) | |
| 700-861, gnl|xenTro1|scaffold_1053 (289993-289808) | |
| 863-1391, gnl|bosTau2|chr22 (39434731-39434206) | |
| 863-1391, gnl|Hg17|chr3 (48311298-48310489) | |
| 863-1391, gnl|Mm7|chr9 (109539080-109539592) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 187-456, gnl|bosTau2|chr22 (39440932-39440649) | |
| 187-456, gnl|Hg17|chr3 (48317966-48317700) | |
| 187-456, gnl|Mm7|chr9 (109529324-109529583) | |
| 558-663, gnl|bosTau2|chr22 (39436871-39436766) | |
| 558-663, gnl|canFam2|chr20 (43772897-43772768) | |
| 558-663, gnl|echTel1|scaffold_155799 (3591-3719) | |
| 558-663, gnl|fr1|chrUn (63012717-63012603) | |
| 558-663, gnl|galGal2|chrUn (6062605-6062495) | |
| 558-663, gnl|hg17|chr3 (48313216-48313344) | |
| 558-663, gnl|Hg17|chr3 (48313325-48313220) | |
| 558-663, gnl|loxAfr1|scaffold_49350 (14168-14040) | |
| 558-663, gnl|mm7|chr9 (109536346-109536217) | |
| 558-663, gnl|Mm7|chr9 (109536235-109536340) | |
| 558-663, gnl|monDom2|scaffold_253 (256960-256832) | |
| 558-663, gnl|oryCun1|scaffold_93144 (157-29) | |
| 558-663, gnl|panTro1|chr2 (49792280-49792408) | |
| 558-663, gnl|rn3|chr8 (114229244-114229115) | |
| 558-663, gnl|tetNig1|chr14 (5516655-5516774) | |
| 558-663, gnl|xenTro1|scaffold_1053 (288221-288093) | |
| 700-861, gnl|bosTau2|chr22 (39435158-39434997) | |
| 700-861, gnl|canFam2|chr20 (43774881-43774684) | |
| 700-861, gnl|danRer3|chr20 (19888847-19888667) | |
| 700-861, gnl|echTel1|scaffold_155799 (2426-2618) | |
| 700-861, gnl|fr1|chrUn (63013125-63012932) | |
| 700-861, gnl|galGal2|chrUn (6064002-6063816) | |
| 700-861, gnl|hg17|chr3 (48311557-48311748) | |
| 700-861, gnl|Hg17|chr3 (48311732-48311571) | |
| 700-861, gnl|mm7|chr9 (109538736-109538543) | |
| 700-861, gnl|Mm7|chr9 (109538553-109538714) | |
| 700-861, gnl|monDom2|scaffold_253 (257509-257322) | |
| 700-861, gnl|oryCun1|scaffold_93144 (1524-1327) | |
| 700-861, gnl|panTro1|chr2 (49790622-49790813) | |
| 700-861, gnl|rheMac2|chr2 (88202726-88202535) | |
| 700-861, gnl|rn3|chr8 (114231105-114230912) | |
| 700-861, gnl|tetNig1|chr14 (5516292-5516466) | |
| 700-861, gnl|xenTro1|scaffold_1053 (289993-289808) | |
| 863-1391, gnl|bosTau2|chr22 (39434731-39434206) | |
| 863-1391, gnl|Hg17|chr3 (48311298-48310489) | |
| 863-1391, gnl|Mm7|chr9 (109539080-109539592) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| eje (0.395335) | |
| duo (0.345602) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ctl (0.153069) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| cly (0.120642) | |
| cty (0.10408) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.395335) | |
| duo (0.345602) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| ctl (0.153069) | |
| cst (0.140036) | |
| nca (0.136874) | |
| che (0.136314) | |
| cly (0.120642) | |
| cty (0.10408) |