Non-Coding RNA Search

Ss1.1-Lng1-LNG010099F05.5

Sequence:


               
               GAAGCGGGGCGGAACTTTGTTGTGGCGGTGAGGAACAGGAAGCCCTGAAGGGTCAGAAGA
AATATAAAAGCAGAGGCTGTTTTCTTTCGGTTTTTTTCTTTTTCTTTCTCGTAAAGAGCG
AGCGGCCTTTGTGGTGGCGGTTTGGGGTGGGCGCCGCCGAGGTGAGGGGGTCTCGCCTCC
CGCACGCTGGTAGACTTCTTGTTCCATTATGGATGGAGGGGATGATGGTAACCTTGTTAT
CAAAAAGAGGTTTGTATCTGAGGCAGAACTAGATGAACGGCGCAAAAGGAGGCAAGAAGA
ATGGGAGAAAGTTCGAAAACCTGAAGATCCAGAAGAATGCCCAGAGGAGGTTTATGACCC
TCGCTCTCTATATGAAAGGCTACAGGAACAGAAGGACAGGAAGCAGCAGGAGTATGAGGA
ACAGTTCAAATTCAAAAACATGGTAAGAGGCTTAGATGAAGATGAGACCAACTTCCTTGA
TGAGGTTTCTCGGCAGCAGGAACTAATAGAAAAGCAGCGAAGAGAAGAAGAGCTGAAAGA
ACTGAAGGAATACAGAAGTAATCTCAACAAGGTTGGAATTTCTCCAGAAAACAAGAAAGA
AGTGGAGAAGAAAGTAGCTGTGAAACCCATAGAAACCAAGAACAAGTTCTCCCAGGCGAA
ACTGTTGGCAGGAGCTGTGAAACATAAGAGTTCAGAGAGTGGCAACAGTGTGAAAAGACT
GAAATCGGACCCTGACCCAGATGACAAGAATCAAGAAGCCTCGTCGTGCGTGTCTCTTGG
AAGCACATCGCTGAGCGGTCCCTCCATCCACTGCCCCTCCGCCGCCGTCTGTATTGGCAT
CCTCCCAGGCTTGGGCGCCTACTCCGGGAGCAGCGACTCTGAGTCCAGCTCAGACAGCGA
GGGCACCATCAACGCCACCGGCAAGATCGTCTCCTCCATCTTCCGAACCAATACCTTCCT
CGAGGCCCCCTAGGTCCTCTGTCTTTACCACAGGGAGCTCCTCCCCGCAAGTAGACCGGA
CAGTTTATTCTGCCTGCAGGCATTAGTGGCCTCAGAAAACTCCTTTGCCTGCTCCCTGTT
GACACCATGATGTTTTTAACCTCATCTAAACATGTGCCAGAATCTACTTGTGGCGCAACT
TGTGTTTGGTTTCTTTCTACTCTAGTACAGATGCCCAAACCTGTCTTGTGGCCTCTGCCC
TCACTGATGTTGTAAGGCAGAGGTCACTACCCAGCAGAAACTCCACTAAAAATGCCCTGG
GAAGATAAGCACCAGTTGGCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCGGGGCGGAACTTTGTTGTGGCGGTGAGGAACAGGAAGCCCTGAAGGGTCAGAAGA
AATATAAAAGCAGAGGCTGTTTTCTTTCGGTTTTTTTCTTTTTCTTTCTCGTAAAGAGCG
AGCGGCCTTTGTGGTGGCGGTTTGGGGTGGGCGCCGCCGAGGTGAGGGGGTCTCGCCTCC
CGCACGCTGGTAGACTTCTTGTTCCATTATGGATGGAGGGGATGATGGTAACCTTGTTAT
CAAAAAGAGGTTTGTATCTGAGGCAGAACTAGATGAACGGCGCAAAAGGAGGCAAGAAGA
ATGGGAGAAAGTTCGAAAACCTGAAGATCCAGAAGAATGCCCAGAGGAGGTTTATGACCC
TCGCTCTCTATATGAAAGGCTACAGGAACAGAAGGACAGGAAGCAGCAGGAGTATGAGGA
ACAGTTCAAATTCAAAAACATGGTAAGAGGCTTAGATGAAGATGAGACCAACTTCCTTGA
TGAGGTTTCTCGGCAGCAGGAACTAATAGAAAAGCAGCGAAGAGAAGAAGAGCTGAAAGA
ACTGAAGGAATACAGAAGTAATCTCAACAAGGTTGGAATTTCTCCAGAAAACAAGAAAGA
AGTGGAGAAGAAAGTAGCTGTGAAACCCATAGAAACCAAGAACAAGTTCTCCCAGGCGAA
ACTGTTGGCAGGAGCTGTGAAACATAAGAGTTCAGAGAGTGGCAACAGTGTGAAAAGACT
GAAATCGGACCCTGACCCAGATGACAAGAATCAAGAAGCCTCGTCGTGCGTGTCTCTTGG
AAGCACATCGCTGAGCGGTCCCTCCATCCACTGCCCCTCCGCCGCCGTCTGTATTGGCAT
CCTCCCAGGCTTGGGCGCCTACTCCGGGAGCAGCGACTCTGAGTCCAGCTCAGACAGCGA
GGGCACCATCAACGCCACCGGCAAGATCGTCTCCTCCATCTTCCGAACCAATACCTTCCT
CGAGGCCCCCTAGGTCCTCTGTCTTTACCACAGGGAGCTCCTCCCCGCAAGTAGACCGGA
CAGTTTATTCTGCCTGCAGGCATTAGTGGCCTCAGAAAACTCCTTTGCCTGCTCCCTGTT
GACACCATGATGTTTTTAACCTCATCTAAACATGTGCCAGAATCTACTTGTGGCGCAACT
TGTGTTTGGTTTCTTTCTACTCTAGTACAGATGCCCAAACCTGTCTTGTGGCCTCTGCCC
TCACTGATGTTGTAAGGCAGAGGTCACTACCCAGCAGAAACTCCACTAAAAATGCCCTGG
GAAGATAAGCACCAGTTGGCTTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5E9Q0_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E9Q0_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               478-597, - strand, RNAz p=0.534646

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-597, - strand, RNAz p=0.534646

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               200-1284, gnl|bosTau2|chr27 (20105159-20104087)
               

               
               200-1284, gnl|Hg17|chr4 (154206194-154207284)
               

               
               200-1284, gnl|Mm7|chr1 (33328393-33327348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-1284, gnl|bosTau2|chr27 (20105159-20104087)
               

               
               200-1284, gnl|Hg17|chr4 (154206194-154207284)
               

               
               200-1284, gnl|Mm7|chr1 (33328393-33327348)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               col (0.390016)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.390016)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	200-1284, gnl\|bosTau2\|chr27 (20105159-20104087)
	200-1284, gnl\|Hg17\|chr4 (154206194-154207284)
	200-1284, gnl\|Mm7\|chr1 (33328393-33327348)

	col (0.390016)
	hyp (0.285673)
	cga (0.279096)
	ece (0.229305)
	mas (0.210305)
	tes (0.207814)
	fli (0.202881)
	fbs (0.175346)
	eye (0.170503)
	fat (0.147427)
	cov (0.132153)
	jej (0.0989218)