Non-Coding RNA Search

Ss1.1-Lng1-LNG010101A08.5

Sequence:


               
               GGATAGAACAGTATACTTTCATCTATATTGACAAACAGCCTGAGGAGGCTTTGTCCCAAG
CAAAAAAGAATGTTGCCTCCAAAGCTGACGTTAAAAAAATCCGAAGACCAAGATCCGTGC
TGAATACTCAGCCAGAACAGACCAATGCAGGGGAGGTGGCCTCCTCACTATCAAGTACTG
AAATTCGGAGACAAAGCCAGAGGCGGCACACGAGCGTGGAAGAGGAGGAACCACCTCCTG
TTAAAATAGCCTGGAAGACGGCAGCAGCAAGGAAGTCCTTACCAGCTTCCATTACGATGC
ACAAAGGGAGCCTGGATTTGCAGAAGTGTAACATGTCACCAGTTGTGAAAATTGAACAAG
TGTTTGCTCTTCAGAATGCTACCGGAGATGGGAAATTTATTGATCAATTTGTTTATTCAA
CGAAGGGAATTGGTAACAAAACGGAGATAAGTGTCAGGGGACAAGACAGACTTATAATTT
CTACACCAAACCAGAGAAATGAAAAGGCAACTCAGAATATGTCATCTCCTGAAGCAACAT
CTGGTCCTACAGGCTCAGTAGAAAAGAAGCAACAGAGAAGATCAATTAGAACTCGTTCTG
AATCAGAGAAATCCACTGAGGTTGTGCCAAAGAAGAAGATCAAAAAGGAGCAGGTTGGCT
TCCTACATGTAGAGAGTTAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATAGAACAGTATACTTTCATCTATATTGACAAACAGCCTGAGGAGGCTTTGTCCCAAG
CAAAAAAGAATGTTGCCTCCAAAGCTGACGTTAAAAAAATCCGAAGACCAAGATCCGTGC
TGAATACTCAGCCAGAACAGACCAATGCAGGGGAGGTGGCCTCCTCACTATCAAGTACTG
AAATTCGGAGACAAAGCCAGAGGCGGCACACGAGCGTGGAAGAGGAGGAACCACCTCCTG
TTAAAATAGCCTGGAAGACGGCAGCAGCAAGGAAGTCCTTACCAGCTTCCATTACGATGC
ACAAAGGGAGCCTGGATTTGCAGAAGTGTAACATGTCACCAGTTGTGAAAATTGAACAAG
TGTTTGCTCTTCAGAATGCTACCGGAGATGGGAAATTTATTGATCAATTTGTTTATTCAA
CGAAGGGAATTGGTAACAAAACGGAGATAAGTGTCAGGGGACAAGACAGACTTATAATTT
CTACACCAAACCAGAGAAATGAAAAGGCAACTCAGAATATGTCATCTCCTGAAGCAACAT
CTGGTCCTACAGGCTCAGTAGAAAAGAAGCAACAGAGAAGATCAATTAGAACTCGTTCTG
AATCAGAGAAATCCACTGAGGTTGTGCCAAAGAAGAAGATCAAAAAGGAGCAGGTTGGCT
TCCTACATGTAGAGAGTTAAAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820877|ref|XP_590676.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820877|ref|XP_590676.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, - strand, RNAz p=0.70778

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.70778

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-426, gnl|bosTau2|chr27 (21700089-21699664)
               

               
               1-426, gnl|Hg17|chr8 (38306477-38306052)
               

               
               1-426, gnl|Mm7|chr8 (24419308-24419733)
               


               
               551-681, gnl|bosTau2|chr27 (21693115-21692985)
               

               
               551-681, gnl|Hg17|chr8 (38297849-38297719)
               

               
               551-681, gnl|Mm7|chr8 (24429808-24429938)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-426, gnl|bosTau2|chr27 (21700089-21699664)
               

               
               1-426, gnl|Hg17|chr8 (38306477-38306052)
               

               
               1-426, gnl|Mm7|chr8 (24419308-24419733)
               


               
               551-681, gnl|bosTau2|chr27 (21693115-21692985)
               

               
               551-681, gnl|Hg17|chr8 (38297849-38297719)
               

               
               551-681, gnl|Mm7|chr8 (24429808-24429938)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               cbl (0.114797)

	1-426, gnl\|bosTau2\|chr27 (21700089-21699664)
	1-426, gnl\|Hg17\|chr8 (38306477-38306052)
	1-426, gnl\|Mm7\|chr8 (24419308-24419733)

	551-681, gnl\|bosTau2\|chr27 (21693115-21692985)
	551-681, gnl\|Hg17\|chr8 (38297849-38297719)
	551-681, gnl\|Mm7\|chr8 (24429808-24429938)